BAC Information

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BAC

Clone NameB6Ng01-326J01
Chromosome6 (Build37)
Map Location 110,942,508 - 111,039,743
singlet/doubletdoublet
Overlap geneGrm7
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326J01.bB6Ng01-326J01.g
ACCGA114343GA114344
length1,205659
definitionB6Ng01-326J01.b B6Ng01-326J01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,038,542 - 111,039,743)(110,942,508 - 110,943,166)
sequence
gaattcataaagaattaataaaatattgacttcaaagtctgttactttat
ccttttgaggattatatgactgatttcttgagcaggagagtgtggaatga
tttaggctatatctgtatcatgtgtaggtgactgtgaagccagggaattt
caatatataaagaactttttgttttcaggataaccttatacagtttggac
acgcccacctttcagcctcggtttttgatattgttgctcatcgtattgag
atggtgtatttctatgaaactcagtgtggatttaaatcatcctccttcct
caacctacctagcactagaattagtttcagattttcattttcactgccct
ctacacaatttcgtacttctcttctcaaactgctataattttatcatctt
ttctaaccatctatttgaataaaaccaagaggaaaaatttcaactttttt
tctgtttaatgtatttcgtgtgttcttagagattcactatccacgaatac
acagtattagttctctctctttttctccccaacctcccaatttatagtga
ttaaacctgggtctctgactcaaagaaagaaatgcatataaacacattgt
gcatattttaaaatatgaataagtcacatatctgctagcaaatgaacaaa
ttgcatagtttcctttaggcttatgcaacacctgtacacattgatatgac
ttcagatgtaaaaccaccttaatattataaaaatagtattattacttttt
gcatatacatgtgtgatttttccagtaaagcagaatattccttgactaat
aggatggtttgtgaaaattccgcttgcttgacaatttcactggatctgga
gtcatctgagattgcactggttgggtctttaggaacatttcctaggagga
ctaactgagttggaagaactctgcatggagagaaggttgcaatcttccaa
ctgaagcccagataacaggaaggtctaagggtaagtgttgaattttggtt
tgtctaccttgactaatactgatgaccgcatctccctgttctggtgctct
gctgctattaccacgcacactgtccacagagttcactctttagatcatca
agcaataccgaaaaacttatgtcctcctatgatctttcaggacatgagag
tattatgcattagctctacgactgaaatctatttgagtgctctctctaca
ggctc

gaattctcatgacctagtttttcaggtctcttcatcggggctcaaccctg
agtgaggcatctgattgaaatttgattcttttcctgaaaatagctaacat
ttctctgaagccagtgaaagccatgcagaagttcatgagacttgggcata
gattagaagaaggatatgagccagtggcttaaagacactttgaaacaagt
ttatttgtataagaatggatcccttcctcccctgcatagcatttgtgaag
tgacaatgatctggaaaggcttaaaatctgatgagctaaggctttttttt
tttttcttttctcacacagcattaagcatgcctcagggaagaaataatgg
agtgaaccacagttgcaaatgtgggtgtaattttgagaagcagctattgc
attaaaagcctttccgtatatttatgaatctggaggtggggagtgaatag
tgacataggctgttcccacctcaattggactgagacaaacagcagtcaca
cccacccatccatgcccttacacaaaggagcaatgaaaagctacccatac
aataagctttgagttgaatctatggtgagtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgcgtgtgtgatgtatagaaatatttgtcttct
gtatcaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_111038542_111039743
seq2: B6Ng01-326J01.b_50_1254 (reverse)

seq1  GAGCCT-----GAGAGCAC---AATAG--CTCAGTCGTAGAGGCTAAATG  40
      ||||||     ||||||||   |||||   ||||||||||| ||| ||||
seq2  GAGCCTGTAGAGAGAGCACTCAAATAGATTTCAGTCGTAGA-GCT-AATG  48

seq1  CCTTAATACTCTCAATGTCCTAGAAGATCCCTAGAGAGACATAAG-TTTT  89
       | |||||||||| |||||||  ||||| | |||   |||||||| ||||
seq2  -CATAATACTCTC-ATGTCCTGAAAGAT-CATAGGAGGACATAAGTTTTT  95

