BAC Information

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BAC

Clone NameB6Ng01-325C09
Chromosome6 (Build37)
Map Location 107,422,903 - 107,424,164
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn4, Il5ra, Trnt1, Crbn, Ppia-ps6_1128.1
Downstream geneLrrn1, Setmar, Sumf1, LOC100043718, Itpr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325C09.bB6Ng01-325C09.g
ACCGA113282GA113283
length1,227987
definitionB6Ng01-325C09.b B6Ng01-325C09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaatatatgagcctaccattctcatcccaaaaggaccacagcat
tcaaagagattaacacagtgcctgacacacagcttcaaggcactaaatgc
ttttactatctttaaagtagtgatatatatcctttttggttttgcttcct
agaggaaacactatggtaggtagtggttttcatcagttagaaaggacata
tttttcttgacatgataaattgatgcttttattatattcttcaccaaaga
attgcatctttgaataaagtttacttttattttcatattgccacctattt
gcagtatgataaagtcactttgaatgaataccatattctcggcaagtaga
taaacattaaaggttaaacactggagcaattttaaaaagtttaagaacgg
cttctcttagattatccccaaattaaagcaataaaaaccctagcatggaa
tgttaacaattttcatcaaccatgctgatacagataaatatttataatac
tggaagatagcttcaaacactaataatatgactttcatattcaggtatac
gtggattttatccttatctttcccattcatagactctgaaaccacaagga
agttatctaatattttccagtctgttctcttatctgtaaagtgataagaa
acctcctttggagcttgcacatgcatgtgtgtgagtgttctctgcctcct
gactcactatgacctggatcacctctagactctgttaatgttgccctttg
ggagatacagtctgtcaaccttgagccaccagaactatgacataaaacaa
atagttctgtttacatagtaagtccatctttggtatttcattataataat
gcaaaagagaacagcgtaccactgaactgcattctttaaaaattgttaag
acagaaaaaatgtacattatgtgtatttttatatgatttaaagaataaat
ttaaaataatttcacatttgaaagcaatgtgaaacaccttgggccaagtc
cacaatacagacgctggcatgaagcagtcaccattaagacacattgcagg
atataaggcacattcatcaccccagatcttctcagttaattaacataggt
gattgattctgagattgtctaactataggcaaggaaaaacggagtattca
ttcattctcatcatcatttccccattcattctcattctatcctcatcgaa
actttctttgcagatgacttggcagtt

gaattccaaatattaaaccatccctgcatccctgagatgaagcctacttg
atcatgatgtttgatcgttttgatgtgttattggattcggtttgtgagga
ttttattggaaataagggaaatcagtctgaagttatcttattgtgtggtt
tagatatcagagtaattgtggcttcatagaatgaattaggtagagtacct
tctgcttctattttgtggaatagtttgaggagaactggaattagatcttc
tttgaaggtctgatagaactctgcaccaaacccatctggtcctgggcttt
tttgtttgagagattattaaggactgcttctatttctttagggtatatag
gactgtttagatcattaatctgatccttatttaacttttgtacctggtat
ctgtctaggaagttgtccatttcatccatgttttccagttttgtttgttt
gtttgtttgttttgttgagtataccattatgtagtaggatctgatgattt
ttttttttttggatttcctcagattctgttgctatatctcccttttcatt
tctgattttgttaattaggatactgtccctgtgtcctctagttagtatgg
ctgagggtttatctatcttgttgattttctcaaagaaccagcttctggtt
tggttcattctttgtatagttttttttgtttccacttgtttgatttgagc
cctgagttttgattatttcctgttgtctactcctcttgggtgaattttgc
ttccttttgttctagagcttttaggtacgctcttgctccagtttcttttt
tggaggcactcagagctatgagtttttcctcttaggcatgcttttcattg
tgttccttaagtttgggtatgttgtggctttcattttcattaaactctaa
aatgtctttatttcctttctttctcgaccaagctatcattgagtagagtg
gctgttcagctttcatgtgtatgtgggtttctattac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_107422903_107424164
seq2: B6Ng01-325C09.b_45_1271

seq1  GAATTCAAATATATGAGCCTACCATTCTCATCCCAAAAGGACCACAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATATATGAGCCTACCATTCTCATCCCAAAAGGACCACAGCAT  50

seq1  TCAAAGAGATTAACACAGTGCCTGACACACAGCTTCAAGGCACTAAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAGATTAACACAGTGCCTGACACACAGCTTCAAGGCACTAAATGC  100

seq1  TTTTACTATCTTTAAAGTAGTGATATATATCCTTTTTGGTTTTGCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTATCTTTAAAGTAGTGATATATATCCTTTTTGGTTTTGCTTCCT  150

seq1  AGAGGAAACACTATGGTAGGTAGTGGTTTTCATCAGTTAGAAAGGACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAACACTATGGTAGGTAGTGGTTTTCATCAGTTAGAAAGGACATA  200

