BAC Information

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BAC

Clone NameB6Ng01-325N05
Chromosome6 (Build37)
Map Location 34,950,602 - 35,095,886
singlet/doubletdoublet
Overlap geneCnot4
Upstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik
Downstream geneNup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312, LOC100039327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325N05.bB6Ng01-325N05.g
ACCGA113784GA113785
length8391,144
definitionB6Ng01-325N05.b B6Ng01-325N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,095,053 - 35,095,886)(34,950,602 - 34,951,738)
sequence
gaattcttattgcagtcacacaggcctggggttcagttctcagcacccac
atggaggctcacaaccatcttcggtaactccagttctaggtactctatcg
ccatctgctggcctctgtgggctcctgcataaagaaggtgcaaatgaact
gatgcaggtcagacacatacacatgaatacaaataaatcccttactcttc
acattctagttgggtgttcttcaattctgtgatgctacttttaaagatgt
tttattttatttgtgtctgtgtatgtatctgtgtgtgtatgcactcatgc
atgtgggcacacagagaagccagaagggggagttggtgtgtatatgcacc
caagcatgtgggcacccatagaggacagaaaggggagttggctcctctgg
cactggttgtgagccacctggcagagatgataggaatgagactatatcct
ccgcaagagcagtgagtgctattaactgctgagatacctctccagcctta
tgtgatgtcacttcaaatatttgtttgtttgtaatgatgtcatttttaat
agtttctggccaggtattatggtgcacaccttaaaaccccgtgcttggtc
ctttggatgcagaggcaggtagatctctgtcagtttaaggacagcttggt
ctagctcatgagatcctgactcaaaaaatgtactaattcttcgaatgaat
gttcaaggatgaacttttttttcctatattgaaaagaggcaatggggatt
gctttgtattctctgataaattgttttgtttctactttttgtctagtcta
cttcctgtttttgttttcttccctttgggtcttaaattt
gaattcagactccctgaactctgtgttcaaacagggtagcagagggaggc
cagaccttggctcataaccaccctcctatcattgagttgctcgtccattg
ttctctgccccagaactccggggtgtgcgcaagcagatgctccagtccaa
acatctaagagctgcccactctctacctccctggcaggaaaacaaaaggt
agatatgagagggcaatcagaaaatatggagcacaggcaccaaataatga
cccatagaaaactattcatagcagttggtcaaaggcaggaagttatgaca
gagcttggaagtcttgacagcagtatgcattcagtactccaaccacatgt
ggccgggaatagctggaaggcagctcccagcgggtccagaatcttcccag
tggtgaccagaacctaggcccacccctagcccatggtttccctaatagct
aagcgttttcctttatttaaactgacaaaaccaaggagcaaaatagaagg
tttcatgcattgtgtgggaagggagactatgggacatgctggacagctac
tggacatgcaagactaacaaacagaaggcggaaaggtacctccatggccc
tcatctctgaatatcagacagatagggaaaaaggcttacagccctctcag
caggcgctagcttaggggccagctactcacagaaagagcagaagagagga
gagccacactccaggaaggtacaggtcagggttctctccctcccttcctc
ttcctcttcctcttcctccttccttccttccttcctcttcttcctttctc
tattcttcccttcttctctctctgtccctctctttgtttttgataaaagg
ccttcctacagcttagctggtcttgaactcttgacttcctctgagcctgg
agtactagaattatagacaagcatcagtacagccagcttcttctagttgc
tgccccccccccccaatgtgttccctttaccaacccacttgctccatgcc
ctaacttattgttcaacaataccatttgataatggaggagccagacagtc
tgctgtaatccagagctagttaataaggaagacatttctattccttggct
gaagtcaggaacaggactgggagcattgaacccttgaagaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_35095053_35095886
seq2: B6Ng01-325N05.b_48_886 (reverse)

seq1  AAAATTAAGACCCAAAGGGAAGAAAACAAAAACA-GAAGTAGACTAGACA  49
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAATTTAAGACCCAAAGGGAAGAAAACAAAAACAGGAAGTAGACTAGACA  50

seq1  AAAAGTAGACAC-AAACAA-TTATCAGAGAATACAAAGCAAT-CCCATTG  96
      ||||||||| || |||||| |||||||||||||||||||||| |||||||
seq2  AAAAGTAGAAACAAAACAATTTATCAGAGAATACAAAGCAATCCCCATTG  100

seq1  CCTCTTTTC-ATATAGGAAAAAAAAGTTCATCCTTGAACATTCATTCGAA  145
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTTCAATATAGGAAAAAAAAGTTCATCCTTGAACATTCATTCGAA  150