seq1  CAGTTTGCCTTGGATGATCTAAGAAGTTGAACTCTGGTGACAGTGTGCGG  139
      | || |  ||| ||||||||||  || |||||||||  |||||||||| |
seq2  CGGTATTGCTT-GATGATCTAAAGAG-TGAACTCTGTGGACAGTGTGC-G  142

seq1  TGGTAATAGCAGCAAGAGCACCAGAACAGGGAAGATGCGGTCATCAGTAA  189
      ||||||||||||| ||||||||||||||||| ||||||||||||||||| 
seq2  TGGTAATAGCAGC-AGAGCACCAGAACAGGG-AGATGCGGTCATCAGTAT  190

seq1  TAGTCAAAGGTAGACAAACCAAAA-TCAACACCTTTCCCCTTAGACC-TC  237
      ||||| |||||||||||||||||| |||||||  || |||||||||| ||
seq2  TAGTC-AAGGTAGACAAACCAAAATTCAACAC--TTACCCTTAGACCTTC  237

seq1  CTGTTATCTGGGCTTCAG-TGGAAGATTGCAACCTTCTCT-CATGCAGAG  285
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  CTGTTATCTGGGCTTCAGTTGGAAGATTGCAACCTTCTCTCCATGCAGAG  287

seq1  -TCTTCCAACTCAGTTAGTCCTCCTAGGAAATGTTCCTAAAGACCCAACC  334
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCAACTCAGTTAGTCCTCCTAGGAAATGTTCCTAAAGACCCAACC  337

seq1  AGTGCAATCTCAGATGACTCCAGATCCAGTGAAATTGTCAAGCAAGCGGA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAATCTCAGATGACTCCAGATCCAGTGAAATTGTCAAGCAAGCGGA  387

seq1  ATTTTCACAAACCATCCTATTAGTCAAGGAATATTCTGCTTTACTGGAAA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACAAACCATCCTATTAGTCAAGGAATATTCTGCTTTACTGGAAA  437

seq1  AATCACACATGTATATGCAAAAAGTAATAATACTATTTTTATAATATTAA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACACATGTATATGCAAAAAGTAATAATACTATTTTTATAATATTAA  487

seq1  GGTGGTTTTACATCTGAAGTCATATCAATGTGTACAGGTGTTGCATAAGC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTTTACATCTGAAGTCATATCAATGTGTACAGGTGTTGCATAAGC  537

seq1  CTAAAGGAAACTATGCAATTTGTTCATTTGCTAGCAGATATGTGACTTAT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGAAACTATGCAATTTGTTCATTTGCTAGCAGATATGTGACTTAT  587

seq1  TCATATTTTAAAATATGCACAATGTGTTTATATGCATTTCTTTCTTTGAG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTTAAAATATGCACAATGTGTTTATATGCATTTCTTTCTTTGAG  637

seq1  TCAGAGACCCAGGTTTAATCACTATAAATTGGGAGGTTGGGGAGAAAAAG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGACCCAGGTTTAATCACTATAAATTGGGAGGTTGGGGAGAAAAAG  687

seq1  AGAGAGAACTAATACTGTGTATTCGTGGATAGTGAATCTCTAAGAACACA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAACTAATACTGTGTATTCGTGGATAGTGAATCTCTAAGAACACA  737

seq1  CGAAATACATTAAACAGAAAAAAAGTTGAAATTTTTCCTCTTGGTTTTAT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATACATTAAACAGAAAAAAAGTTGAAATTTTTCCTCTTGGTTTTAT  787

seq1  TCAAATAGATGGTTAGAAAAGATGATAAAATTATAGCAGTTTGAGAAGAG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAGATGGTTAGAAAAGATGATAAAATTATAGCAGTTTGAGAAGAG  837

seq1  AAGTACGAAATTGTGTAGAGGGCAGTGAAAATGAAAATCTGAAACTAATT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACGAAATTGTGTAGAGGGCAGTGAAAATGAAAATCTGAAACTAATT  887

seq1  CTAGTGCTAGGTAGGTTGAGGAAGGAGGATGATTTAAATCCACACTGAGT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGCTAGGTAGGTTGAGGAAGGAGGATGATTTAAATCCACACTGAGT  937

seq1  TTCATAGAAATACACCATCTCAATACGATGAGCAACAATATCAAAAACCG  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGAAATACACCATCTCAATACGATGAGCAACAATATCAAAAACCG  987

