BAC Information

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BAC

Clone NameB6Ng01-323J04
Chromosome6 (Build37)
Map Location 20,021,501 - 20,022,644
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC626180, Eif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323J04.bB6Ng01-323J04.g
ACCGA112115GA112116
length1,1321,184
definitionB6Ng01-323J04.b B6Ng01-323J04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagacatatgagattaatctttactctttggaccaaggaaataa
aaatgatagtttttgttgtaatttctacgtgattttagagttaagcaata
catttattaaatacttagaatatttctttgcacattataaacataataaa
agctgattttcaatctgtaggatgacattactttcctacagatttattac
tgtcaaacacagggagctagatgagaaagggagaaagttcaaactcataa
aacatgaaggttaggaatgtatggcttaaattaaagaaaccaggaacaca
gatgttccaagggtgaattataattagcagctggcatttgtacagagtat
tgacatagatttatttgaacatgtcatgtgtaaaatcttgatgcttataa
agtttaaagtactgtaagtgaatattgaaatatttctacacacatatata
gactctgaaacatattagaaacaggaaagaatatgaatatttgtacataa
taatattcaaggagaactctgaaaattatttttaaaagaaccaaattagg
atagctgtactcataacatatgttataaataatatgaatatatatatata
cccaatccataaatatctgtattaaaataaatattttactcagtaatttc
tctcataagccactgaactaattttatactcttgattaaattgctttctg
catataatatttaagttgagtagcttcagttaattaataactctaatgga
atgagttcttaaattgacatacatatacatattaattttatatgctatgt
gaatcaatcatatataatatgatctaaaagtgtatgatagcatttgaaga
agaaagttcattacaatttcaaaatattcatatgaagcattgagcaaacc
tgttactatggtgttgcattgtttatttcaactttctattagggactgtt
cctttctttaatttgatagaacatcacaccataaaatcctctctccatgt
ttattatttgtatatacatacacacattagtgcattatcaagttcccaat
tctgaacatcattaattcccaaaaaatagtactaagactaaaaaataatt
agaataaacctataaaaagattttaatctttt

gaattcacccaagaggagtagatggcaggaaataatcaaactcagggctg
aaatcaaccatgtggaaacaaaaagaactattcaaagaatcaaacaaacc
aggagctggttctttgagaaaatcaacaagatagataaaatattagccag
actatctagagggcacagtgacaatatcctaattaacaaaatcagaaatg
aaaaaggagacataacaacacaacctgaggaaatccaaaacatcatcaga
tccttctacaaaaggatgtactcaacaaaattggaaaacatggatgaaat
ggacaaatttctagaaagataccaggtaataaagttaaatcaggatcaga
ataatgaccaaagagtcccatagcccctaaagcaatagaagcagtcattg
tgcagagttctatcagaccttcattgaagacctaattccaacactcttca
aactattccacaaaatagaaagagaaagtactctacccaattcattctat
gaagccacacttactctgacacctaaaccacacaaagatccaacaaagaa
agaggatttcagaccaatttcccttatgaatatcgatacaaatatactca
ataaaatcctctctaactgaaaccaagaatacatcaaaatgatcatccat
catgagcaagtaggattcatcccagggatgcaggtatggtttaatatttg
gaaatccatcaatgtaatataatatataaacaaactcaaagacaaaaacc
acatcatcatctcgttagacactgagaaagcatttgacaaaatccaacac
ccacacctggtaaaatcttagaaagatcaggaattcaaggcacataccta
aatataataaaagcaatctacagcacaccagtagccaacatcaaactaaa
tgcagagactactccaagcaatctcactaaatcagggactagacaggctg
tccactctctccctatctctcaataatagtacttgatgtcctaaccagag
aaattcgacacaaggagatcagggggatacaatggagatcagggatacaa
ttggaaggacaagtcaaatatcactttttgcagatgattgatagtatata
taaggtggccttaaaggttcacagagaactctattctgattaacaggctc
actggcgattagctgtgcatttaaaaattaacgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_20021501_20022644
seq2: B6Ng01-323J04.b_49_1180

seq1  GAATTCCAGACATATGAGATTAATCTTTACTCTTTGGACCAAGGAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACATATGAGATTAATCTTTACTCTTTGGACCAAGGAAATAA  50

seq1  AAATGATAGTTTTTGTTGTAATTTCTACGTGATTTTAGAGTTAAGCAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATAGTTTTTGTTGTAATTTCTACGTGATTTTAGAGTTAAGCAATA  100

seq1  CATTTATTAAATACTTAGAATATTTCTTTGCACATTATAAACATAATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTAAATACTTAGAATATTTCTTTGCACATTATAAACATAATAAA  150

