BAC Information

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BAC

Clone NameB6Ng01-324L19
Chromosome6 (Build37)
Map Location 36,392,785 - 36,516,444
singlet/doubletdoublet
Overlap geneChrm2
Upstream geneMtpn, LOC100039312, LOC100039327, 9330158H04Rik
Downstream geneEG620863, LOC100039370, Ptn, LOC100039514, Dgki, EG665024, Creb3l2, Akr1d1, LOC665046
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324L19.bB6Ng01-324L19.g
ACCGA112975GA112976
length1,1031,016
definitionB6Ng01-324L19.b B6Ng01-324L19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,392,785 - 36,393,883)(36,515,871 - 36,516,444)
sequence
gaattcttcagttgtgtaaagagggtttcatcgtgtcaaaatcatgacag
acgccacatgagaaggagaaattccccatacagctgtgactcagagtcgc
cacccctagagtacaggctcatgaaatgggccctgcagtcacaattacta
aagttaaaatgattccctgatattcaatggtgcttatgattcctgcaatt
cctgatcttctcaagtggaaatctgggtgtatatatgtatttgtatatta
cttttttgagacagggtttctctatctagtgccgtctgtcctggaactct
cttgtagaccaggctggccttgaactcattggaatccacctgcctctgcc
tgccaagtactggcattataggagcgtgccactatatccaactgatatat
cagatagttgggttaatctcaactcctagcagagaatcaaaattgatttt
tgcattttgacgttaagtataaagtattacttgaatctcatagatcaggg
atatgaacccataaacatgaggaaacaaacaagaaaaagaagcaaaggag
aatgcaggaaagaaattcaataatggttgaaccctgggtcaaatctcagc
tttctgcatgtatgaccttgctccaattatttatctcctgtgaatctcaa
ggttcccatgagcaggctaagataaacagcactgtgtttattagattgta
aagtgaatgaaatattgaaagtttctagtgaagagactggagagcagtgg
gtgttcagtaatttgtagtgactattttctgaatgttgagggggaaagtt
tgttcatcatatactatgttgatcctagatcatggtcatgtgctttgtaa
cttttcaaaaaggcagaggaaacaatgattttaatatctatccactttgc
ttgtattcattgtaaataatgggactgattttgtgagcaatgcagctagc
tattccagctgctatttttttttctaagtgagattatttagtaatattct
ttgggagaggatttcactcatgattttagcactgcttcttgctgctcttg
ccactcttggataggcgtataattgtttggaaagagtccatgatttgatc
aga

gaattctatagttctttgaaaagaaagactttggagtgaatacttagtaa
gcaggaaaatatactttcaaacattgaacagttacacttcagtaattata
agcacacctaatgtccagatcttgatttttatgtggtattttctaataaa
aggagccagggctccttgcataatggctggttctaaggctgcagtgctga
aaaggtaggtggtttctgtctaggactatgtgtgatgctggaaagtaaaa
gcttgataggataaaagcaaacacagggtagggaccaataaatcaacagt
agtaacccctaacatctaaagtgtttccaacagccaaagctagattgata
caaacaacaaaagggtaatgacaatattgagtttaaccacagaattaaac
atttctgagtgaatactgatacaactaatcagttgaacaaattaattgta
gaagaaatggcaaaacatccttaaagaagagttctaagcaatagttaact
tcctttccttttgttttagggaacatggcttagtgattcatactctgaag
aatacatctgaagaatatccaaagaatgaatatatatatatatatatata
tatacatatatatatatatatataatacatatacatacacacacacacac
acacacatatatataaagaatagagtatgaaacgtatagaacacagagtc
tgaagatatctgacagtagacaccaactcaagcaagtgttcaaggtcagt
accacagctagtcctgttgatatcttaaccctctgataaaatgaatcctt
acctttgaggttgtctttctcaaaacccataaatctggtttattatgata
aagttgttgatataccatccataattttttttgttcagattctaaatcgc
aagggtgatcatggttaaaagcacagtttttttttttcaataaataaagt
catgagggttgcttattttatgggacatcatttttccataataaaagggt
ggaggaaacttcgggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_36392785_36393883
seq2: B6Ng01-324L19.b_46_1148