seq1  AGGCTGAAAGGTGGGCGTGTCCAAACTGTATAAGGTTATCCTGAAAACAA  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAAAGGTGGGCGTGTCCAAACTGTATAAGGTTATCCTGAAAACAA  1037

seq1  AAAGTTCTTTATATATTGAAATTCCCTGGCTTCACAGTCACCTACACATG  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCTTTATATATTGAAATTCCCTGGCTTCACAGTCACCTACACATG  1087

seq1  ATACAGATATAGCCTAAATCATTCCACACTCTCCTGCTCAAGAAATCAGT  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGATATAGCCTAAATCATTCCACACTCTCCTGCTCAAGAAATCAGT  1137

seq1  CATATAATCCTCAAAAGGATAAAGTAACAGACTTTGAAGTCAATATTTTA  1184
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAATCCTCAAAAGGATAAAGTAACAGACTTTGAAGTCAATATTTTA  1187

seq1  TTAATTCTTTATGAATTC  1202
      ||||||||||||||||||
seq2  TTAATTCTTTATGAATTC  1205


seq1: chr6_110942508_110943166
seq2: B6Ng01-326J01.g_64_722

seq1  GAATTCTCATGACCTAGTTTTTCAGGTCTCTTCATCGGGGCTCAACCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGACCTAGTTTTTCAGGTCTCTTCATCGGGGCTCAACCCTG  50

seq1  AGTGAGGCATCTGATTGAAATTTGATTCTTTTCCTGAAAATAGCTAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGCATCTGATTGAAATTTGATTCTTTTCCTGAAAATAGCTAACAT  100

seq1  TTCTCTGAAGCCAGTGAAAGCCATGCAGAAGTTCATGAGACTTGGGCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGAAGCCAGTGAAAGCCATGCAGAAGTTCATGAGACTTGGGCATA  150

seq1  GATTAGAAGAAGGATATGAGCCAGTGGCTTAAAGACACTTTGAAACAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGAAGAAGGATATGAGCCAGTGGCTTAAAGACACTTTGAAACAAGT  200

seq1  TTATTTGTATAAGAATGGATCCCTTCCTCCCCTGCATAGCATTTGTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTATAAGAATGGATCCCTTCCTCCCCTGCATAGCATTTGTGAAG  250

seq1  TGACAATGATCTGGAAAGGCTTAAAATCTGATGAGCTAAGGCTTTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATGATCTGGAAAGGCTTAAAATCTGATGAGCTAAGGCTTTTTTTT  300

seq1  TTTTTCTTTTCTCACACAGCATTAAGCATGCCTCAGGGAAGAAATAATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTCTCACACAGCATTAAGCATGCCTCAGGGAAGAAATAATGG  350

seq1  AGTGAACCACAGTTGCAAATGTGGGTGTAATTTTGAGAAGCAGCTATTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACCACAGTTGCAAATGTGGGTGTAATTTTGAGAAGCAGCTATTGC  400

seq1  ATTAAAAGCCTTTCCGTATATTTATGAATCTGGAGGTGGGGAGTGAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGCCTTTCCGTATATTTATGAATCTGGAGGTGGGGAGTGAATAG  450

seq1  TGACATAGGCTGTTCCCACCTCAATTGGACTGAGACAAACAGCAGTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAGGCTGTTCCCACCTCAATTGGACTGAGACAAACAGCAGTCACA  500

seq1  CCCACCCATCCATGCCCTTACACAAAGGAGCAATGAAAAGCTACCCATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCATCCATGCCCTTACACAAAGGAGCAATGAAAAGCTACCCATAC  550

seq1  AATAAGCTTTGAGTTGAATCTATGGTGAGTGTGTGTGTGTGTGTGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCTTTGAGTTGAATCTATGGTGAGTGTGTGTGTGTGTGTGTGTGT  600

seq1  GTGTGTGTGTGTGTGTGTGCGTGTGTGATGGTATAGAAATAAAAGACTTC  650
      ||||||||||||||||||||||||||||| |||||||||||   | ||||
seq2  GTGTGTGTGTGTGTGTGTGCGTGTGTGAT-GTATAGAAATATTTGTCTTC  649

seq1  TGTA-CAAGG  659
      |||| |||||
seq2  TGTATCAAGG  659


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