BAC Information

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BAC

Clone NameB6Ng01-324J08
Chromosome6 (Build37)
Map Location 133,244,178 - 133,245,339
singlet/doubletsinglet
Overlap gene5530400C23Rik
Upstream geneLOC631126, Prpmp5, EG667929, EG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618
Downstream geneEG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324J08.bB6Ng01-324J08.g
ACCGA112859GA112860
length1,1831,155
definitionB6Ng01-324J08.b B6Ng01-324J08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagtaatatgtttaatgcccatttgagcacaaaactgtttaaag
ctggcactaacatatcccgggccactgtctgtcttgaggatcataggctg
tggaacagccaccaagcagaagagaacatgtctgataactatgtttggtg
tcctctcccgtttgtaaagatgcacagataaaatcactaaaggtatcaac
agagacatgaatatattttagctttccaaagggggtgtagtgggtgacat
ccatttgccacagttcacctaggaccagtccacgaggattaacccctagg
tgtggctcaggcagaagagtcagacagccttggcattgtcgaacaatctg
ttgagcctgttgacgggtgatggaaaatttaagcctcagggtatgggcat
taagatgatgtaaatcatgggtctgttgagcagcagcaagaggggtaata
gtcaaggcagaagctattacctgggtggcctgatcaactatatagttgcc
ttcagacaaagatccaggcaggccagaatgagcacaaatatggccaataa
aaaagggaaaattacggacaagaattaggttctggagtttagcaaacatt
ggagatgcattgggagaagggtggatatatggaacagtttctaaaagggg
gacagaggcagccacataggtgtcgtctgtatacaaattaaaagaagttt
caggcaatagctcaaataccttaacaatagctgccagctcaacaagctgc
accaaggagaagtctgttataaaatgtgagacctccccaccaatattaaa
agcagccatatctgaggagtacccatcagtaaaaactaacatagtcccag
gaatcgggtttgactttgttctcttagggaaaactacaggtgtcctatgt
agaaactgaatcagtttatcagcagggtaatgattgtcaatcacaccttg
aaaggagatacaattaactgcccaatcatcattatatttgattaccactg
aacctggagtatcataggaggacatacatctggatctctgccaaaagcta
tgcactctctgccagccaaggaacattagcatcaactgagatatgtgcac
cctctgagaagcctgcagtgactaagaaagcttaagttgcccatgcgaac
ttgtgtgtaaataaggagttaggaaagacacag
gaattctgagtacacaaacagcaaaatatatccaagaaaatcatgcagcg
gggagatccacagacattatgaagcatttaattttctaagaaaggtgtct
ttggaaatgaataaactaacgttctaaatagaaaataattcatgtaagcc
tcaattttatacaatatttacataatatgcgtactaacttttctaaggaa
ttgccaatggattaaaattattggctttcaaggacaaaaatgagaacttt
ctataatatataactatgatattctgccatgtatattcctagaaatgtag
attctgatgaatttgggcatacacaaatttagaaaaacatattaacaacc
tgaacaatatatcacgtagagacaatggatcaaaacatccctgtgtgtgg
ggggcagatcgtccatgcttaagttgagaggtcagtggaggtgaattcag
aggacataagaccaaagaaagatgaattctgtagttctataaatgaagtc
aactcaaagggtaatcattgttatcaaataaattaatgaaatacataaaa
ttaaaagagcaatggagcataaaggagctgtggagctatgttactcaggg
gcacaagtacattgtagatattgtgcaatattcgcttagaccatcaaaga
tgtatgactttgtactgtctgaatgctaagatttgaaatgaggccgaggc
agatgccatgcacatattttgccagttagcatatttttaaactatgatgt
gacaaatactgaagcaaggtctttctatttattaaatttgactcagtcat
cttacctaatttctccggggccctctccaaaaagatacatcatgattaac
tactcgtggtcggagcattttaagaggatgaggaggaggtactctctctt
gaccagatcctccctcaatcaaaggtttctgctttgactgtatttgttgg
gggtgaaccttgtgagtttcagaagatgaagaaagatttttaaccctcca
ctacatttctttttctagttgaatttttcctcttgttttccagtgagtca
caatgctctgactcctctgctgtgtgattcctccgtctacttgctgtcat
tccagagtgaacgaaagaatccactttactaatgtgatgattcctggata
ttccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_133244178_133245339
seq2: B6Ng01-324J08.g_66_1220 (reverse)

seq1  GGGAATATCCAAGAATCATCACCATTAGTAAAAGTGGA-TCCTTCGTCCA  49
      ||||||||||| ||||||||| ||||||| |||||||| || ||||| | 
seq2  GGGAATATCCAGGAATCATCA-CATTAGT-AAAGTGGATTCTTTCGTTC-  47

seq1  ACTCTGGGAATGAACAGCAAGTAGAACCGGAGGAATCACAACAGGCAGA-  98
      ||||| |||||| ||||||||||||  |||||||||||| ||| ||||| 
seq2  ACTCT-GGAATG-ACAGCAAGTAGA--CGGAGGAATCAC-ACA-GCAGAG  91

