BAC Information

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BAC

Clone NameB6Ng01-324N16
Chromosome6 (Build37)
Map Location 3,821,316 - 3,822,223
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039885, LOC100039896, LOC100040185, EG667335, Samd9l, AI987662, Ccdc132, Calcr, LOC100039942
Downstream geneTfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1, LOC667381, LOC100039965, Col1a2, Casd1, Sgce, Peg10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324N16.bB6Ng01-324N16.g
ACCGA113064GA113065
length1,187927
definitionB6Ng01-324N16.b B6Ng01-324N16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtacaccatattaaaatagggttatttggtt
ctctggagcctttggttcttgagttcttattatatattggatattatcct
ctatgagatgtaggattggtaaagatcttttcccaatctgttggttgcca
ttttgtcctattgaaagtgtcctttgccttacagaagctttacaatttta
tgaggtcccatttgtcaatttttgatcttagagcataagccattggtgtt
atgttcagaaaaatttcccctgtgcccatgtgctcaaggctcttccccac
tttcttttctactagtttcagtgtgtctggttttatgtggaggtccttga
tccacttggacttgagttttgtacaaggagataagaatggatccatttac
attcttctacatgctgactgccagttgaaccagcaccatttcttaaaaat
gctgtctttttttccactagatggttttagctcctttgtcaaagatcaag
tgaccataggtgtatgggttcatttctgggtcttcaattctattccattg
atctacctgcctatctctgtaccaataccatgcagtttttatcacaattg
ctctgcaattcagcttgaggtcaggaatggtgagtccctcagaagttctt
ttattgttgagaataatttttgctatcctggattttttgttattccagat
taatttgcaaattcctctttcttttcttttcaatgttttacagcctcaat
taagagtaacttccataaccagttcctctctactggagaaagggccaagc
ttcctcctttgagtctctaatgtccttcttaattctagccattcacttga
caacgtttgaagaagagacttcctctgtgtagccctggctgtcctggaac
tcactctgtagactaggctgggcctcgaactcagaaatttcacctgcctc
tgcctcccaagtgctgggattaaaggcgtgtgcccaccgtgcccagcttg
aatcttttgttaataacttcttatgtttggtaataacttatatagttcag
actttatataatatattcaaccttatactagttatacattctcccagtaa
gctaaggaacctatgcatcattcagtcagaattcaggttattctagcttc
atgggagatgaattatggatccagggagccgctttga
gaattcaaagcaatcgcttatttgaaaagctgtgttttgtgtcatgcttt
atttgaaaatagacttgtccaaatatgattgtaagcataacagctctggt
ttgaggaaatgtggttagaggaatttattgtttctcctaggctttaagta
acactgcaatgtaaaaagtatatgtatatgcagatctccataaaatattt
ccaattaattcatcaactattcttaaagttatgcctttgttttaaagaaa
gaatgtatttaaaaatctatcttttaggttctataagtacaatttaaaat
tattataataggagttataaacccaaagaataaaatgtttatcctcttga
tgctttagttttcatgatacaggaagtagacatgcaagtgcatgtatcct
tcatacagaaagtttctgtctcactaaagaaacatgaagaaaattcctct
caacatcctcaccagcatctgctgtcacctgaatttttgatcttagccat
tttgactggtatgaggtggaatttcagggttgttttgatttgcatttccc
tgatgactaaggatgctgaacatcttttcaggtgcttccctgccattcag
tattcctcaggtgagaattctttgtttagctctgagccccatttttcaat
ggggttatttgattttctggagtccaccttcttcgattctttatatatat
tggatattagttctcctatctgatttaggataggtaaagatcctttccca
atctgttggtggcctttttgtcttattgacagtgtcttttgtcttacaga
agctttgccattttatgaggtcccatttgtcaatttcttgatcttacagc
acaagccattgcttgttctattcaggaatttttttccccttgttgcctat
tatcttcgaggctttttccccaccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_3821316_3822223
seq2: B6Ng01-324N16.g_68_983

