BAC Information

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BAC

Clone NameB6Ng01-324G20
Chromosome6 (Build37)
Map Location 14,171,490 - 14,335,793
singlet/doubletdoublet
Overlap geneLOC100040513
Upstream geneGm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik, LOC100041043
Downstream geneLOC667797, Ppp1r3a, Foxp2, LOC100040568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324G20.bB6Ng01-324G20.g
ACCGA112745GA112746
length1,1291,194
definitionB6Ng01-324G20.b B6Ng01-324G20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,171,490 - 14,172,622)(14,334,594 - 14,335,793)
sequence
gaattcttcctttcctgtttgtatctccttgatgtccttcagtgacttgt
tctagctaagacttcttgtactatttgaatatgtatgaagagagtgccat
agctccaggctgagaaacagcttaatgagtggtagtcatagagaagggaa
ggcccagctttgaaatttcatgtttaagcttagctttagtgttgttagtt
accaagagcttcacatattatcctgaagcctgaagtcagcagatttgaca
gtcctctatctgactcaaggtttgcttctgtagataatgataactctaag
gttccatctggattactgaacttttagtgcttcatttaacaattagggta
tttaatgcatttacatgccccattgctgttatacttgtgacatatccata
actagaacataacaatcccagggtatatagattaggaagtctcagaaaca
taagataacatggcagagccatatactacaaagctccatgcagcccacag
agcctcctggtatgttaaggtgagaagcttctaaaagaaaggcagctatg
atggacatcttatagcttaatggttggagttctacaacagcctgtttctt
aggatttctattgctataataaaagacaatgaccacgaaaaccttgagct
gaaataatttattttctcaactagtctgtcatcctgggaaatctgggcag
gaattcaaaactgaaagcttggaggcaggacctgatccttgtggctttgc
tcaacttgctttttgggagtcacaccaccatctcagaggtagtaccatcc
gctcacagtgatctggattcttccaaatcaatcatcaatcaagaaaggct
tgccacagaccaatctggtctaggcattttctcaaacgaagattccaact
ttcagaactgctcaatgtatcaaatttatataaagctaggcagtccagct
tgttaggaaagacagactttattttcaatttaacttttttcttctcctgg
cattccagttttagaaagctctgaaagaggcacttgatacttgaaggcct
tcatatgactgaaaacagacaaagattattcttgagtcacagatgtattt
ctgttcagaagaggagtatggtgaggtct

cggaattcacacacacagagcaaggcatacacacacatacatgtgaatac
acacagagcaagacaaacaaaaatgcaaatagacacacacatacataaca
aatcacacagagagaaaacattcatgcataactatgtggggggggggcaa
gtctcattcatcttagagttctgggggttataacagtaattttggttgtc
tttatgggtcccccctttagcttgaactattgattctagaaaaaaaggat
gcagagcctataactttaggtaaacaagtataggcctgaccatgaacatt
tctgacaagactgggccaattagctaaggagcgctgctggtgggagacta
agcttgcttggcctttgtctcaggtcagacaggtatggaagagccaaaag
tttgccatcatcattatttatctgtgctcgtttccccatctgtctgtctg
taagggttatgtctatctcgaagtgcctcactagcacagctaacataaag
aataacccttctgctttagatgaaaaaaaaaaagtaattcagttgtaagt
tgatgttatctccttaaaatgaccaagacatattttacctgtttggtttt
agtctagaagtgtattcacagggttcattccagagacagcctaataagcc
agggattcagctgaaacccagtgcatccttcagtcctcctgctgtctgtg
acattccacatcacccctaaatgaataaaaggaaaaataaattgccactt
ctaatattatgcccagttcccatgccaaataattatgaacacactggata
ctttgatagaatggaatgagtagcaaaatctatgtttaattacaaaccga
aattcttacatgggaatcatttgacagtcttagctcttacgtggttggga
aatacaaaagacatctggcattcaacaagaatattagcctcatctcactt
ctcccaggtataaatagtggtacaaatgtgtgtatacttacactggaaaa
aaatactcataacactttaatttcttgagaaagttatgaagaaatctaga
tactaggattattcgagaagattgtagacaagagactatattagtcattt
ccaaagaaagacaggacaataggattgacatttgtattgaacttttccat
gccaatccttttttcaccacaccctcatgttctagacatccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_14171490_14172622
seq2: B6Ng01-324G20.b_44_1172