seq1  GAATTAGTACATTTTTTGAGTCAGGATCTCATGAGCTAGACCAAGCTGTC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGTACATTTTTTGAGTCAGGATCTCATGAGCTAGACCAAGCTGTC  200

seq1  CTTAAACTGACAGAGATCTACCTGCCTCTGCATCCAAAGGACCAAGCACG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACTGACAGAGATCTACCTGCCTCTGCATCCAAAGGACCAAGCACG  250

seq1  GGGTTTTAAGGTGTGCACCATAATACCTGGCCAGAAACTATTAAAAATGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTAAGGTGTGCACCATAATACCTGGCCAGAAACTATTAAAAATGA  300

seq1  CATCATTACAAACAAACAAATATTTGAAGTGACATCACATAAGGCTGGAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTACAAACAAACAAATATTTGAAGTGACATCACATAAGGCTGGAG  350

seq1  AGGTATCTCAGCAGTTAATAGCACTCACTGCTCTTGCGGAGGATATAGTC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATCTCAGCAGTTAATAGCACTCACTGCTCTTGCGGAGGATATAGTC  400

seq1  TCATTCCTATCATCTCTGCCAGGTGGCTCACAACCAGTGCCAGAGGAGCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCTATCATCTCTGCCAGGTGGCTCACAACCAGTGCCAGAGGAGCC  450

seq1  AACTCCCCTTTCTGTCCTCTATGGGTGCCCACATGCTTGGGTGCATATAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCCTTTCTGTCCTCTATGGGTGCCCACATGCTTGGGTGCATATAC  500

seq1  ACACCAACTCCCCCTTCTGGCTTCTCTGTGTGCCCACATGCATGAGTGCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAACTCCCCCTTCTGGCTTCTCTGTGTGCCCACATGCATGAGTGCA  550

seq1  TACACACACAGATACATACACAGACACAAATAAAATAAAACATCTTTAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACAGATACATACACAGACACAAATAAAATAAAACATCTTTAAA  600

seq1  AGTAGCATCACAGAATTGAAGAACACCCAACTAGAATGTGAAGAGTAAGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCATCACAGAATTGAAGAACACCCAACTAGAATGTGAAGAGTAAGG  650

seq1  GATTTATTTGTATTCATGTGTATGTGTCTGACCTGCATCAGTTCATTTGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATTTGTATTCATGTGTATGTGTCTGACCTGCATCAGTTCATTTGC  700

seq1  ACCTTCTTTATGCAGGAGCCCACAGAGGCCAGCAGATGGCGATAGAGTAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTTTATGCAGGAGCCCACAGAGGCCAGCAGATGGCGATAGAGTAC  750

seq1  CTAGAACTGGAGTTACCGAAGATGGTTGTGAGCCTCCATGTGGGTGCTGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACTGGAGTTACCGAAGATGGTTGTGAGCCTCCATGTGGGTGCTGA  800

seq1  GAACTGAACCCCAGGCCTGTGTGACTGCAATAAGAATTC  834
      |||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAACCCCAGGCCTGTGTGACTGCAATAAGAATTC  839

seq1: chr6_34950602_34951738
seq2: B6Ng01-325N05.g_71_1214

seq1  GAATTCAGACTCCCTGAACTCTGTGTTCAAACAGGGTAGCAGAGGGAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACTCCCTGAACTCTGTGTTCAAACAGGGTAGCAGAGGGAGGC  50

seq1  CAGACCTTGGCTCATAACCACCCTCCTATCATTGAGTTGCTCGTCCATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTTGGCTCATAACCACCCTCCTATCATTGAGTTGCTCGTCCATTG  100

seq1  TTCTCTGCCCCAGAACTCCGGGGTGTGCGCAAGCAGATGCTCCAGTCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCCCCAGAACTCCGGGGTGTGCGCAAGCAGATGCTCCAGTCCAA  150

seq1  ACATCTAAGAGCTGCCCACTCTCTACCTCCCTGGCAGGAAAACAAAAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTAAGAGCTGCCCACTCTCTACCTCCCTGGCAGGAAAACAAAAGGT  200

seq1  AGATATGAGAGGGCAATCAGAAAATATGGAGCACAGGCACCAAATAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGAGAGGGCAATCAGAAAATATGGAGCACAGGCACCAAATAATGA  250

seq1  CCCATAGAAAACTATTCATAGCAGTTGGTCAAAGGCAGGAAGTTATGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGAAAACTATTCATAGCAGTTGGTCAAAGGCAGGAAGTTATGACA  300

