BAC Information

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BAC

Clone NameB6Ng01-324J10
Chromosome6 (Build37)
Map Location 67,884,029 - 68,068,979
singlet/doubletdoublet
Overlap geneIgk, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118
Upstream geneGng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218
Downstream geneIgkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324J10.bB6Ng01-324J10.g
ACCGA112863GA112864
length1,132998
definitionB6Ng01-324J10.b B6Ng01-324J10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,884,029 - 67,885,153)(68,068,411 - 68,068,979)
sequence
gaattcattcaattccattccacagtctccctatgctgctcattctgctt
tattttgctttcttttcattcataatattcattagaaattaaaaatataa
gtcatctattctcctcttccctttaactctgaaacacttattctcaccaa
tttcatttcaactacaatttttagttgactcagtgattgaattttctttc
cttgcatgggtatgaattggggctaatttactagaacataacagtttttc
aatggctacaccactgaggaaaatgtcacagcctttcctagcagctatta
actgctaataggctgttactaaagagtaggaactcattagaccattcttt
ttcatgataaaataatgttgtatctaattttgagaaggtaagcatagtat
cgtgcttatgagtacagggactgtcttagtcagggtttctattcctgcac
aaacatcatgaccaagaagcaagttggggaggaaagggtttatttggctt
acacttccatactgctgttcatcaccaaaggaagttaggactggaactca
agcaggtcagaaagcaggagctgatgcagaggccatggagggatgttcct
tactggcttgcttcccctggcttgctcagcctgctcttttatagaaccca
agtgtaccagcccagagatggtcccacccacaaggggcctttcccccttg
atcactaattgaggaaatgccttacagttggatctcatggaggcatttcc
tcaactgaagctcctttctctgtgataactccagctgtgtcgagttgaca
caaaactagccagtacagggaccatgtctagaatcccctttttcccaggt
tttcttgttattctttggttctacatttccactacatgctattttgagat
gttctttagcctgaaaaaatgatgttcattttttttctgttgaggattaa
gtgtgaccactctagttattctaagcaaatagagcttttttattaggaca
atttaagaccactgttacatcagtttatataaaatgacataagcataacc
ctatgataccacaggaaagtaaatactcagtgttactagaataaatttat
ttattttatctggtaatgggtatttcaacatg
gaattcagtgttacagaaaccccaaaataaaggttacagcaatcacagtc
actacagagccttagtcccatgtgatatatcacctgtcattagtggtgag
tgatgagccaccactacatcacttgctcaacaatccagtgtgactcacag
gctaagtaaatgaacaattgacatacttacctttagctttttcaactcaa
aaattggaattacacaacagcctttttattccagtattttgtgactgatc
atgtcataaaattttgacaaaagtaatttgcttttgagaaaataggtaag
ttttggaaatattcaatatttataaaatattatttaagatcagactatag
gcaaacctgtaggatattttcattcttagtggttaatgctgaagtgctta
gtccattatttctgccatttctgggttggtggtccagggttctataagaa
gcagtctgtctcctaattcaaaaacaggagccaccagcttctgtccattg
gttgggtgttatggtaaacccccttccaaatatgtcctgacaatgaaaac
acaacacagttattattattacatgctgtgagcctagattgggcagatct
attgctactctaccatctcaacagcttatgagactccttagaacttgcag
tttctccaggccttgtgcttctgctctgcttttcttcttcctcctcctct
gcatcctctccctcttccattttctctttctttttctctctcaccttctg
tcccaccttcccctttatctgcccaatcatcagctctcctctattttaaa
aattaagatgggaagcaggttttaaaggaaatcacctgattttctgactc
atttccttgtttctcaaccactcacaggagaatggaattaacattcaaat
ataatttatctccagggctatccacaacagttgggatgtaaacgtttgca
tctgacttcttttcagctgcttgttgggcctttcatagggcagtcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_67884029_67885153
seq2: B6Ng01-324J10.b_46_1177

seq1  GAATTCATTCAATTCCATTCCACAGTCTCCCTATGCTGCTCATTCTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCAATTCCATTCCACAGTCTCCCTATGCTGCTCATTCTGCTT  50

seq1  TATTTTGCTTTCTTTTCATTCATAATATTCATTAGAAATTAAAAATATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGCTTTCTTTTCATTCATAATATTCATTAGAAATTAAAAATATAA  100

seq1  GTCATCTATTCTCCTCTTCCCTTTAACTCTGAAACACTTATTCTCACCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTATTCTCCTCTTCCCTTTAACTCTGAAACACTTATTCTCACCAA  150

seq1  TTTCATTTCAACTACAATTTTTAGTTGACTCAGTGATTGAATTTTCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTCAACTACAATTTTTAGTTGACTCAGTGATTGAATTTTCTTTC  200

seq1  CTTGCATGGGTATGAATTGGGGCTAATTTACTAGAACATAACAGTTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATGGGTATGAATTGGGGCTAATTTACTAGAACATAACAGTTTTTC  250

seq1  AATGGCTACACCACTGAGGAAAATGTCACAGCCTTTCCTAGCAGCTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTACACCACTGAGGAAAATGTCACAGCCTTTCCTAGCAGCTATTA  300

seq1  ACTGCTAATAGGCTGTTACTAAAGAGTAGGAACTCATTAGACCATTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAATAGGCTGTTACTAAAGAGTAGGAACTCATTAGACCATTCTTT  350

seq1  TTCATGATAAAATAATGTTGTATCTAATTTTGAGAAGGTAAGCATAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGATAAAATAATGTTGTATCTAATTTTGAGAAGGTAAGCATAGTAT  400

