BAC Information

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BAC

Clone NameB6Ng01-325I23
Chromosome6 (Build37)
Map Location 88,143,063 - 88,273,057
singlet/doubletdoublet
Overlap geneGata2, Dnajb8, Eefsec
Upstream geneAntxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1
Downstream geneRuvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325I23.bB6Ng01-325I23.g
ACCGA113587GA113588
length1,124247
definitionB6Ng01-325I23.b B6Ng01-325I23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,271,938 - 88,273,057)(88,143,063 - 88,143,309)
sequence
gaattcactatgtagccaagatggcctcaaaaatcacaaagatatgcctg
cctctacttcacaagtgcttggattatatgtaacaacgcctggcattcat
ctgccgcttttccttttaaattttgtttatgcagtgttggctttaacaat
tcccttttgtacacgatgccaagcctaccattatttgtattctgactgaa
tatgccaccatgcctccacttcactctgcctccctgggcttcatgtccct
ttcttaccctgggagggtctcacaacctctcctcagagatccatcagcac
caccttaggtgctctccactgagaactgctacttcccagatgcccctggg
gtcctttacctgtgcaactggttaaggaggagtttctcatctcaggttct
aggctctttctctcgggtctttaaggaattctttgtctatacagttttta
aagtccccccacacttttcccaagtgttcctgtctgtaagatgggtagtt
ttaaagcctttggagtcgccaggacttgcgctccctatttcatgttttct
cacctgctttggataacaccggccttttagttaattcttactctctgaca
ggcaatgaaactaaggctcaggatggcgactctcccaaggtaacacagtt
gaagcagtgatttgctaagctatgattcacacttacctcaggggtcccta
attcccaagtctttatttgttgtttctgttagcagcagccatagcactgt
gggtggattccaggtcaccctgtatttctggcttttgaggtgaactatgg
cacataatgtaacctggtaactagacttattttgtgcttattggaagcag
actgcagtgggctcaaaggtcaagcaaacagccttctggccagtaccttg
caaccctcccaggctcctcgagtgggggcggatctgctgcctggaatgta
gcttggccacatgcagcgtctcctgtgctgccctccaagctttacctcag
ctctagagcactccggacaagtgtttctagtcctcagttctgtgtccccg
ttcagagacagttagatggagtcagagaacttggagaaaatgaaatccag
ttcagaagtcccttacctcttggg
tcattgctatctagctcaggtgcctccttaagttgtagactgccacgagg
cttcctcccttctaaggacaaacgttttgctcttcttgtggctctctctg
atgcaaaaggttcaccaagaatgggccagaaactccattcctaaaatgct
tctgagttgggaactggcatctgtggggaagaatgtgggaaagcatctac
acatagccaaatgtgcaggaaggatgggaggtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_88271938_88273057
seq2: B6Ng01-325I23.b_44_1167 (reverse)

seq1  CCCAAGA-GTAAGGGAC-TCTGGACTGGATTTCATTTTTCTCCAAG-TCT  47
      ||||||| ||||||||| |||| ||||||||||| ||||||||||| |||
seq2  CCCAAGAGGTAAGGGACTTCTGAACTGGATTTCA-TTTTCTCCAAGTTCT  49

seq1  CTGGCTCCATCT-ACTGTCTCTGAAC-GCGACACAGAACTGAGG-CTAGA  94
      ||| |||||||| ||||||||||||| | ||||||||||||||| |||||
seq2  CTGACTCCATCTAACTGTCTCTGAACGGGGACACAGAACTGAGGACTAGA  99

seq1  AACAC-TGTCCGGAGTGCTCTAGAGCTGAGGTAAAGCTTGGAGGGCAGCA  143
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTGTCCGGAGTGCTCTAGAGCTGAGGTAAAGCTTGGAGGGCAGCA  149

seq1  CAGGAGACGCCTGCATGTGGCCAAGCTACATTCCAGGCAGCAGATCCGCC  193
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGACG-CTGCATGTGGCCAAGCTACATTCCAGGCAGCAGATCCGCC  198

seq1  CCCACTCGAGGAGCCTGGGAGGGTTGCAAGGTACTGGCCAGAAGGCTGTT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCGAGGAGCCTGGGAGGGTTGCAAGGTACTGGCCAGAAGGCTGTT  248

seq1  TGCTTGACCTTTGAGCCCACTGCAGTCTGCTTCCAATTAAGCACAAAATA  293
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGCTTGACCTTTGAGCCCACTGCAGTCTGCTTCCAA-TAAGCACAAAATA  297

seq1  AGTCTAGTTACCAGGTTACATTATGTGCCATAGTTCACCTCAAAAGCCAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGTTACCAGGTTACATTATGTGCCATAGTTCACCTCAAAAGCCAG  347