seq1  TTTTTCTTGACATGATAAATTGATGCTTTTATTATATTCTTCACCAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTGACATGATAAATTGATGCTTTTATTATATTCTTCACCAAAGA  250

seq1  ATTGCATCTTTGAATAAAGTTTACTTTTATTTTCATATTGCCACCTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATCTTTGAATAAAGTTTACTTTTATTTTCATATTGCCACCTATTT  300

seq1  GCAGTATGATAAAGTCACTTTGAATGAATACCATATTCTCGGCAAGTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATGATAAAGTCACTTTGAATGAATACCATATTCTCGGCAAGTAGA  350

seq1  TAAACATTAAAGGTTAAACACTGGAGCAATTTTAAAAAGTTTAAGAACGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATTAAAGGTTAAACACTGGAGCAATTTTAAAAAGTTTAAGAACGG  400

seq1  CTTCTCTTAGATTATCCCCAAATTAAAGCAATAAAAACCCTAGCATGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTAGATTATCCCCAAATTAAAGCAATAAAAACCCTAGCATGGAA  450

seq1  TGTTAACAATTTTCATCAACCATGCTGATACAGATAAATATTTATAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACAATTTTCATCAACCATGCTGATACAGATAAATATTTATAATAC  500

seq1  TGGAAGATAGCTTCAAACACTAATAATATGACTTTCATATTCAGGTATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGATAGCTTCAAACACTAATAATATGACTTTCATATTCAGGTATAC  550

seq1  GTGGATTTTATCCTTATCTTTCCCATTCATAGACTCTGAAACCACAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTTTATCCTTATCTTTCCCATTCATAGACTCTGAAACCACAAGGA  600

seq1  AGTTATCTAATATTTTCCAGTCTGTTCTCTTATCTGTAAAGTGATAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCTAATATTTTCCAGTCTGTTCTCTTATCTGTAAAGTGATAAGAA  650

seq1  ACCTCCTTTGGAGCTTGCACATGCATGTGTGTGAGTGTTCTCTGCCTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTTTGGAGCTTGCACATGCATGTGTGTGAGTGTTCTCTGCCTCCT  700

seq1  GACTCACTATGACCTGGATCACCTCTAGACTCTGTTAATGTTGCCCTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACTATGACCTGGATCACCTCTAGACTCTGTTAATGTTGCCCTTTG  750

seq1  GGAGATACAGTCTGTCAACCTTGAGCCACCAGAACTATGACATAAAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATACAGTCTGTCAACCTTGAGCCACCAGAACTATGACATAAAACAA  800

seq1  ATAGTTCTGTTTACATAGTAAGTCCATCTTTGGTATTTCATTATAATAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCTGTTTACATAGTAAGTCCATCTTTGGTATTTCATTATAATAAT  850

seq1  GCAAAAGAGAACAGCGTACCACTGAACTGCATTCTTTAAAAATTGTTAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGAGAACAGCGTACCACTGAACTGCATTCTTTAAAAATTGTTAAG  900

seq1  ACAGAAAAAAATGTACATTATGTGTATTTTTATATGATTTAAAGAATAAA  950
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAG-AAAAAATGTACATTATGTGTATTTTTATATGATTTAAAGAATAAA  949

seq1  TTTAAAATAATTTCACATTTGAAAGCAATGTGAAACACCTTGGGCCAAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATAATTTCACATTTGAAAGCAATGTGAAACACCTTGGGCCAAGT  999

seq1  CCACAATACAGACGCTGGCATGAAGCAGGTCACCATT-AGACACATTGCA  1049
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  CCACAATACAGACGCTGGCATGAAGCA-GTCACCATTAAGACACATTGCA  1048

seq1  GGGATATAAAGGCACATTCATCAACCCCAGAATTCTTCTCAGTTAAATTA  1099
       |||||| |||||||||||||| ||||||||  ||||||||||| |||||
seq2  -GGATAT-AAGGCACATTCATC-ACCCCAGA--TCTTCTCAGTT-AATTA  1092

seq1  ACATAGGTGATTGAATTCCTGAGTATGTCTAAACTATAGGCAAAGAAAAA  1149
      ||||||||||||||  | |||||  ||||| |||||||||||| ||||||
seq2  ACATAGGTGATTGA--TTCTGAGATTGTCT-AACTATAGGCAAGGAAAAA  1139

seq1  CAGGGAAGTATTTCATTCATTCATCAATTCATCCATTCACCCATTCATTC  1199
      |   | |||| ||||||||||| |||  |||| ||||  |||||||||| 
seq2  C---GGAGTA-TTCATTCATTC-TCA--TCAT-CATTTCCCCATTCATT-  1180

seq1  ACTCATTCACTCATTCACTCATCCAAAAACATTTCTTTATCGACAAGTAT  1249
       |||||||  ||     |||||| |||    |||||||   |      ||
seq2  -CTCATTCTATC-----CTCATCGAAA---CTTTCTTTGCAG------AT  1215

seq1  GCACTTGGCAGTT  1262
      | |||||||||||
seq2  G-ACTTGGCAGTT  1227


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