seq1  GAATTCTTCCTTTCCTGTTTGTATCTCCTTGATGTCCTTCAGTGACTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTTTCCTGTTTGTATCTCCTTGATGTCCTTCAGTGACTTGT  50

seq1  TCTAGCTAAGACTTCTTGTACTATTTGAATATGTATGAAGAGAGTGCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTAAGACTTCTTGTACTATTTGAATATGTATGAAGAGAGTGCCAT  100

seq1  AGCTCCAGGCTGAGAAACAGCTTAATGAGTGGTAGTCATAGAGAAGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGGCTGAGAAACAGCTTAATGAGTGGTAGTCATAGAGAAGGGAA  150

seq1  GGCCCAGCTTTGAAATTTCATGTTTAAGCTTAGCTTTAGTGTTGTTAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGCTTTGAAATTTCATGTTTAAGCTTAGCTTTAGTGTTGTTAGTT  200

seq1  ACCAAGAGCTTCACATATTATCCTGAAGCCTGAAGTCAGCAGATTTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAGCTTCACATATTATCCTGAAGCCTGAAGTCAGCAGATTTGACA  250

seq1  GTCCTCTATCTGACTCAAGGTTTGCTTCTGTAGATAATGATAACTCTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTATCTGACTCAAGGTTTGCTTCTGTAGATAATGATAACTCTAAG  300

seq1  GTTCCATCTGGATTACTGAACTTTTAGTGCTTCATTTAACAATTAGGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATCTGGATTACTGAACTTTTAGTGCTTCATTTAACAATTAGGGTA  350

seq1  TTTAATGCATTTACATGCCCCATTGCTGTTATACTTGTGACATATCCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGCATTTACATGCCCCATTGCTGTTATACTTGTGACATATCCATA  400

seq1  ACTAGAACATAACAATCCCAGGGTATATAGATTAGGAAGTCTCAGAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAACATAACAATCCCAGGGTATATAGATTAGGAAGTCTCAGAAACA  450

seq1  TAAGATAACATGGCAGAGCCATATACTACAAAGCTCCATGCAGCCCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAACATGGCAGAGCCATATACTACAAAGCTCCATGCAGCCCACAG  500

seq1  AGCCTCCTGGTATGTTAAGGTGAGAAGCTTCTAAAAGAAAGGCAGCTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCTGGTATGTTAAGGTGAGAAGCTTCTAAAAGAAAGGCAGCTATG  550

seq1  ATGGACATCTTATAGCTTAATGGTTGGAGTTCTACAACAGCCTGTTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACATCTTATAGCTTAATGGTTGGAGTTCTACAACAGCCTGTTTCTT  600

seq1  AGGATTTCTATTGCTATAATAAAAGACAATGACCACGAAAACCTTGAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTCTATTGCTATAATAAAAGACAATGACCACGAAAACCTTGAGCT  650

seq1  GAAATAATTTATTTTCTCAACTAGTCTGTCATCCTGGGAAATCTGGGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAATTTATTTTCTCAACTAGTCTGTCATCCTGGGAAATCTGGGCAG  700

seq1  GAATTCAAAACTGAAAGCTTGGAGGCAGGACCTGATCCTTGTGGCTTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACTGAAAGCTTGGAGGCAGGACCTGATCCTTGTGGCTTTGC  750

seq1  TCAACTTGCTTTTTGGGAGTCACACCACCATCTCAGAGGTAGTACCATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTGCTTTTTGGGAGTCACACCACCATCTCAGAGGTAGTACCATCC  800