seq1  GAGTCAAGAGCATTGTGACTCCACTGGAAAACAAGA-GAAAAATCAACCT  147
      ||||| |||||||||||||| ||||||||||||||| |||||||  | ||
seq2  GAGTC-AGAGCATTGTGACT-CACTGGAAAACAAGAGGAAAAATTCAACT  139

seq1  AGAAAAAGAAATGTAGTGGA-GGTTAAAAATCTTTCTTCATCTCCTGAAA  196
      |||||||||||||||||||| |||||||||||||||||||||| ||| ||
seq2  AGAAAAAGAAATGTAGTGGAGGGTTAAAAATCTTTCTTCATCTTCTG-AA  188

seq1  ACTCACAAGGTTCA-CCCCAACAAATACAGTCAAAGCAGAAACCTTTGAT  245
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACTCACAAGGTTCACCCCCAACAAATACAGTCAAAGCAGAAACCTTTGAT  238

seq1  TGAGGGAGGATCTGGTCAAGAGAGAGTACCTCCTCCTCATCCTCTTAAAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGAGGGAGGATCTGGTCAAGAGAGAGTACCTCCTCCTCATCCTCTTAAAA  288

seq1  TGCTCCGACCACGAGTAGTTAATCATGATGTATCTTTTTGGAGAGGGCCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCGACCACGAGTAGTTAATCATGATGTATCTTTTTGGAGAGGGCCC  338

seq1  CGGAGAAATTAGGTAAGATGACTGAGTCAAATTTAATAAATAGAAAGACC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGAAATTAGGTAAGATGACTGAGTCAAATTTAATAAATAGAAAGACC  388

seq1  TTGCTTCAGTATTTGTCACATCATAGTTTAAAAATATGCTAACTGGCAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCAGTATTTGTCACATCATAGTTTAAAAATATGCTAACTGGCAAA  438

seq1  ATATGTGCATGGCATCTGCCTCGGCCTCATTTCAAATCTTAGCATTCAGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGCATGGCATCTGCCTCGGCCTCATTTCAAATCTTAGCATTCAGA  488

seq1  CAGTACAAAGTCATACATCTTTGATGGTCTAAGCGAATATTGCACAATAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAAAGTCATACATCTTTGATGGTCTAAGCGAATATTGCACAATAT  538

seq1  CTACAATGTACTTGTGCCCCTGAGTAACATAGCTCCACAGCTCCTTTATG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAATGTACTTGTGCCCCTGAGTAACATAGCTCCACAGCTCCTTTATG  588

seq1  CTCCATTGCTCTTTTAATTTTATGTATTTCATTAATTTATTTGATAACAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTGCTCTTTTAATTTTATGTATTTCATTAATTTATTTGATAACAA  638

seq1  TGATTACCCTTTGAGTTGACTTCATTTATAGAACTACAGAATTCATCTTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACCCTTTGAGTTGACTTCATTTATAGAACTACAGAATTCATCTTT  688

seq1  CTTTGGTCTTATGTCCTCTGAATTCACCTCCACTGACCTCTCAACTTAAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTCTTATGTCCTCTGAATTCACCTCCACTGACCTCTCAACTTAAG  738

seq1  CATGGACGATCTGCCCCCCACACACAGGGATGTTTTGATCCATTGTCTCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACGATCTGCCCCCCACACACAGGGATGTTTTGATCCATTGTCTCT  788

seq1  ACGTGATATATTGTTCAGGTTGTTAATATGTTTTTCTAAATTTGTGTATG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGATATATTGTTCAGGTTGTTAATATGTTTTTCTAAATTTGTGTATG  838

seq1  CCCAAATTCATCAGAATCTACATTTCTAGGAATATACATGGCAGAATATC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATTCATCAGAATCTACATTTCTAGGAATATACATGGCAGAATATC  888

seq1  ATAGTTATATATTATAGAAAGTTCTCATTTTTGTCCTTGAAAGCCAATAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTATATATTATAGAAAGTTCTCATTTTTGTCCTTGAAAGCCAATAA  938

seq1  TTTTAATCCATTGGCAATTCCTTAGAAAAGTTAGTACGCATATTATGTAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCCATTGGCAATTCCTTAGAAAAGTTAGTACGCATATTATGTAA  988

seq1  ATATTGTATAAAATTGAGGCTTACATGAATTATTTTCTATTTAGAACGTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTATAAAATTGAGGCTTACATGAATTATTTTCTATTTAGAACGTT  1038

seq1  AGTTTATTCATTTCCAAAGACACCTTTCTTAGAAAATTAAATGCTTCATA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTCATTTCCAAAGACACCTTTCTTAGAAAATTAAATGCTTCATA  1088

seq1  ATGTCTGTGGATCTCCCCGCTGCATGATTTTCTTGGATATATTTTGCTGT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTGGATCTCCCCGCTGCATGATTTTCTTGGATATATTTTGCTGT  1138

seq1  TTGTGTACTCAGAATTC  1162
      |||||||||||||||||
seq2  TTGTGTACTCAGAATTC  1155