BAC Information

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BAC

Clone NameB6Ng01-326A17
Chromosome6 (Build37)
Map Location 107,845,358 - 108,015,732
singlet/doubletdoublet
Overlap geneSetmar
Upstream genePpia-ps6_1128.1, Lrrn1
Downstream geneSumf1, LOC100043718, Itpr1, LOC677205, Bhlhb2, Arl8b, Edem1, EG627371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326A17.bB6Ng01-326A17.g
ACCGA113949GA113950
length6321,123
definitionB6Ng01-326A17.b B6Ng01-326A17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,845,358 - 107,845,989)(108,014,619 - 108,015,732)
sequence
gaattctccatactgacaacaaaggaaaatggtaaaaggaaattcactgt
ttgaaaattaaggcaaaaaaaataggaattagtccacaaaattagactgt
agtataggtagtgatatacctatcaagtaacacactgaaacagatgagag
tagactctcacagcacatgagactcttggtgtcatatgatcctgaaggtc
actgccatttagagtcctgtgacttcacattcacaccataacaaaatcca
gctctacttccatgtatgtttacagagcacaattttacctggctttaaaa
tgtgcttgatatatttccacattttcttttaaattacttaaagtttccca
gaaactattctaattgataaaacaaaacaaggggcctagagagatgcctc
agtggctaagaacactggctcttccagaggtcctgagtttaattcccagt
aaccacacagtggtggcttacaaccatatataatatattctgatgccctc
ttctggcatgcaggagtacatgcaaacagaacactgtgcacataaaataa
atagaaggaagaaaggaaggaaggagggaagaaaataaaagaaagcaaga
aagagagggagagggagggagggagggaggga
gaattctgctctgcagcgaagtgtgaaacaatccccttcctactcacccc
ccccccccccagcttcctactccccccagctctttagacctggctctaca
tgggcattggcctcaactactcaagatataagcagctctctggttccttc
catggaggctgtccgcaggcctctatctccgccccaacatggaagggtgc
aggctccccttggtgagaattaagaggagtcttgtagtcagcccctgtgg
ggctacaggacatccctccaacccagtctagaacagcgctggccccgcct
ggggagagaagggaaatagacaggccctttagcaccgcccctaagatcgg
tgagctgctttctagctccgcccccatataaagggcactggccccgcccc
cgggggaaagggacagccctctagcgccgccctctggctccgcccccaaa
gaaaagggcaccacccccagccctttcagccacttagccctgcctctacc
tggaaaggtttaggcctgggctccgcccccaaaggccacaagctcacagg
caagttctccaggccgcacgctacatcttgttgttctgtcggggctacag
attcctcctcagatgctgctatctcgagagaaagcttctccacaccttcc
gcagacatttatggtctcgcttcgactactcgcctgaccattttgggcct
ccgggaggatgctgggagttgtggattctgcggccctacttcctcatggg
agttgtagttttccgtcccaacaggctgcaggtgagggagatacctccct
cagcgtcgttggggtgctttttcctctggatcccactgttttaaactaga
tacatagctgataatttcagaaccacaaaaggtacaaaatttgggagaac
ttgaaatgtttttcgttttttttctggggaaccttgtgaaggcctggttg
tttgttcagcctttgagggttagtaggtggtttggaaatgtatcgtccta
gctggaggggagaaaaatacagttccagaagaatataagatctagaaccg
cgggagagctgggtgactggccacagatttgttttgaatagtcctctcct
tgtaagcttcaccatgggtccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_107845358_107845989
seq2: B6Ng01-326A17.b_48_679

seq1  GAATTCTCCATACTGACAACAAAGGAAAATGGTAAAAGGAAATTCACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATACTGACAACAAAGGAAAATGGTAAAAGGAAATTCACTGT  50

seq1  TTGAAAATTAAGGCAAAAAAAATAGGAATTAGTCCACAAAATTAGACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATTAAGGCAAAAAAAATAGGAATTAGTCCACAAAATTAGACTGT  100

seq1  AGTATAGGTAGTGATATACCTATCAAGTAACACACTGAAACAGATGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGGTAGTGATATACCTATCAAGTAACACACTGAAACAGATGAGAG  150