seq1  AGCTGATTTTCAATCTGTAGGATGACATTACTTTCCTACAGATTTATTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATTTTCAATCTGTAGGATGACATTACTTTCCTACAGATTTATTAC  200

seq1  TGTCAAACACAGGGAGCTAGATGAGAAAGGGAGAAAGTTCAAACTCATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAACACAGGGAGCTAGATGAGAAAGGGAGAAAGTTCAAACTCATAA  250

seq1  AACATGAAGGTTAGGAATGTATGGCTTAAATTAAAGAAACCAGGAACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAAGGTTAGGAATGTATGGCTTAAATTAAAGAAACCAGGAACACA  300

seq1  GATGTTCCAAGGGTGAATTATAATTAGCAGCTGGCATTTGTACAGAGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCCAAGGGTGAATTATAATTAGCAGCTGGCATTTGTACAGAGTAT  350

seq1  TGACATAGATTTATTTGAACATGTCATGTGTAAAATCTTGATGCTTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAGATTTATTTGAACATGTCATGTGTAAAATCTTGATGCTTATAA  400

seq1  AGTTTAAAGTACTGTAAGTGAATATTGAAATATTTCTACACACATATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAAGTACTGTAAGTGAATATTGAAATATTTCTACACACATATATA  450

seq1  GACTCTGAAACATATTAGAAACAGGAAAGAATATGAATATTTGTACATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGAAACATATTAGAAACAGGAAAGAATATGAATATTTGTACATAA  500

seq1  TAATATTCAAGGAGAACTCTGAAAATTATTTTTAAAAGAACCAAATTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTCAAGGAGAACTCTGAAAATTATTTTTAAAAGAACCAAATTAGG  550

seq1  ATAGCTGTACTCATAACATATGTTATAAATAATATGAATATATATATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGTACTCATAACATATGTTATAAATAATATGAATATATATATATA  600

seq1  CCCAATCCATAAATATCTGTATTAAAATAAATATTTTACTCAGTAATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATCCATAAATATCTGTATTAAAATAAATATTTTACTCAGTAATTTC  650

seq1  TCTCATAAGCCACTGAACTAATTTTATACTCTTGATTAAATTGCTTTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATAAGCCACTGAACTAATTTTATACTCTTGATTAAATTGCTTTCTG  700

seq1  CATATAATATTTAAGTTGAGTAGCTTCAGTTAATTAATAACTCTAATGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAATATTTAAGTTGAGTAGCTTCAGTTAATTAATAACTCTAATGGA  750

seq1  ATGAGTTCTTAAATTGACATACATATACATATTAATTTTATATGCTATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTCTTAAATTGACATACATATACATATTAATTTTATATGCTATGT  800

seq1  GAATCAATCATATATAATATGATCTAAAAGTGTATGATAGCATTTGAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAATCATATATAATATGATCTAAAAGTGTATGATAGCATTTGAAGA  850

seq1  AGAAAGTTCATTACAATTTCAAAATATTCATATGAAGCATTGAGCAAACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTCATTACAATTTCAAAATATTCATATGAAGCATTGAGCAAACC  900

seq1  TGTTACTATGGTGTTGCATTGTTTATTTCAACTTTCTATTAGGGACTGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTATGGTGTTGCATTGTTTATTTCAACTTTCTATTAGGGACTGTT  950

seq1  CCTTTCTTTAATTTGATAGAACATCACACCATAAAATCCTCTCTCCATGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTTAATTTGATAGAACATCACACCATAAAATCCTCTCTCCATGT  1000

seq1  TTATTATTTGTATATAGAAATACAACACAATTTAGTGCATTATCAAAGTT  1050
      |||||||||||||||  | |||| |||||  ||||||||||||| |||||
seq2  TTATTATTTGTATAT--ACATAC-ACACA--TTAGTGCATTATC-AAGTT  1044

seq1  CCCAATTCTG-ACATCATTAATTTCCAAAAAATAGTAACTAAGACTAAAA  1099
      |||||||||| |||||||||||| |||||||||||| |||||||||  ||
seq2  CCCAATTCTGAACATCATTAATTCCCAAAAAATAGT-ACTAAGACT--AA  1091

seq1  AAAATAATTAAGAATAAACCTTATAAAAGATTTTTAAAATCTTTT  1144
      ||||||||| |||||||||||   ||||||||||   ||||||||
seq2  AAAATAATT-AGAATAAACCTATAAAAAGATTTT---AATCTTTT  1132


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