BAC Information

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BAC

Clone NameB6Ng01-325J07
Chromosome6 (Build37)
Map Location 93,655,498 - 93,809,947
singlet/doubletdoublet
Overlap geneMagi1
Upstream genePrickle2, A730049H05Rik, LOC384461, LOC100043253, LOC665831
Downstream geneLOC100043262, LOC665856, Slc25a26, Lrig1, LOC625941, EG665865, LOC100043276
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325J07.bB6Ng01-325J07.g
ACCGA113603GA113604
length4331,121
definitionB6Ng01-325J07.b B6Ng01-325J07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,809,509 - 93,809,947)(93,655,498 - 93,656,622)
sequence
tatcccccaccaaaaaaggagggttgttgaatgaataaagaaaaaagtaa
tatttttacaataaagatatctgtcagagctaatctaaattgttctgttt
gctgttaggccataatctctttgcaatatcggcaagaacgaaacactagt
catcaaactgtagggtaagatccatacctaccgcagagagcagattctgg
gtggccactccagtttaatgtagaaactgcctctagctactaagcctcca
aatacatgacgtaatagaattataccctgcatagctcatagattaaatca
gacttaagtttcccatccatcttgaggtgcttacaaaaaggcgaaaacac
cagtgttgttgtgttagacataatggacatgatgtatctgagatagtgaa
acactggagtgtgtgtgtgtgtgtgtgtggggg
gaattccctccatcgagatattcctttttttttttttttttttaatgttc
ttaaaagaggaaatacaaaataacttagggcaatgagagaaacagttttg
agattaagcaaaatactaattcaaaggcaagattgatacaggttcatcag
taggtaccatggaaagaagagtatctgtgatagacagaataattatactg
ggggcgggtggattttcattattctcacttagtagagaaataaaaaaaat
ctatgtagctcttaacagccattgggctgctactatcactctatcacaga
acctccagtccccaaagagtcgttgattctccctcatgttcctgattgct
ttgatgcgacaccaagtacaaagagcaaaactgaaagatttccaaatgtt
tgtctcatctccaccacttgagcaatgtcagtgcttatagcaactggata
tagccatactggatattccaatttcttttcctggtgagaactcttaaaag
ttgaatatccaaatcccaagaaatactgctgctttggggtaaatatgcct
accactgagcatgtgcttagagcatcctgtcaatccaggaggacgcacca
atagttcagggaatgatttactggatcacaaaatgactggaccacggaaa
actcaatcataatgtgttccgtactgaagaaagcagggccatggtcaata
aagtgatcactcaacatcccctgaagttggatcatcgactgaagaagcca
catggttagagagagatgtgaagggaatatggaacgttttccttcagaag
gcagtccttcagtggtattttgaagagaaatcagttagaggggagtcctg
gtatgaagtccaggtttataccagttggtcatccctcatctgaaaacctc
aaatgctctaaaacccaaagctcgtaagtatgacgtaataccacacaaag
aaaaggccatgccataaagcttacattcacaaataaaatcactgcagtac
agtttaaaatgacattctagctttgcgtgtaaggaaatatgaaacataac
cgatttgaaatttaagactcaagtcccattctcagaactatctcatatga
tagcaaatattcaaaatctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_93809509_93809947
seq2: B6Ng01-325J07.b_43_481 (reverse)

seq1  CCCCCACACACACACACACACACACTCCAGTGTTTCACTATCTCAGATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACACACACACACACACACACTCCAGTGTTTCACTATCTCAGATAC  50

seq1  ATCATGTCCATTATGTCTAACACAACAACACTGGTGTTTTCGCCTTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTCCATTATGTCTAACACAACAACACTGGTGTTTTCGCCTTTTTG  100

seq1  TAAGCACCTCAAGATGGATGGGAAACTTAAGTCTGATTTAATCTATGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACCTCAAGATGGATGGGAAACTTAAGTCTGATTTAATCTATGAGC  150

seq1  TATGCAGGGTATAATTCTATTACGTCATGTATTTGGAGGCTTAGTAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGGGTATAATTCTATTACGTCATGTATTTGGAGGCTTAGTAGCTA  200

seq1  GAGGCAGTTTCTACATTAAACTGGAGTGGCCACCCAGAATCTGCTCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGTTTCTACATTAAACTGGAGTGGCCACCCAGAATCTGCTCTCTG  250

seq1  CGGTAGGTATGGATCTTACCCTACAGTTTGATGACTAGTGTTTCGTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAGGTATGGATCTTACCCTACAGTTTGATGACTAGTGTTTCGTTCTT  300

seq1  GCCGATATTGCAAAGAGATTATGGCCTAACAGCAAACAGAACAATTTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGATATTGCAAAGAGATTATGGCCTAACAGCAAACAGAACAATTTAGA  350

seq1  TTAGCTCTGACAGATATCTTTATTGTAAAAATATTACTTTTTTCTTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCTGACAGATATCTTTATTGTAAAAATATTACTTTTTTCTTTATT  400

seq1  CATTCAACAACCCTCCTTTTTTGGTGGGGGATAGAATTC  439
      |||||||||||||||||||||||||||||||||||||||
seq2  CATTCAACAACCCTCCTTTTTTGGTGGGGGATAGAATTC  439