seq1  TAGACTCTCACAGCACATGAGACTCTTGGTGTCATATGATCCTGAAGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCTCACAGCACATGAGACTCTTGGTGTCATATGATCCTGAAGGTC  200

seq1  ACTGCCATTTAGAGTCCTGTGACTTCACATTCACACCATAACAAAATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCATTTAGAGTCCTGTGACTTCACATTCACACCATAACAAAATCCA  250

seq1  GCTCTACTTCCATGTATGTTTACAGAGCACAATTTTACCTGGCTTTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTACTTCCATGTATGTTTACAGAGCACAATTTTACCTGGCTTTAAAA  300

seq1  TGTGCTTGATATATTTCCACATTTTCTTTTAAATTACTTAAAGTTTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTGATATATTTCCACATTTTCTTTTAAATTACTTAAAGTTTCCCA  350

seq1  GAAACTATTCTAATTGATAAAACAAAACAAGGGGCCTAGAGAGATGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTATTCTAATTGATAAAACAAAACAAGGGGCCTAGAGAGATGCCTC  400

seq1  AGTGGCTAAGAACACTGGCTCTTCCAGAGGTCCTGAGTTTAATTCCCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTAAGAACACTGGCTCTTCCAGAGGTCCTGAGTTTAATTCCCAGT  450

seq1  AACCACACAGTGGTGGCTTACAACCATATATAATATATTCTGATGCCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACAGTGGTGGCTTACAACCATATATAATATATTCTGATGCCCTC  500

seq1  TTCTGGCATGCAGGAGTACATGCAAACAGAACACTGTGCACATAAAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCATGCAGGAGTACATGCAAACAGAACACTGTGCACATAAAATAA  550

seq1  ATAGAAGGAAGAAAGGAAGGAAGGAGGGAAGAAAATAAAAGAAAGCAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGGAAGAAAGGAAGGAAGGAGGGAAGAAAATAAAAGAAAGCAAGA  600

seq1  AAGAGAGGGAGAGGGAGGGAGGGAGGGAGGGA  632
      ||||||||||||||||||||||||||||||||
seq2  AAGAGAGGGAGAGGGAGGGAGGGAGGGAGGGA  632

seq1: chr6_108014619_108015732
seq2: B6Ng01-326A17.g_72_1194 (reverse)

seq1  TGGGA--CAAGGTG-AGCTTACAAGGAGAGGACCTTATCAAAAACAAATT  47
      |||||  || |||| ||||||||||||||||||  |||  |||||||| |
seq2  TGGGACCCATGGTGAAGCTTACAAGGAGAGGAC--TATTCAAAACAAA-T  47

seq1  CTGT-GCCAGTCACCCAACTTCTCCGCGGGTTCTAGATCTTTATATTC-T  95
      |||| |||||||||||| | |||||   ||||||||||| |||||||| |
seq2  CTGTGGCCAGTCACCCAGC-TCTCCCGCGGTTCTAGATC-TTATATTCTT  95

seq1  CTGG-ACTGTA-TTTTCTCCC--TCAGCTTAGACGATACATTTCCAAA-C  140
      |||| |||||| |||||||||   |||||  ||||||||||||||||| |
seq2  CTGGAACTGTATTTTTCTCCCCTCCAGCTAGGACGATACATTTCCAAACC  145

seq1  ACCTACTAAACCCTCAAAGGCTGAACAAACAACCAGG-CTTCACAAGGTT  189
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  ACCTACT-AACCCTCAAAGGCTGAACAAACAACCAGGCCTTCACAAGGTT  194

seq1  CCCCAG-AAAAAAACG-AAAACATTTCAAGTTCT-CCAAATTTTGTACCT  236
      |||||| ||||||||| ||||||||||||||||| |||||||||||||||
seq2  CCCCAGAAAAAAAACGAAAAACATTTCAAGTTCTCCCAAATTTTGTACCT  244

seq1  TTTGTGGTTCTGAAATTATCAGCTATGTATCTAGTTTAAAACAGTGGGAT  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGTTCTGAAATTATCAGCTATGTATCTAGTTTAAAACAGTGGGAT  294