seq1  GAATTCTTCAGTTGTGTAAAGAGGGTTTCATCGTGTCAAAATCATGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGTTGTGTAAAGAGGGTTTCATCGTGTCAAAATCATGACAG  50

seq1  ACGCCACATGAGAAGGAGAAATTCCCCATACAGCTGTGACTCAGAGTCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCACATGAGAAGGAGAAATTCCCCATACAGCTGTGACTCAGAGTCGC  100

seq1  CACCCCTAGAGTACAGGCTCATGAAATGGGCCCTGCAGTCACAATTACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTAGAGTACAGGCTCATGAAATGGGCCCTGCAGTCACAATTACTA  150

seq1  AAGTTAAAATGATTCCCTGATATTCAATGGTGCTTATGATTCCTGCAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAAATGATTCCCTGATATTCAATGGTGCTTATGATTCCTGCAATT  200

seq1  CCTGATCTTCTCAAGTGGAAATCTGGGTGTATATATGTATTTGTATATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATCTTCTCAAGTGGAAATCTGGGTGTATATATGTATTTGTATATTA  250

seq1  CTTTTTTGAGACAGGGTTTCTCTATCTAGTGCCGTCTGTCCTGGAACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTGAGACAGGGTTTCTCTATCTAGTGCCGTCTGTCCTGGAACTCT  300

seq1  CTTGTAGACCAGGCTGGCCTTGAACTCATTGGAATCCACCTGCCTCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGACCAGGCTGGCCTTGAACTCATTGGAATCCACCTGCCTCTGCC  350

seq1  TGCCAAGTACTGGCATTATAGGAGCGTGCCACTATATCCAACTGATATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGTACTGGCATTATAGGAGCGTGCCACTATATCCAACTGATATAT  400

seq1  CAGATAGTTGGGTTAATCTCAACTCCTAGCAGAGAATCAAAATTGATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGTTGGGTTAATCTCAACTCCTAGCAGAGAATCAAAATTGATTTT  450

seq1  TGCATTTTGACGTTAAGTATAAAGTATTACTTGAATCTCATAGATCAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTGACGTTAAGTATAAAGTATTACTTGAATCTCATAGATCAGGG  500

seq1  ATATGAACCCATAAACATGAGGAAACAAACAAGAAAAAGAAGCAAAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAACCCATAAACATGAGGAAACAAACAAGAAAAAGAAGCAAAGGAG  550

seq1  AATGCAGGAAAGAAATTCAATAATGGTTGAACCCTGGGTCAAATCTCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGGAAAGAAATTCAATAATGGTTGAACCCTGGGTCAAATCTCAGC  600

seq1  TTTCTGCATGTATGACCTTGCTCCAATTATTTATCTCCTGTGAATCTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCATGTATGACCTTGCTCCAATTATTTATCTCCTGTGAATCTCAA  650

seq1  GGTTCCCATGAGCAGGCTAAGATAAACAGCACTGTGTTTATTAGATTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCATGAGCAGGCTAAGATAAACAGCACTGTGTTTATTAGATTGTA  700

seq1  AAGTGAATGAAATATTGAAAGTTTCTAGTGAAGAGACTGGAGAGCAGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAATGAAATATTGAAAGTTTCTAGTGAAGAGACTGGAGAGCAGTGG  750

seq1  GTGTTCAGTAATTTGTAGTGACTATTTTCTGAATGTTGAGGGGGAAAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAGTAATTTGTAGTGACTATTTTCTGAATGTTGAGGGGGAAAGTT  800

seq1  TGTTCATCATATACTATGTTGATCCTAGATCATGGTCATGTGCTTTGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATCATATACTATGTTGATCCTAGATCATGGTCATGTGCTTTGTAA  850

seq1  CTTTTCAAAAAGGCAGAGGAAACAATGATTTTAATATCTATCCACTTTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAAAAAGGCAGAGGAAACAATGATTTTAATATCTATCCACTTTGC  900