seq1  GCTCACAGTGATCTGGATTCTTCCAAATCAATCATCAATCAAGAAAGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAGTGATCTGGATTCTTCCAAATCAATCATCAATCAAGAAAGGCT  850

seq1  TGCCACAGACCAATCTGGTCTAGGCATTTTCTCAAACGAAGATTCCAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAGACCAATCTGGTCTAGGCATTTTCTCAAACGAAGATTCCAACT  900

seq1  TTCAGAACTGCTCAATGTATCAAATTTATATAAAGCTAGGCAGTCCAGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAACTGCTCAATGTATCAAATTTATATAAAGCTAGGCAGTCCAGCT  950

seq1  TGTTAGGAAAGACAGACTTTATTTTCAA-TTAAC-TTTTTCTTCTCCTGG  998
      |||||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  TGTTAGGAAAGACAGACTTTATTTTCAATTTAACTTTTTTCTTCTCCTGG  1000

seq1  CAATTCCAGTTTTAGAAAGCTCTGAAAGAAGGCACTTTGATACTTGAAAG  1048
      | |||||||||||||||||||||||||| |||||| |||||||||| |||
seq2  C-ATTCCAGTTTTAGAAAGCTCTGAAAG-AGGCAC-TTGATACTTG-AAG  1046

seq1  GCCTTCAATATGACTGAAAACAGACAAAGATTATTCTTTGAGGCCACAAG  1098
      |||||| ||||||||||||||||||||||||||||| |||| | ||| ||
seq2  GCCTTC-ATATGACTGAAAACAGACAAAGATTATTC-TTGA-GTCAC-AG  1092

seq1  ATGTATTTAATGTCAG-AGA-GAGTATGGTGAAGTCT  1133
      ||||||||    |||| ||| ||||||||||| ||||
seq2  ATGTATTTCTGTTCAGAAGAGGAGTATGGTGAGGTCT  1129


seq1: chr6_14334594_14335793
seq2: B6Ng01-324G20.g_66_1257 (reverse)

seq1  AAAGGA--TTTTGAACATGAGGTTGT--TGAAAAAAAGATTGACATTGGA  46
      ||||||  | | |||||||||| |||  |||||||| ||||| || ||||
seq2  AAAGGATGTCTAGAACATGAGGGTGTGGTGAAAAAAGGATTGGCA-TGGA  49

seq1  AAAAATCATATAACAAATGTCAAATCTTTATTTGTTCCTTGTTCCTTTCC  96
      |||  ||| || |||||||||||  ||    ||||  | |||  ||||| 
seq2  AAAGTTCA-AT-ACAAATGTCAATCCT---ATTGT--CCTGT--CTTTCT  90

seq1  TTTGAAATG-CTAATTATAGTCTCTTTGTCTAC-ATCTCTTCGAATTATT  144
      || |||||| |||| ||||||||| |||||||| ||||  |||||| || 
seq2  TTGGAAATGACTAA-TATAGTCTC-TTGTCTACAATCTTCTCGAATAATC  138

seq1  CTAAGTATCTAGATTTCTTCAT-ACTTTCTCAAGAAATTAAAGTGTTATG  193
      || ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CT-AGTATCTAGATTTCTTCATAACTTTCTCAAGAAATTAAAGTGTTATG  187

seq1  GTTATTTTTTTCCAGTGTAAGTATACACACATTTGTACCACTATTTATAC  243
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTTTTCCAGTGTAAGTATACACACATTTGTACCACTATTTATAC  237

seq1  CTGGGAGAAGTGAGATGAGGCTAAATATTCTTGTTTGAATGCCAGATGTC  293
      |||||||||||||||||||||| |||||||||| ||||||||||||||||
seq2  CTGGGAGAAGTGAGATGAGGCT-AATATTCTTG-TTGAATGCCAGATGTC  285

seq1  TTTTGTATTTCCCAACCACGTAAGAGCTAAGACTGTCAAATGATTCCCAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATTTCCCAACCACGTAAGAGCTAAGACTGTCAAATGATTCCCAT  335