seq1  CCAGAGG-AAAAGCACCCCAACGACGCTGAGGGAGGTATCTCCCTCACCT  335
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGAAAAAGCACCCCAACGACGCTGAGGGAGGTATCTCCCTCACCT  344

seq1  GCAGCCTGTTGGGACGGAAAACTACAACTCCCATGAGGAAGTAGGGCCGC  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTGTTGGGACGGAAAACTACAACTCCCATGAGGAAGTAGGGCCGC  394

seq1  AGAATCCACAACTCCCAGCATCCTCCCGGAGGCCCAAAATGGTCAGGCGA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCACAACTCCCAGCATCCTCCCGGAGGCCCAAAATGGTCAGGCGA  444

seq1  GTAGTCGAAGCGAGACCATAAATGTCTGCGGAAGGTGTGGAGAAGCTTTC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCGAAGCGAGACCATAAATGTCTGCGGAAGGTGTGGAGAAGCTTTC  494

seq1  TCTCGAGATAGCAGCATCTGAGGAGGAATCTGTAGCCCCGACAGAACAAC  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGAGATAGCAGCATCTGAGGAGGAATCTGTAGCCCCGACAGAACAAC  544

seq1  AAGATGTAGCGTGCGGCCTGGAGAACTTGCCTGTGAGCTTGTGGCCTTTG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTAGCGTGCGGCCTGGAGAACTTGCCTGTGAGCTTGTGGCCTTTG  594

seq1  GGGGCGGAGCCCAGGCCTAAACCTTTCCAGGTAGAGGCAGGGCTAAGTGG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGGAGCCCAGGCCTAAACCTTTCCAGGTAGAGGCAGGGCTAAGTGG  644

seq1  CTGAAAGGGCTGGGGGTGGTGCCCTTTTCTTTGGGGGCGGAGCCAGAGGG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGGGCTGGGGGTGGTGCCCTTTTCTTTGGGGGCGGAGCCAGAGGG  694

seq1  CGGCGCTAGAGGGCTGTCCCTTTCCCCCGGGGGCGGGGCCAGTGCCCTTT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGCTAGAGGGCTGTCCCTTTCCCCCGGGGGCGGGGCCAGTGCCCTTT  744

seq1  ATATGGGGGCGGAGCTAGAAAGCAGCTCACCGATCTTAGGGGCGGTGCTA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGGGGCGGAGCTAGAAAGCAGCTCACCGATCTTAGGGGCGGTGCTA  794

seq1  AAGGGCCTGTCTATTTCCCTTCTCTCCCCAGGCGGGGCCAGCGCTGTTCT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCTGTCTATTTCCCTTCTCTCCCCAGGCGGGGCCAGCGCTGTTCT  844

seq1  AGACTGGGTTGGAGGGATGTCCTGTAGCCCCACAGGGGCTGACTACAAGA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGGTTGGAGGGATGTCCTGTAGCCCCACAGGGGCTGACTACAAGA  894

seq1  CTCCTCTTAATTCTCACCAAGGGGAGCCTGCACCCTTCCATGTTGGGGCG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTAATTCTCACCAAGGGGAGCCTGCACCCTTCCATGTTGGGGCG  944

seq1  GAGATAGAGGCCTGCGGACAGCCTCCATGGAAGGAACCAGAGAGCTGCTT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGAGGCCTGCGGACAGCCTCCATGGAAGGAACCAGAGAGCTGCTT  994

seq1  ATATCTTGAGTAGTTGAGGCCAATGCCCATGTAGAGCCAGGTCTAAAGAG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTGAGTAGTTGAGGCCAATGCCCATGTAGAGCCAGGTCTAAAGAG  1044

seq1  CTGGGGGGAGTAGGAAGCTGGGGGGGGGGGGGGTGAGTAGGAAGGGGATT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGGAGTAGGAAGCTGGGGGGGGGGGGGGTGAGTAGGAAGGGGATT  1094

seq1  GTTTCACACTTCGCTGCAGAGCAGAATTC  1114
      |||||||||||||||||||||||||||||
seq2  GTTTCACACTTCGCTGCAGAGCAGAATTC  1123