seq1  TTGTATTCATTGTAAATAATGGGACTGATTTTGTGAGCAATGCAGCTAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTCATTGTAAATAATGGGACTGATTTTGTGAGCAATGCAGCTAGC  950

seq1  TATTCCAGCTGCTATTTTTTTTTCTAAGTGAGATTATTTAGTAAATATTC  1000
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TATTCCAGCTGCTATTTTTTTTTCTAAGTGAGATTATTTAGT-AATATTC  999

seq1  TTT-GGAGAAGAATTCACTCATGATTTTAGCACTGCTTC-TGCTGCTC-T  1047
      ||| ||||| || |||||||||||||||||||||||||| |||||||| |
seq2  TTTGGGAGAGGATTTCACTCATGATTTTAGCACTGCTTCTTGCTGCTCTT  1049

seq1  GCCACTCTT-GATAGCGTTATA--TG-TTGGAAAGAGTCCATGATTTTGA  1093
      ||||||||| |||||   ||||  || ||||||||||||||||||||   
seq2  GCCACTCTTGGATAGGCGTATAATTGTTTGGAAAGAGTCCATGATTT--G  1097

seq1  ATCAGA  1099
      ||||||
seq2  ATCAGA  1103


seq1: chr6_36515871_36516444
seq2: B6Ng01-324L19.g_68_641 (reverse)

seq1  CTTTGGATATTCTTCAGATGTATTCTTCAGAGTATGAATCACTAAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGATATTCTTCAGATGTATTCTTCAGAGTATGAATCACTAAGCCAT  50

seq1  GTTCCCTAAAACAAAAGGAAAGGAAGTTAACTATTGCTTAGAACTCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTAAAACAAAAGGAAAGGAAGTTAACTATTGCTTAGAACTCTTCT  100

seq1  TTAAGGATGTTTTGCCATTTCTTCTACAATTAATTTGTTCAACTGATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGATGTTTTGCCATTTCTTCTACAATTAATTTGTTCAACTGATTAG  150

seq1  TTGTATCAGTATTCACTCAGAAATGTTTAATTCTGTGGTTAAACTCAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCAGTATTCACTCAGAAATGTTTAATTCTGTGGTTAAACTCAATA  200

seq1  TTGTCATTACCCTTTTGTTGTTTGTATCAATCTAGCTTTGGCTGTTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTACCCTTTTGTTGTTTGTATCAATCTAGCTTTGGCTGTTGGAA  250

seq1  ACACTTTAGATGTTAGGGGTTACTACTGTTGATTTATTGGTCCCTACCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTAGATGTTAGGGGTTACTACTGTTGATTTATTGGTCCCTACCCT  300

seq1  GTGTTTGCTTTTATCCTATCAAGCTTTTACTTTCCAGCATCACACATAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGCTTTTATCCTATCAAGCTTTTACTTTCCAGCATCACACATAGT  350

seq1  CCTAGACAGAAACCACCTACCTTTTCAGCACTGCAGCCTTAGAACCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGACAGAAACCACCTACCTTTTCAGCACTGCAGCCTTAGAACCAGCC  400

seq1  ATTATGCAAGGAGCCCTGGCTCCTTTTATTAGAAAATACCACATAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCAAGGAGCCCTGGCTCCTTTTATTAGAAAATACCACATAAAAAT  450

seq1  CAAGATCTGGACATTAGGTGTGCTTATAATTACTGAAGTGTAACTGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCTGGACATTAGGTGTGCTTATAATTACTGAAGTGTAACTGTTCA  500

seq1  ATGTTTGAAAGTATATTTTCCTGCTTACTAAGTATTCACTCCAAAGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGAAAGTATATTTTCCTGCTTACTAAGTATTCACTCCAAAGTCTT  550

seq1  TCTTTTCAAAGAACTATAGAATTC  574
      ||||||||||||||||||||||||
seq2  TCTTTTCAAAGAACTATAGAATTC  574


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