seq1  CGTGCTTATGAGTACAGGGACTGTCTTAGTCAGGGTTTCTATTCCTGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTTATGAGTACAGGGACTGTCTTAGTCAGGGTTTCTATTCCTGCAC  450

seq1  AAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTTGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTTGGCTT  500

seq1  ACACTTCCATACTGCTGTTCATCACCAAAGGAAGTTAGGACTGGAACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCCATACTGCTGTTCATCACCAAAGGAAGTTAGGACTGGAACTCA  550

seq1  AGCAGGTCAGAAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTCAGAAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCCT  600

seq1  TACTGGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTCTTTTATAGAACCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTCTTTTATAGAACCCA  650

seq1  AGTGTACCAGCCCAGAGATGGTCCCACCCACAAGGGGCCTTTCCCCCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACCAGCCCAGAGATGGTCCCACCCACAAGGGGCCTTTCCCCCTTG  700

seq1  ATCACTAATTGAGGAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTAATTGAGGAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCC  750

seq1  TCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCTGTGTCGAGTTGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCTGTGTCGAGTTGACA  800

seq1  CAAAACTAGCCAGTACAGGGACCATGTCTAGAATCCCCTTTTTCCCAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTAGCCAGTACAGGGACCATGTCTAGAATCCCCTTTTTCCCAGGT  850

seq1  TTTCTTGTTATTCTTTGGTTCTTACATTTCCACTACATGCTA-TTTGAGA  899
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  TTTCTTGTTATTCTTTGGTTC-TACATTTCCACTACATGCTATTTTGAGA  899

seq1  TGTTCTTTAGCCTGAAAAAATGATGTTCATTTTTTTTCTGTTGAGGATTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTAGCCTGAAAAAATGATGTTCATTTTTTTTCTGTTGAGGATTA  949

seq1  AGTGTGACCACTCTAGTTATTCTAAGCAAATAGAGC-TTTTTATTAGGAC  998
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGTGTGACCACTCTAGTTATTCTAAGCAAATAGAGCTTTTTTATTAGGAC  999

seq1  AAATTAAGACCACTGTTACATCAG-TTATATAAAATGACATAAGCATAA-  1046
      || ||||||||||||||||||||| |||||||||||||||||||||||| 
seq2  AATTTAAGACCACTGTTACATCAGTTTATATAAAATGACATAAGCATAAC  1049

seq1  CCTATGATA-CACAGAAAGGTAAATACTAAGTGTAAATTAAGAATAAATT  1095
      ||||||||| ||||| || ||||||||| ||||| | |  ||||||||||
seq2  CCTATGATACCACAGGAAAGTAAATACTCAGTGTTACT--AGAATAAATT  1097

seq1  --ATTATTTTATCTG--TATGGGTA-TTCAACATG  1125
         ||||||||||||   ||||||| |||||||||
seq2  TATTTATTTTATCTGGTAATGGGTATTTCAACATG  1132

seq1: chr6_68068411_68068979
seq2: B6Ng01-324J10.g_68_636 (reverse)

seq1  ATAATAATAACTGTGTTGTGTTTTCATTGTCAGGACATATTTGGAAGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATAACTGTGTTGTGTTTTCATTGTCAGGACATATTTGGAAGGGG  50

seq1  GTTTACCATAACACCCAACCAATGGACAGAAGCTGGTGGCTCCTGTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCATAACACCCAACCAATGGACAGAAGCTGGTGGCTCCTGTTTTT  100

seq1  GAATTAGGAGACAGACTGCTTCTTATAGAACCCTGGACCACCAACCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGGAGACAGACTGCTTCTTATAGAACCCTGGACCACCAACCCAGA  150

seq1  AATGGCAGAAATAATGGACTAAGCACTTCAGCATTAACCACTAAGAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAGAAATAATGGACTAAGCACTTCAGCATTAACCACTAAGAATGA  200

seq1  AAATATCCTACAGGTTTGCCTATAGTCTGATCTTAAATAATATTTTATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCCTACAGGTTTGCCTATAGTCTGATCTTAAATAATATTTTATAA  250

seq1  ATATTGAATATTTCCAAAACTTACCTATTTTCTCAAAAGCAAATTACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAATATTTCCAAAACTTACCTATTTTCTCAAAAGCAAATTACTTT  300

seq1  TGTCAAAATTTTATGACATGATCAGTCACAAAATACTGGAATAAAAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAATTTTATGACATGATCAGTCACAAAATACTGGAATAAAAAGGC  350

seq1  TGTTGTGTAATTCCAATTTTTGAGTTGAAAAAGCTAAAGGTAAGTATGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTAATTCCAATTTTTGAGTTGAAAAAGCTAAAGGTAAGTATGTC  400

seq1  AATTGTTCATTTACTTAGCCTGTGAGTCACACTGGATTGTTGAGCAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTCATTTACTTAGCCTGTGAGTCACACTGGATTGTTGAGCAAGTG  450

seq1  ATGTAGTGGTGGCTCATCACTCACCACTAATGACAGGTGATATATCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTGGTGGCTCATCACTCACCACTAATGACAGGTGATATATCACAT  500

seq1  GGGACTAAGGCTCTGTAGTGACTGTGATTGCTGTAACCTTTATTTTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTAAGGCTCTGTAGTGACTGTGATTGCTGTAACCTTTATTTTGGGG  550

seq1  TTTCTGTAACACTGAATTC  569
      |||||||||||||||||||
seq2  TTTCTGTAACACTGAATTC  569