BAC Information

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BAC

Clone NameB6Ng01-326P20
Chromosome6 (Build37)
Map Location 119,191,808 - 119,344,543
singlet/doubletdoublet
Overlap geneCacna2d4, Lrtm2, Adipor2
Upstream gene1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26, Cacna1c, Dcp1b
Downstream geneWnt5b, Fbxl14, Erc1, LOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326P20.bB6Ng01-326P20.g
ACCGA114654GA114655
length1,1191,031
definitionB6Ng01-326P20.b B6Ng01-326P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,343,432 - 119,344,543)(119,191,808 - 119,192,830)
sequence
gaattccctgacttacagaggggtgtggtttattggatgcaaggcatata
cacctcaatgaagcctttttaagactgtgttgtttcattttgttttttag
attcttttaaaaactacatttatctttgtgtgtctgtctgtatgtgtgtg
agtgtgcttatgtggaggtcagaggccaacttgccagtttgttttttcct
tccatcccatcccttgagtcctggggattgggttcagcttgtcgggctta
ggggcaaataaatgcctttacccactagcccatctctctagttccgtttt
ttgagctttttctttgtttgtttgttttgagctttttttttttttttttt
aatttttaaacagggtctctctttgtagtcttggctgtttcggaactcac
tctgtggcctcaaactcacagagaactgcctgcctctgtctcccgagtgc
tgggattaaaggtgtgtgccaccatgcctggctattgagatttttaagac
aggtctcaatgtgtatctcaggtaagccttaaacttgataggtagacagg
ctggctttgaattccagaatttctacctaaaccctttcactctgaaatta
cagatgtatctgatgaataaagcttttcctttccttttggtgatagaaag
agaaggcagtttattaaaaaaaaaaaaaagtgtttacaaggtacttcaaa
gggtgaaagtgggataaggggaccaggagagatagatgctcagaagcagg
acaaggggaccaggaggatagatgctcagaagcgggacaaggggatcatg
gggatagatgctcagaagcgggacaaggggaccaggaggatagatgctca
gaaaccgggacaagggggaccaggaggatagatgctcagaagcgggacag
gggaccaggaggatagatgctccaaatcgggacaaggggaccaggaggat
agatgctcaaaaccgggaatcagggatcaggaggatagaatgctcagagc
tcggttttagccggccgtggtgatgcttccttgatcccatcactgggagg
caaagatcgagcagatcctgtgggaattccagggacagtcagggataaga
aacccttgttccacaaaaa
gaattcaaggcaagaatctggaggcagagactgaagcagacccctggagg
aaaacccgctttgtggggtttttcccttggttcactcagtttgctttctt
atgtaaccattcaccatctgcccacgggtggcactcttcacagtggactg
ggccctcccaccttccacagacttgcctccaggccaatcggatggaggca
tttttttcaacttagactgccctctgccaagatggcccaaacttgtgtca
agctgacggaaaactaggaggctctcagggagtatgagggctggagtcag
ggaggaacgtggctgggcctgagctcacagagctaacactgactagaggc
cagcaaggtggagcagggaggggtgttatggccacagttctagagggact
taaggtatgaggctcggagttgggggcagccaggggaaatggatctgatc
gtggtcccttgggtcacagccttcccgccctatgggaggaaacggaacat
ggcacaggtccacttgcagggcagagccccagaggctcctcaagccctct
ggctctccagcaccctcaccacctagaagaatcaaacagtgccagcaagg
tcctttgcatccttgtggctccctgagtctccatctgtctgtcagtcagt
ctgtctcagactaattttgctacatacactaaaccaagtggagaatcaaa
gcaatgattgggccaatctgaccccaaccagccaatgaaccttcagctcc
agttatcttgtcgtgcgcgttgtgaccacatatctctatccaccactggc
aacattaactgaagtgcaaggccattccccaccccacccttcacctcact
tccagttgcccttgaagctttccactcctttccctgggtccctcctcctt
ctctttttactctcggcctgactcccttccctcccctccccttctttgtc
tctgggcttgtcctcttctgggcctgttccccttttcgcccccagtttaa
ctactacaacttcggtactaatcaatgagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_119343432_119344543
seq2: B6Ng01-326P20.b_55_1173 (reverse)

seq1  TTTTTGTTTTGAGACAAGGG--TCTT-TCCCTGGCTGT-CCTGGAATTCC  46
      ||||||   ||  |||||||  |||| |||||| |||| |||||||||||
seq2  TTTTTG---TGGAACAAGGGTTTCTTATCCCTGACTGTCCCTGGAATTCC  47

seq1  CA-GGGATCTGCTCG-TCTCTGCCTCCCAGTGCTGGGATCAAAGAAGCAT  94
      ||  ||||||||||| ||| |||||||||||| ||||||||| |||||||
seq2  CACAGGATCTGCTCGATCTTTGCCTCCCAGTGATGGGATCAAGGAAGCAT  97

seq1  CACCACGCCCGGCTAAAACCGGCTTCTGAGCA-TCTATCCTCCTGGTCCC  143
      ||||||| |||||||||||||   |||||||| |||||||||||| ||||
seq2  CACCACGGCCGGCTAAAACCGAGCTCTGAGCATTCTATCCTCCTGATCCC  147

seq1  CTTGTCCCGCTTCTGAGCATCTATCCTCCTGGTCCCCTTGTCCCGCTTTT  193
          ||||| || |||||||||||||||||||||||||||||||| ||| 
seq2  TGATTCCCGGTTTTGAGCATCTATCCTCCTGGTCCCCTTGTCCCGATTTG  197

