BAC Information

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BAC

Clone NameB6Ng01-324C19
Chromosome6 (Build37)
Map Location 120,035,896 - 120,157,424
singlet/doubletdoublet
Overlap geneNinj2, B4galnt3
Upstream geneCacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14, Erc1, LOC666887, Rad52, Wnk1, EG406236
Downstream geneCcdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps, Pex26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324C19.bB6Ng01-324C19.g
ACCGA112558GA112559
length599861
definitionB6Ng01-324C19.b B6Ng01-324C19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,035,896 - 120,036,495)(120,156,577 - 120,157,424)
sequence
gaattcactatgtaggtcaggctggccttgaactcacagatattggcctg
cctctgcctcccgagtgtaaatgctggtactaaaggcgggagccacttct
taactctgtcacagaggtgaaaggtgagaagtattccacatcagtctcag
gaaggctctgtcactaaccttcaactctagagtgagtcacagctaaaatc
ccctgctctgaatttgaaagaagggaaattttgtagcaatgaagaacgtc
ccagggtctcatggggcactccagagagctgtgggcctgagttgctatta
atgtcaaatcagactttagacagaagaacttcactggccattatattagc
tactagctatttaaatgtaactatttaaaccagacccggtgggtcacact
gtaatcccaacacctggaaagctgagacaggaggatcattttgtgctcaa
gaccagcctctaggccatataacaagacgttgtcttaaaacacacacaca
agccgagtggtagtggcagacacctttaatcccagcacttgggaggcaga
ggcaagcggatttctgaattcaaggccagcctggctctaaagtgagttc
gaattcactaagtcctgctacaagagattgtagaaatttgccctgtgttt
ggctttgtgtgagctgtcagtcgctccagtctcccagctctggtccaagg
gtctgctaactttgccttctctatccccaggatccacacagcatcatctt
cctctgtgacctgcacatccactttccagcaggaatcattgataccatcc
ggaagcactgtgtggagggcaagatggcctttgcccccatggtgatgcgg
ctgcactgtggggccaccccacagtggcctgagggtaagccttgccctgg
atagggaggaggtgatagttgaccttggcgtccaacacgaaggctggaaa
agttcacatctaagcatcagcgtctttcccatcctgccatcctgtcttgt
ctgagctttggacagacctcaggctctactgacaaccacagtagcaggca
gagcggtggcactgtcctcccccagcatgcagtcatctgacattcataca
gtatctgctgcgtgctggatgctgtgcgcaggaagacaggaaggtggaga
gacaaagtagatgagaagggctgctggggtcacatcctaattgccagcct
acagtcgggttgtgacatcagccatggtcacagctatgtttgatcttaag
tcttcctggggggtggggaggggcttcccccagacaggttagggacttcc
cctagctctcagctctctgcctctgtcactccagttctctactcatcaga
gcctgtggggatcccagtgttccaactcatcttcatcggtgtctttgtct
tgctccacaggctactgggaagtaaatgggatttgggactgcttcggatt
ctacaagtctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_120035896_120036495
seq2: B6Ng01-324C19.b_50_648

seq1  GAATTCACTATGTAGGTCAGGCTGGCCTTGAACTCACAGATATTGGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGGTCAGGCTGGCCTTGAACTCACAGATATTGGCCTG  50

seq1  CCTCTGCCTCCCGAGTGTAAATGCTGGTACTAAAGGCGGGAGCCACTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCCCGAGTGTAAATGCTGGTACTAAAGGCGGGAGCCACTTCT  100

seq1  TAACTCTGTCACAGAGGTGAAAGGTGAGAAGTATTCCACATCAGTCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTGTCACAGAGGTGAAAGGTGAGAAGTATTCCACATCAGTCTCAG  150

seq1  GAAGGCTCTGTCACTAACCTTCAACTCTAGAGTGAGTCACAGCTAAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTCTGTCACTAACCTTCAACTCTAGAGTGAGTCACAGCTAAAATC  200

seq1  CCCTGCTCTGAATTTGAAAGAAGGGAAATTTTGTAGCAATGAAGAACGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTCTGAATTTGAAAGAAGGGAAATTTTGTAGCAATGAAGAACGTC  250

seq1  CCAGGGTCTCATGGGGCACTCCAGAGAGCTGTGGGCCTGAGTTGCTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTCTCATGGGGCACTCCAGAGAGCTGTGGGCCTGAGTTGCTATTA  300

seq1  ATGTCAAATCAGACTTTAGACAGAAGAACTTCACTGGCCATTATATTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAAATCAGACTTTAGACAGAAGAACTTCACTGGCCATTATATTAGC  350

seq1  TACTAGCTATTTAAATGTAACTATTTAAACCAGACCCGGTGGGTCACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGCTATTTAAATGTAACTATTTAAACCAGACCCGGTGGGTCACACT  400

seq1  GTAATCCCAACACCTGGAAAGCTGAGACAGGAGGATCATTTTGTGCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCCCAACACCTGGAAAGCTGAGACAGGAGGATCATTTTGTGCTCAA  450

