BAC Information

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BAC

Clone NameB6Ng01-325F16
Chromosome6 (Build37)2 (Build37)
Map Location 80,096,403 - 80,096,451118,903,589 - 118,904,483
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC621815, LOC100043392, Lrrtm4
Downstream geneLOC100043390
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325F16.bB6Ng01-325F16.g
ACCGA113433GA113434
length137903
definitionB6Ng01-325F16.b B6Ng01-325F16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,096,403 - 80,096,451)(118,903,589 - 118,904,483)
sequence
attatgtagagtaggttggatttgaatacagagagatcagcctggctctg
ccttctgaatgctggggtcaactgtgtgtgctgccaaaactgaccttggc
ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

gaattcactttgagtgttcatataaagttctttttttatttttagaaact
caaggatggacaaattacaataaaggagttcttcatacttcttcaggtcc
acatcttaatacagaaacctaggcagagcactctcccagccaaagtaagt
gcaatttcttggcaaacattcatcaaaatatcaccagcccacattaatat
atcattctttttttattgtcattgttgttgttagttaagttaggttgtac
caatgcaaacatttattaaaagataaaatcatgaactagggatgtagctc
agttggtagaggcctacctgctatgagtgaagcctcaagtctgccaagtc
taacatcgcaaatttggatgctctggtgatgttccctttcctcacactga
tgtacttgcagtcccagctgtgatctctctaaacattccagtgatgcctt
ttgaggcaagatctcagatccagcttgcagctctcccagtttgacatccg
tgagtgttttttctccatcagtggtataactaacaatatcttgatgtcaa
tagatccaagtcatactcaagaagaaaagagacttgaaaagtcatagata
tcaaaagaaatgggtatatgtagatcatgggaaatgaggtttatagctgt
ggacatcatctgtcccaagatttggatgactgtaagtctctgtagagtag
aagtgggaaacatgtttttagtgggattggagatgttgctagcctttcat
agacaaatgtctgtagctcccttatatttctgtgtgtttgtaaggagctc
agctggcttgccactagtagcgggtgcttttataggttatccttgaatcc
ttgcatctttatgggagaagttcagctataatactgtaacccataaagta
tta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_80096403_80096451
seq2: B6Ng01-325F16.b_121_190 (reverse)

seq1  CACACACACACACACACACACACACACACACACACA--------------  36
      ||||||||||||||||||||||||||||||||||||              
seq2  CACACACACACACACACACACACACACACACACACAAGCCAAGGTCAGTT  50

seq1  -------CACACACAGTTGA  49
             |||||||||||||
seq2  TTGGCAGCACACACAGTTGA  70


seq1: chr2_118903589_118904483
seq2: B6Ng01-325F16.g_68_970

seq1  GAATTCACTTTGAGTGTTCATATAAAGTTCTTTTTTTATTTTTAGAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGAGTGTTCATATAAAGTTCTTTTTTTATTTTTAGAAACT  50

seq1  CAAGGATGGACAAATTACAATAAAGGAGTTCTTCATACTTCTTCAGGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATGGACAAATTACAATAAAGGAGTTCTTCATACTTCTTCAGGTCC  100

seq1  ACATCTTAATACAGAAACCTAGGCAGAGCACTCTCCCAGCCAAAGTAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTAATACAGAAACCTAGGCAGAGCACTCTCCCAGCCAAAGTAAGT  150

seq1  GCAATTTCTTGGCAAACATTCATCAAAATATCACCAGCCCACATTAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTCTTGGCAAACATTCATCAAAATATCACCAGCCCACATTAATAT  200

seq1  ATCATTCTTTTTTTATTGTCATTGTTGTTGTTAGTTAAGTTAGGTTGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCTTTTTTTATTGTCATTGTTGTTGTTAGTTAAGTTAGGTTGTAC  250

seq1  CAATGCAAACATTTATTAAAAGATAAAATCATGAACTAGGGATGTAGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCAAACATTTATTAAAAGATAAAATCATGAACTAGGGATGTAGCTC  300

seq1  AGTTGGTAGAGGCCTACCTGCTATGAGTGAAGCCTCAAGTCTGCCAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTAGAGGCCTACCTGCTATGAGTGAAGCCTCAAGTCTGCCAAGTC  350

seq1  TAACATCGCAAATTTGGATGCTCTGGTGATGTTCCCTTTCCTCACACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCGCAAATTTGGATGCTCTGGTGATGTTCCCTTTCCTCACACTGA  400

seq1  TGTACTTGCAGTCCCAGCTGTGATCTCTCTAAACATTCCAGTGATGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTGCAGTCCCAGCTGTGATCTCTCTAAACATTCCAGTGATGCCTT  450

seq1  TTGAGGCAAGATCTCAGATCCAGCTTGCAGCTCTCCCAGTTTGACATCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCAAGATCTCAGATCCAGCTTGCAGCTCTCCCAGTTTGACATCCG  500

seq1  TGAGTGTTTTTTCTCCATCAGTGGTATAACTAACAATATCTTGATGTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTTTTTTCTCCATCAGTGGTATAACTAACAATATCTTGATGTCAA  550

seq1  TAGATCCAAGTCATACTCAAGAAGAAAAGAGACTTGAAAAGTCATAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCAAGTCATACTCAAGAAGAAAAGAGACTTGAAAAGTCATAGATA  600

seq1  TCAAAAGAAATGGGTATATGTAGATCATGGGAAATGAGGTTTATAGCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGAAATGGGTATATGTAGATCATGGGAAATGAGGTTTATAGCTGT  650

seq1  GGACATCATCTGTCCCAAGATTTGGATGACTGTAAGTCTCTGTAGAGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCATCTGTCCCAAGATTTGGATGACTGTAAGTCTCTGTAGAGTAG  700

seq1  AAGTGGGAAACATGTTTTTAGTGGGATTGGAGATGTTGCTAGCC-TTCAT  749
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGTGGGAAACATGTTTTTAGTGGGATTGGAGATGTTGCTAGCCTTTCAT  750

seq1  AGAC-AATGTCTGTAGCTCCCTTATATTTCTGTGTG-TTGT-AGGAGCTC  796
      |||| ||||||||||||||||||||||||||||||| |||| ||||||||
seq2  AGACAAATGTCTGTAGCTCCCTTATATTTCTGTGTGTTTGTAAGGAGCTC  800

seq1  AGCTGGCT--GCACTAGTAGCGGGTGCTTTTATA-GTTATCCTTG-ATCC  842
      ||||||||   ||||||||||||||||||||||| |||||||||| ||||
seq2  AGCTGGCTTGCCACTAGTAGCGGGTGCTTTTATAGGTTATCCTTGAATCC  850

seq1  TTGCATCTTTAT-GGAGAAGTTCAAGCTAAAATACTGTAACCCATAAAGT  891
      |||||||||||| |||||||||| ||||| ||||||||||||||||||||
seq2  TTGCATCTTTATGGGAGAAGTTC-AGCTATAATACTGTAACCCATAAAGT  899

seq1  ATAA  895
      || |
seq2  ATTA  903


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