seq1  AAATACAGGGTGACCTGGAATCCACCCACAGTGCTATGGCTGCTGCTAAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGGGTGACCTGGAATCCACCCACAGTGCTATGGCTGCTGCTAAC  397

seq1  AGAAACAACAAATAAAGACTTGGGAATTAGGGACCCCTGAGGTAAGTGTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAACAAATAAAGACTTGGGAATTAGGGACCCCTGAGGTAAGTGTG  447

seq1  AATCATAGCTTAGCAAATCACTGCTTCAACTGTGTTACCTTGGGAGAGTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAGCTTAGCAAATCACTGCTTCAACTGTGTTACCTTGGGAGAGTC  497

seq1  GCCATCCTGAGCCTTAGTTTCATTGCCTGTCAGAGAGTAAGAATTAACTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCTGAGCCTTAGTTTCATTGCCTGTCAGAGAGTAAGAATTAACTA  547

seq1  AAAGGCCGGTGTTATCCAAAGCAGGTGAGAAAACATGAAATAGGGAGCGC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCGGTGTTATCCAAAGCAGGTGAGAAAACATGAAATAGGGAGCGC  597

seq1  AAGTCCTGGCGACTCCAAAGGCTTTAAAACTACCCATCTTACAGACAGGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTGGCGACTCCAAAGGCTTTAAAACTACCCATCTTACAGACAGGA  647

seq1  ACACTTGGGAAAAGTGTGGGGGGACTTTAAAAACTGTATAGACAAAGAAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGGGAAAAGTGTGGGGGGACTTTAAAAACTGTATAGACAAAGAAT  697

seq1  TCCTTAAAGACCCGAGAGAAAGAGCCTAGAACCTGAGATGAGAAACTCCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAAGACCCGAGAGAAAGAGCCTAGAACCTGAGATGAGAAACTCCT  747

seq1  CCTTAACCAGTTGCACAGGTAAAGGACCCCAGGGGCATCTGGGAAGTAGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAACCAGTTGCACAGGTAAAGGACCCCAGGGGCATCTGGGAAGTAGC  797

seq1  AGTTCTCAGTGGAGAGCACCTAAGGTGGTGCTGATGGATCTCTGAGGAGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCAGTGGAGAGCACCTAAGGTGGTGCTGATGGATCTCTGAGGAGA  847

seq1  GGTTGTGAGACCCTCCCAGGGTAAGAAAGGGACATGAAGCCCAGGGAGGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGAGACCCTCCCAGGGTAAGAAAGGGACATGAAGCCCAGGGAGGC  897

seq1  AGAGTGAAGTGGAGGCATGGTGGCATATTCAGTCAGAATACAAATAATGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAAGTGGAGGCATGGTGGCATATTCAGTCAGAATACAAATAATGG  947

seq1  TAGGCTTGGCATCGTGTACAAAAGGGAATTGTTAAAGCCAACACTGCATA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTTGGCATCGTGTACAAAAGGGAATTGTTAAAGCCAACACTGCATA  997

seq1  AACAAAATTTAAAAGGAAAAGCGGCAGATGAATGCCAGGCGTTGTTACAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATTTAAAAGGAAAAGCGGCAGATGAATGCCAGGCGTTGTTACAT  1047

seq1  ATAATCCAAGCACTTGTGAAGTAGAGGCAGGCATATCTTTGTGATTTTTG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCAAGCACTTGTGAAGTAGAGGCAGGCATATCTTTGTGATTTTTG  1097

seq1  AGGCCATCTTGGCTACATAGTGAATTC  1120
      |||||||||||||||||||||||||||
seq2  AGGCCATCTTGGCTACATAGTGAATTC  1124

seq1: chr6_88143063_88143309
seq2: B6Ng01-325I23.g_72_318

seq1  TCATTGCTATCTAGCTCAGGTGCCTCCTTAAGTTGTAGACTGCCACGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCTATCTAGCTCAGGTGCCTCCTTAAGTTGTAGACTGCCACGAGG  50

seq1  CTTCCTCCCTTCTAAGGACAAACGTTTTGCTCTTCTTGTGGCTCTCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCCTTCTAAGGACAAACGTTTTGCTCTTCTTGTGGCTCTCTCTG  100

seq1  ATGCAAAAGGTTCACCAAGAATGGGCCAGAAACTCCATTCCTAAAATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAAGGTTCACCAAGAATGGGCCAGAAACTCCATTCCTAAAATGCT  150

seq1  TCTGAGTTGGGAACTGGCATCTGTGGGGAAGAATGTGGGAAAGCATCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTGGGAACTGGCATCTGTGGGGAAGAATGTGGGAAAGCATCTAC  200

seq1  ACATAGCCAAATGTGCAGGAAGGATGGGAGGTGTGTGTGTGTGTGTG  247
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCCAAATGTGCAGGAAGGATGGGAGGTGTGTGTGTGTGTGTG  247