seq1  GAGCTTGGAAGTCTTGACAGCAGTATGCATTCAGTACTCCAACCACATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGGAAGTCTTGACAGCAGTATGCATTCAGTACTCCAACCACATGT  350

seq1  GGCCGGGAATAGCTGGAAGGCAGCTCCCAGCGGGTCCAGAATCTTCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGGGAATAGCTGGAAGGCAGCTCCCAGCGGGTCCAGAATCTTCCCAG  400

seq1  TGGTGACCAGAACCTAGGCCCACCCCTAGCCCATGGTTTCCCTAATAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACCAGAACCTAGGCCCACCCCTAGCCCATGGTTTCCCTAATAGCT  450

seq1  AAGCGTTTTCCTTTATTTAAACTGACAAAACCAAGGAGCAAAATAGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGTTTTCCTTTATTTAAACTGACAAAACCAAGGAGCAAAATAGAAGG  500

seq1  TTTCATGCATTGTGTGGGAAGGGAGACTATGGGACATGCTGGACAGCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGCATTGTGTGGGAAGGGAGACTATGGGACATGCTGGACAGCTAC  550

seq1  TGGACATGCAAGACTAACAAACAGAAGGCGGAAAGGTACCTCCATGGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATGCAAGACTAACAAACAGAAGGCGGAAAGGTACCTCCATGGCCC  600

seq1  TCATCTCTGAATATCAGACAGATAGGG-AAAAGGCTTACAGCCCTCTCAG  649
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCATCTCTGAATATCAGACAGATAGGGAAAAAGGCTTACAGCCCTCTCAG  650

seq1  CAGGCGCTAGCTTAGGGGCCAGCTACTCACAGAAAGAGCAGGAAGAGAGG  699
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGGCGCTAGCTTAGGGGCCAGCTACTCACAGAAAGAGCA-GAAGAGAGG  699

seq1  AGAGCCACACTCCAGGAAGGTACAGGTCAGGGTTCTCTCCCTCCCTTCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCACACTCCAGGAAGGTACAGGTCAGGGTTCTCTCCCTCCCTTCCT  749

seq1  CTTCCTCTTCCTCTTCCTCCTTCCTTCCTTCCTTCCTCTTCTTCCTTTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTTCCTCTTCCTCCTTCCTTCCTTCCTTCCTCTTCTTCCTTTCT  799

seq1  CTATTCTTCCCTTCTTCTCTCTCTGTCCCTCTCTTTGTTTTTTGATAAAA  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTATTCTTCCCTTCTTCTCTCTCTGTCCCTCTCTTTG-TTTTTGATAAAA  848

seq1  GGTCTTCCTACAGCTTAGGCTGGTCTTGAACTCTTGAC-TCCTCTGAGCC  898
      || |||||||||||||| |||||||||||||||||||| |||||||||||
seq2  GGCCTTCCTACAGCTTA-GCTGGTCTTGAACTCTTGACTTCCTCTGAGCC  897

seq1  TGGAGTACTAGAATTATAGACAAGCATCAGCACAGCCAGC-TCTTCTAGT  947
      |||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  TGGAGTACTAGAATTATAGACAAGCATCAGTACAGCCAGCTTCTTCTAGT  947

seq1  TGCTGCCCCCCCCCCCCATTGTGTTCCCTTTACCAACCCACTTGCTCCAT  997
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGCTGCCCCCCCCCCCCAATGTGTTCCCTTTACCAACCCACTTGCTCCAT  997

seq1  GCCCTAAC-TATTGTTCAAC-ATACCATTTGAT-ATGGAGGAG-CAG-CA  1042
      |||||||| ||||||||||| |||||||||||| ||||||||| ||| ||
seq2  GCCCTAACTTATTGTTCAACAATACCATTTGATAATGGAGGAGCCAGACA  1047

seq1  GTCTGCTGTAATCCAGAGCTAG-TAATAAGGGAAGACA-TTCTATTCCTT  1090
      |||||||||||||||||||||| |||||| |||||||| |||||||||||
seq2  GTCTGCTGTAATCCAGAGCTAGTTAATAA-GGAAGACATTTCTATTCCTT  1096

seq1  GGCTGGAAGTCAAG-ACAGGAACCTGGAGCA-TGAACCC-TGAAGGAATA  1137
      |||| ||||||| | ||||| ||  |||||| ||||||| ||||| ||||
seq2  GGCT-GAAGTCAGGAACAGG-ACTGGGAGCATTGAACCCTTGAAGAAATA  1144