seq1: chr6_93655498_93656622
seq2: B6Ng01-325J07.g_65_1185

seq1  GAATTCCCTCCATCGAGATATTCCTTTTTTTTTTTTTTTTTTTAATGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCCATCGAGATATTCCTTTTTTTTTTTTTTTTTTTAATGTTC  50

seq1  TTAAAAGAGGAAATACAAAATAACTTAGGGCAATGAGAGAAACAGTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGAGGAAATACAAAATAACTTAGGGCAATGAGAGAAACAGTTTTG  100

seq1  AGATTAAGCAAAATACTAATTCAAAGGCAAGATTGATACAGGTTCATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAGCAAAATACTAATTCAAAGGCAAGATTGATACAGGTTCATCAG  150

seq1  TAGGTACCATGGAAAGAAGAGTATCTGTGATAGACAGAATAATTATACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTACCATGGAAAGAAGAGTATCTGTGATAGACAGAATAATTATACTG  200

seq1  GGGGCGGGTGGATTTTCATTATTCTCACTTAGTAGAGAAATAAAAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGGGTGGATTTTCATTATTCTCACTTAGTAGAGAAATAAAAAAAAT  250

seq1  CTATGTAGCTCTTAACAGCCATTGGGCTGCTACTATCACTCTATCACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAGCTCTTAACAGCCATTGGGCTGCTACTATCACTCTATCACAGA  300

seq1  ACCTCCAGTCCCCAAAGAGTCGTTGATTCTCCCTCATGTTCCTGATTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAGTCCCCAAAGAGTCGTTGATTCTCCCTCATGTTCCTGATTGCT  350

seq1  TTGATGCGACACCAAGTACAAAGAGCAAAACTGAAAGATTTCCAAATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCGACACCAAGTACAAAGAGCAAAACTGAAAGATTTCCAAATGTT  400

seq1  TGTCTCATCTCCACCACTTGAGCAATGTCAGTGCTTATAGCAACTGGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCATCTCCACCACTTGAGCAATGTCAGTGCTTATAGCAACTGGATA  450

seq1  TAGCCATACTGGATATTCCAATTTCTTTTCCTGGTGAGAACTCTTAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATACTGGATATTCCAATTTCTTTTCCTGGTGAGAACTCTTAAAAG  500

seq1  TTGAATATCCAAATCCCAAGAAATACTGCTGCTTTGGGGTAAATATGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATATCCAAATCCCAAGAAATACTGCTGCTTTGGGGTAAATATGCCT  550

seq1  ACCACTGAGCATGTGCTTAGAGCATCCTGTCAATCCAGGAGGACGCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGAGCATGTGCTTAGAGCATCCTGTCAATCCAGGAGGACGCACCA  600

seq1  ATAGTTCAGGGAATGATTTACTGGATCACAAAATGACTGGACCACGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCAGGGAATGATTTACTGGATCACAAAATGACTGGACCACGGAAA  650

seq1  ACTCAATCATAATGTGTTCCGTACTGAAGAAAGCAGGGCCATGGTCAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATCATAATGTGTTCCGTACTGAAGAAAGCAGGGCCATGGTCAATA  700

seq1  AAGTGATCACTCAACATCCCCTGAAGTTGGATCATCGACTGAAGAAGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATCACTCAACATCCCCTGAAGTTGGATCATCGACTGAAGAAGCCA  750

seq1  CATGGTTAGAGAGAGATGTGAAGGGAATATGGAACGTTTTCCTTCAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTAGAGAGAGATGTGAAGGGAATATGGAACGTTTTCCTTCAGAAG  800

seq1  GCAGTCCTTCAGTGGTATTTTGAAGAGAAATCAGTTAGAGGGGAGTCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCCTTCAGTGGTATTTTGAAGAGAAATCAGTTAGAGGGGAGTCCTG  850

seq1  GTATGAAGTCCAGGTTTATACCAGTTGGTCATCCCTCATCTGAAAACCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAGTCCAGGTTTATACCAGTTGGTCATCCCTCATCTGAAAACCTC  900

seq1  AAATGCTCTAAAACCCAAAGCTCGTAAGTATGACGTAATACCACACAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTCTAAAACCCAAAGCTCGTAAGTATGACGTAATACCACACAAAG  950

seq1  AAAAGGCCATGCCATAAAGCTTACATTCACAAATAAAATCACTGCAAGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAAGGCCATGCCATAAAGCTTACATTCACAAATAAAATCACTGC-AGTA  999

seq1  CAGTTTAAAATGACATTCTAGCTTTGCGTGTAAGGGATATATGAAACATA  1050
      ||||||||||||||||||||||||||||||||| ||| ||||||||||| 
seq2  CAGTTTAAAATGACATTCTAGCTTTGCGTGTAA-GGAAATATGAAACAT-  1047

seq1  AACGGATTTGAAATTT-AGACTCAGGTCCCATTCTCAG-ACTATCTCATA  1098
      ||| |||||||||||| ||||||| ||||||||||||| |||||||||||
seq2  AACCGATTTGAAATTTAAGACTCAAGTCCCATTCTCAGAACTATCTCATA  1097

seq1  TGGATAAGCAAATATTTCAAAATCTGA  1125
      | ||| |||||||| ||||||||||||
seq2  T-GAT-AGCAAATA-TTCAAAATCTGA  1121