BAC Information

Click to search

BAC

Clone NameB6Ng01-325G19
Chromosome6 (Build37)
Map Location 78,996,158 - 78,997,079
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
Downstream geneLOC384440, LOC621815, LOC100043392, Lrrtm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325G19.bB6Ng01-325G19.g
ACCGA113487GA113488
length9261,151
definitionB6Ng01-325G19.b B6Ng01-325G19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaacaacaccatcttctgtcacatatgttgctctatgtgtattc
tttggttgatggtccagttcctggaaactctgggggatctggcctgttga
cactgttgctccctctgtggggttgcaaacaccctcagctccttcagtcc
ctccttcatctcctctatcatgggtccccgagctcagtccaatgattggc
tgtgagcttcctccttggtatttgtcagactgtgttctaactgaggatca
catattggccacacactgtacattcaatttacaaacccctttgtttctat
ccatgtatgcaaggattcgtacagtgcctacctgtcctaaagaatgatgc
aatagcatgaactgaggtctctcattctccgtcttaaccaccatgaatct
aagtagtcatgacacatgcttctctagagactgttaggtttttttttgtt
tgtttgttttggtttggttttttggttttttgttttttttttttttgttt
ttttttttttgtattgaaaaagtacactactgtcatctttctgtatactt
gactttctttttggttttctgcttacaaaacttttgattcttattgacaa
gctcttatgactaattcagatcaatccttgattgttcttttcttgataag
agagtcactagattaggcttgcaagtgacaagccagtaaaaacataatta
aaagtaactagataaggagaaaaaatatggtatcaggtgatagggcttaa
aggatagaaactattttagtctttgtttgtgatgggagctatgcatatac
atatgaatttagtttttgttatcaagttgacacaaggtctcttgtgaata
gagaacctcattgaaaattaacttaaatagattggcctgtggacatattg
taagacactatccttgactgctgttt

gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgttgagaaagaggaacatccctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcgattcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggagagctagagaaagtagccaagagctaaagggatctgcaaccctat
aggtggaacaacatatgactaccagtaccccgagctctgactctagctgc
atatatatcaaagatgctagtcgcatcactgcaagagagcccatgactgc
aaactttaatgcccagttacaggcaacccaggcaaaagggaatggggtgc
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_78996158_78997079
seq2: B6Ng01-325G19.b_42_967

seq1  GAATTCCAACAACACCATCTTCTGTCACATATGTTGCTCTATGTGTATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACAACACCATCTTCTGTCACATATGTTGCTCTATGTGTATTC  50

seq1  TTTGGTTGATGGTCCAGTTCCTGGAAACTCTGGGGGATCTGGCCTGTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTGATGGTCCAGTTCCTGGAAACTCTGGGGGATCTGGCCTGTTGA  100

seq1  CACTGTTGCTCCCTCTGTGGGGTTGCAAACACCCTCAGCTCCTTCAGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTGCTCCCTCTGTGGGGTTGCAAACACCCTCAGCTCCTTCAGTCC  150

seq1  CTCCTTCATCTCCTCTATCATGGGTCCCCGAGCTCAGTCCAATGATTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCATCTCCTCTATCATGGGTCCCCGAGCTCAGTCCAATGATTGGC  200

seq1  TGTGAGCTTCCTCCTTGGTATTTGTCAGACTGTGTTCTAACTGAGGATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTTCCTCCTTGGTATTTGTCAGACTGTGTTCTAACTGAGGATCA  250

seq1  CATATTGGCCACACACTGTACATTCAATTTACAAACCCCTTTGTTTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGGCCACACACTGTACATTCAATTTACAAACCCCTTTGTTTCTAT  300

seq1  CCATGTATGCAAGGATTCGTACAGTGCCTACCTGTCCTAAAGAATGATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTATGCAAGGATTCGTACAGTGCCTACCTGTCCTAAAGAATGATGC  350

seq1  AATAGCATGAACTGAGGTCTCTCATTCTCCGTCTTAACCACCATGAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCATGAACTGAGGTCTCTCATTCTCCGTCTTAACCACCATGAATCT  400

seq1  AAGTAGTCATGACACATGCTTCTCTAGAGACTGTTAGGTTTTTTTTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTCATGACACATGCTTCTCTAGAGACTGTTAGGTTTTTTTTTGTT  450

seq1  TGTTTGTTTTGGTTTGGTTTTTTGGTTTTTTGTTTTTTTTTTTTTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTGGTTTGGTTTTTTGGTTTTTTGTTTTTTTTTTTTTTGTTT  500

seq1  TTTTTTTTTTGTATTGAAAAAGTACACTACTGTCATCTTTCTGTATACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGTATTGAAAAAGTACACTACTGTCATCTTTCTGTATACTT  550

seq1  GACTTTCTTTTTGGTTTTCTGCTTACAAAACTTTTGATTCTTATTGACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCTTTTTGGTTTTCTGCTTACAAAACTTTTGATTCTTATTGACAA  600

seq1  GCTCTTATGACTAATTCAGATCAATCCTTGATTGTTCTTTTCTTGATAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTATGACTAATTCAGATCAATCCTTGATTGTTCTTTTCTTGATAAG  650

seq1  AGAGTCACTAGATTAGGCTTGCAAGTGACAAGCCAGT-AAAACATAATTA  699
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAGTCACTAGATTAGGCTTGCAAGTGACAAGCCAGTAAAAACATAATTA  700

seq1  AAAGTAACTAGATAAGGAGAAAAAATATGGTATCAGGTGATAGGGC-TAA  748
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAAGTAACTAGATAAGGAGAAAAAATATGGTATCAGGTGATAGGGCTTAA  750

seq1  AGGATAGAAACTATTTTAGTCTTTG-TTGTGATGGGAGCTATGCATATAC  797
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGGATAGAAACTATTTTAGTCTTTGTTTGTGATGGGAGCTATGCATATAC  800

seq1  ATATGAA-TTAGTTTTTGTTATCAAGTTGACACAA-GTCTCTTGGGAATA  845
      ||||||| ||||||||||||||||||||||||||| |||||||| |||||
seq2  ATATGAATTTAGTTTTTGTTATCAAGTTGACACAAGGTCTCTTGTGAATA  850

seq1  GAGAACCTCAGTTGAAAATTAACTTAAATAGATTGGCCTGTGGACATATT  895
      |||||||||| ||||||||||||||||||||||||||||||||||||| |
seq2  GAGAACCTCA-TTGAAAATTAACTTAAATAGATTGGCCTGTGGACATA-T  898

seq1  TGTAGGACACTAT-CTTGACTGCTGTTT  922
      |||| |||||||| ||||||||||||||
seq2  TGTAAGACACTATCCTTGACTGCTGTTT  926


| Home | SequenceCutter | Blast | Download |