seq1  GACCAGCCTCTAGGCCATATAACAAGACGTTGTCTTAAAACACACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCCTCTAGGCCATATAACAAGACGTTGTCTTAAAACACACACACA  500

seq1  AGCCGAGTGGTAGTGGCAGACACCTTTAATCCCAGCACTTGGGAGGCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGAGTGGTAGTGGCAGACACCTTTAATCCCAGCACTTGGGAGGCAGA  550

seq1  GGCAAGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTC  600
      ||||||||||||||||| |||||||||||||||| ||  | |||||||||
seq2  GGCAAGCGGATTTCTGAATTCAAGGCCAGCCTGG-CTCTAAAGTGAGTTC  599

seq1: chr6_120156577_120157424
seq2: B6Ng01-324C19.g_67_926 (reverse)

seq1  AGACTTGTAG-ATCCCGAGCAGT-CCAAAT-CCATTTACTTCCCAGTAGC  47
      |||||||||| ||||  |||||| |||||| |||||||||||||||||||
seq2  AGACTTGTAGAATCCGAAGCAGTCCCAAATCCCATTTACTTCCCAGTAGC  50

seq1  CTGTGG-GC-AGAC-AAGACACCGATG-AGATGAGTTGG-ACACTGGGAT  92
      |||||| || |||| |||||||||||| ||||||||||| ||||||||||
seq2  CTGTGGAGCAAGACAAAGACACCGATGAAGATGAGTTGGAACACTGGGAT  100

seq1  -CCCACAGGCTCTGATG-GTAGAG-ACTGGGGTGACAGAGGCAGAGAGCT  139
       |||||||||||||||| |||||| ||||| |||||||||||||||||||
seq2  CCCCACAGGCTCTGATGAGTAGAGAACTGGAGTGACAGAGGCAGAGAGCT  150

seq1  GAGAGCTA-GGGAAGTCCCTGACCTGTCTGGGGGAAGCCCCTCCCCACCC  188
      |||||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  GAGAGCTAGGGGAAGTCCCTAACCTGTCTGGGGGAAGCCCCTCCCCACCC  200

seq1  CCCAGGAAGACTTAAGATCAAACATAGCTGTGACCATGGCTGATGTCACA  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAAGACTTAAGATCAAACATAGCTGTGACCATGGCTGATGTCACA  250

seq1  ACCCGACTGTAGGCTGGCAATTAGGATGTGACCCCAGCAGCCCTTCTCAT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGACTGTAGGCTGGCAATTAGGATGTGACCCCAGCAGCCCTTCTCAT  300

seq1  CTACTTTGTCTCTCCACCTTCCTGTCTTCCTGCGCACAGCATCCAGCACG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTGTCTCTCCACCTTCCTGTCTTCCTGCGCACAGCATCCAGCACG  350

seq1  CAGCAGATACTGTATGAATGTCAGATGACTGCATGCTGGGGGAGGACAGT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGATACTGTATGAATGTCAGATGACTGCATGCTGGGGGAGGACAGT  400

seq1  GCCACCGCTCTGCCTGCTACTGTGGTTGTCAGTAGAGCCTGAGGTCTGTC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCGCTCTGCCTGCTACTGTGGTTGTCAGTAGAGCCTGAGGTCTGTC  450

seq1  CAAAGCTCAGACAAGACAGGATGGCAGGATGGGAAAGACGCTGATGCTTA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTCAGACAAGACAGGATGGCAGGATGGGAAAGACGCTGATGCTTA  500

seq1  GATGTGAACTTTTCCAGCCTTCGTGTTGGACGCCAAGGTCAACTATCACC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGAACTTTTCCAGCCTTCGTGTTGGACGCCAAGGTCAACTATCACC  550

seq1  TCCTCCCTATCCAGGGCAAGGCTTACCCTCAGGCCACTGTGGGGTGGCCC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTATCCAGGGCAAGGCTTACCCTCAGGCCACTGTGGGGTGGCCC  600

seq1  CACAGTGCAGCCGCATCACCATGGGGGCAAAGGCCATCTTGCCCTCCACA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGCAGCCGCATCACCATGGGGGCAAAGGCCATCTTGCCCTCCACA  650

seq1  CAGTGCTTCCGGATGGTATCAATGATTCCTGCTGGAAAGTGGATGTGCAG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTTCCGGATGGTATCAATGATTCCTGCTGGAAAGTGGATGTGCAG  700

seq1  GTCACAGAGGAAGATGATGCTGTGTGGATCCTGGGGATAGAGAAGGCAAA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGAGGAAGATGATGCTGTGTGGATCCTGGGGATAGAGAAGGCAAA  750

seq1  GTTAGCAGACCCTTGGACCAGAGCTGGGAGACTGGAGCGACTGACAGCTC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCAGACCCTTGGACCAGAGCTGGGAGACTGGAGCGACTGACAGCTC  800

seq1  ACACAAAGCCAAACACAGGGCAAATTTCTACAATCTCTTGTAGCAGGACT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGCCAAACACAGGGCAAATTTCTACAATCTCTTGTAGCAGGACT  850

seq1  TAGTGAATTC  848
      ||||||||||
seq2  TAGTGAATTC  860