seq1  GAATTCAAAGCAATCGCTTATTTGAAAAGCTGTGTTTTGTGTCATGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCAATCGCTTATTTGAAAAGCTGTGTTTTGTGTCATGCTTT  50

seq1  ATTTGAAAATAGACTTGTCCAAATATGATTGTAAGCATAACAGCTCTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAAATAGACTTGTCCAAATATGATTGTAAGCATAACAGCTCTGGT  100

seq1  TTGAGGAAATGTGGTTAGAGGAATTTATTGTTTCTCCTAGGCTTTAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAAATGTGGTTAGAGGAATTTATTGTTTCTCCTAGGCTTTAAGTA  150

seq1  ACACTGCAATGTAAAAAGTATATGTATATGCAGATCTCCATAAAATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCAATGTAAAAAGTATATGTATATGCAGATCTCCATAAAATATTT  200

seq1  CCAATTAATTCATCAACTATTCTTAAAGTTATGCCTTTGTTTTAAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTAATTCATCAACTATTCTTAAAGTTATGCCTTTGTTTTAAAGAAA  250

seq1  GAATGTATTTAAAAATCTATCTTTTAGGTTCTATAAGTACAATTTAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTATTTAAAAATCTATCTTTTAGGTTCTATAAGTACAATTTAAAAT  300

seq1  TATTATAATAGGAGTTATAAACCCAAAGAATAAAATGTTTATCCTCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAATAGGAGTTATAAACCCAAAGAATAAAATGTTTATCCTCTTGA  350

seq1  TGCTTTAGTTTTCATGATACAGGAAGTAGACATGCAAGTGCATGTATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAGTTTTCATGATACAGGAAGTAGACATGCAAGTGCATGTATCCT  400

seq1  TCATACAGAAAGTTTCTGTCTCACTAAAGAAACATGAAGAAAATTCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACAGAAAGTTTCTGTCTCACTAAAGAAACATGAAGAAAATTCCTCT  450

seq1  CAACATCCTCACCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCCTCACCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCAT  500

seq1  TTTGACTGGTATGAGGTGGAATTTCAGGGTTGTTTTGATTTGCATTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTGGTATGAGGTGGAATTTCAGGGTTGTTTTGATTTGCATTTCCC  550

seq1  TGATGACTAAGGATGCTGAACATCTTTTCAGGTGCTTCCCTGCCATTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACTAAGGATGCTGAACATCTTTTCAGGTGCTTCCCTGCCATTCAG  600

seq1  TATTCCTCAGGTGAGAATTCTTTGTTTAGCTCTGAGCCCCATTTTTCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTCAGGTGAGAATTCTTTGTTTAGCTCTGAGCCCCATTTTTCAAT  650

seq1  GGGGTTATTTGATTTTCTGGAGTCCACCTTCTTCGATTCTTTATATATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTATTTGATTTTCTGGAGTCCACCTTCTTCGATTCTTTATATATAT  700

seq1  TGGATATTAG-TCTCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCA  749
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGGATATTAGTTCTCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCA  750

seq1  ATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTTGTCTTACAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTTGTCTTACAGA  800

seq1  AGCTTTGCAATTTTATGAGGTCCCATTTGTCAA-TTCTTGATCTTACAGC  848
      |||||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  AGCTTTGCCATTTTATGAGGTCCCATTTGTCAATTTCTTGATCTTACAGC  850

seq1  ACAAGCCATTGC-TGTTCTATTCAGGAA--TTTTTCCCCT--GTGCCCA-  892
      |||||||||||| |||||||||||||||  ||||||||||   |||| | 
seq2  ACAAGCCATTGCTTGTTCTATTCAGGAATTTTTTTCCCCTTGTTGCCTAT  900

seq1  TATCTTCGAGGCTTTT  908
      ||||||||||||||||
seq2  TATCTTCGAGGCTTTT  916