seq1  GTAAGAATTTCGGTTTGTAATTAAACATAGATTTTGCTACTCATTCCATT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAATTTCGGTTTGTAATTAAACATAGATTTTGCTACTCATTCCATT  385

seq1  CTATCAAAGTATCCAGTGTGTTCATAATTATTTGGCATGGGAACTGGGCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAAAGTATCCAGTGTGTTCATAATTATTTGGCATGGGAACTGGGCA  435

seq1  TAATATTAGAAGTGGCAATTTATTTTTCCTTTTATTCATTTAGGGGTGAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTAGAAGTGGCAATTTATTTTTCCTTTTATTCATTTAGGGGTGAT  485

seq1  GTGGAATGTCACAGACAGCAGGAGGACTGAAGGATGCACTGGGTTTCAGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATGTCACAGACAGCAGGAGGACTGAAGGATGCACTGGGTTTCAGC  535

seq1  TGAATCCCTGGCTTATTAGGCTGTCTCTGGAATGAACCCTGTGAATACAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCCTGGCTTATTAGGCTGTCTCTGGAATGAACCCTGTGAATACAC  585

seq1  TTCTAGACTAAAACCAAACAGGTAAAATATGTCTTGGTCATTTTAAGGAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGACTAAAACCAAACAGGTAAAATATGTCTTGGTCATTTTAAGGAG  635

seq1  ATAACATCAACTTACAACTGAATTACTTTTTTTTTTTCATCTAAAGCAGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATCAACTTACAACTGAATTACTTTTTTTTTTTCATCTAAAGCAGA  685

seq1  AGGGTTATTCTTTATGTTAGCTGTGCTAGTGAGGCACTTCGAGATAGACA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTATTCTTTATGTTAGCTGTGCTAGTGAGGCACTTCGAGATAGACA  735

seq1  TAACCCTTACAGACAGACAGATGGGGAAACGAGCACAGATAAATAATGAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTTACAGACAGACAGATGGGGAAACGAGCACAGATAAATAATGAT  785

seq1  GATGGCAAACTTTTGGCTCTTCCATACCTGTCTGACCTGAGACAAAGGCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCAAACTTTTGGCTCTTCCATACCTGTCTGACCTGAGACAAAGGCC  835

seq1  AAGCAAGCTTAGTCTCCCACCAGCAGCGCTCCTTAGCTAATTGGCCCAGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGCTTAGTCTCCCACCAGCAGCGCTCCTTAGCTAATTGGCCCAGT  885

seq1  CTTGTCAGAAATGTTCATGGTCAGGCCTATACTTGTTTACCTAAAGTTAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCAGAAATGTTCATGGTCAGGCCTATACTTGTTTACCTAAAGTTAT  935

seq1  AGGCTCTGCATCCTTTTTTTCTAGAATCAATAGTTCAAGCTAAAGGGGGG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTGCATCCTTTTTTTCTAGAATCAATAGTTCAAGCTAAAGGGGGG  985

seq1  ACCCATAAAGACAACCAAAATTACTGTTATAACCCCCAGAACTCTAAGAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATAAAGACAACCAAAATTACTGTTATAACCCCCAGAACTCTAAGAT  1035

seq1  GAATGAGACTTGCCCCCCCCCCACATAGTTATGCATGAATGTTTTCTCTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGACTTGCCCCCCCCCCACATAGTTATGCATGAATGTTTTCTCTC  1085

seq1  TGTGTGATTTGTTATGTATGTGTGTGTCTATTTGCATTTTTGTTTGTCTT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGATTTGTTATGTATGTGTGTGTCTATTTGCATTTTTGTTTGTCTT  1135

seq1  GCTCTGTGTGTATTCACATGTATGTGTGTGTATGCCTTGCTCTGTGTGTG  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTGTGTATTCACATGTATGTGTGTGTATGCCTTGCTCTGTGTGTG  1185

seq1  TGAATTC  1200
      |||||||
seq2  TGAATTC  1192


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