seq1  GAGCATCTATCCTCCTGGTCCCCTTGTCCCGCTTCTGAGCATCTATCCTC  243
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAGCATCTATCCTCCTGGTCCCC-TGTCCCGCTTCTGAGCATCTATCCTC  246

seq1  CTGGT-CCCCTTGTCCC-GCTTCTGAGCATCTATCCTCCTGGTCCCCTTG  291
      ||||| ||||||||||| | ||||||||||||||||||||||||||||||
seq2  CTGGTCCCCCTTGTCCCGGTTTCTGAGCATCTATCCTCCTGGTCCCCTTG  296

seq1  TCCCGCTTCTGAGCATCTATCCCCCTGATCCCCTTGTCCCGCTTCTGAGC  341
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCCCGCTTCTGAGCATCTATCCCCATGATCCCCTTGTCCCGCTTCTGAGC  346

seq1  ATCTATCCTCCTGGTCCCCTTGTCCTGCTTCTGAGCATCTATC-CTCCTG  390
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATCTATCCTCCTGGTCCCCTTGTCCTGCTTCTGAGCATCTATCTCTCCTG  396

seq1  GTCCCCTTATCCCACTTTCACCCTTTGAAGTACCTTGTAAACAC-TTTTT  439
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTCCCCTTATCCCACTTTCACCCTTTGAAGTACCTTGTAAACACTTTTTT  446

seq1  TTTTTTTTAATAAACTGCCTTCTCTTTCTATCACCAAAAGGAAAGGAAAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAATAAACTGCCTTCTCTTTCTATCACCAAAAGGAAAGGAAAA  496

seq1  GCTTTATTCATCAGATACATCTGTAATTTCAGAGTGAAAGGGTTTAGGTA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATTCATCAGATACATCTGTAATTTCAGAGTGAAAGGGTTTAGGTA  546

seq1  GAAATTCTGGAATTCAAAGCCAGCCTGTCTACCTATCAAGTTTAAGGCTT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTGGAATTCAAAGCCAGCCTGTCTACCTATCAAGTTTAAGGCTT  596

seq1  ACCTGAGATACACATTGAGACCTGTCTTAAAAATCTCAATAGCCAGGCAT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGATACACATTGAGACCTGTCTTAAAAATCTCAATAGCCAGGCAT  646

seq1  GGTGGCACACACCTTTAATCCCAGCACTCGGGAGACAGAGGCAGGCAGTT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCACACACCTTTAATCCCAGCACTCGGGAGACAGAGGCAGGCAGTT  696

seq1  CTCTGTGAGTTTGAGGCCACAGAGTGAGTTCCGAAACAGCCAAGACTACA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGAGTTTGAGGCCACAGAGTGAGTTCCGAAACAGCCAAGACTACA  746

seq1  AAGAGAGACCCTGTTTAAAAATTAAAAAAAAAAAAAAAAAAGCTCAAAAC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGACCCTGTTTAAAAATTAAAAAAAAAAAAAAAAAAGCTCAAAAC  796

seq1  AAACAAACAAAGAAAAAGCTCAAAAAACGGAACTAGAGAGATGGGCTAGT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAAGAAAAAGCTCAAAAAACGGAACTAGAGAGATGGGCTAGT  846

seq1  GGGTAAAGGCATTTATTTGCCCCTAAGCCCGACAAGCTGAACCCAATCCC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAAGGCATTTATTTGCCCCTAAGCCCGACAAGCTGAACCCAATCCC  896

seq1  CAGGACTCAAGGGATGGGATGGAAGGAAAAAACAAACTGGCAAGTTGGCC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTCAAGGGATGGGATGGAAGGAAAAAACAAACTGGCAAGTTGGCC  946

seq1  TCTGACCTCCACATAAGCACACTCACACACATACAGACAGACACACAAAG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTCCACATAAGCACACTCACACACATACAGACAGACACACAAAG  996

seq1  ATAAATGTAGTTTTTAAAAGAATCTAAAAAACAAAATGAAACAACACAGT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTAGTTTTTAAAAGAATCTAAAAAACAAAATGAAACAACACAGT  1046

seq1  CTTAAAAAGGCTTCATTGAGGTGTATATGCCTTGCATCCAATAAACCACA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAGGCTTCATTGAGGTGTATATGCCTTGCATCCAATAAACCACA  1096

seq1  CCCCTCTGTAAGTCAGGGAATTC  1112
      |||||||||||||||||||||||
seq2  CCCCTCTGTAAGTCAGGGAATTC  1119

seq1: chr6_119191808_119192830
seq2: B6Ng01-326P20.g_66_1096

seq1  GAATTCAAGGCAAGAATCTGGAGGCAGAGACTGAAGCAGACCCCTGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCAAGAATCTGGAGGCAGAGACTGAAGCAGACCCCTGGAGG  50

seq1  AAAACCCGCTTTGTGGGGTTTTTCCCTTGGTTCACTCAGTTTGCTTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCGCTTTGTGGGGTTTTTCCCTTGGTTCACTCAGTTTGCTTTCTT  100

seq1  ATGTAACCATTCACCATCTGCCCACGGGTGGCACTCTTCACAGTGGACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACCATTCACCATCTGCCCACGGGTGGCACTCTTCACAGTGGACTG  150

seq1  GGCCCTCCCACCTTCCACAGACTTGCCTCCAGGCCAATCGGATGGAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCCCACCTTCCACAGACTTGCCTCCAGGCCAATCGGATGGAGGCA  200

seq1  TTTTTTTCAACTTAGACTGCCCTCTGCCAAGATGGCCCAAACTTGTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCAACTTAGACTGCCCTCTGCCAAGATGGCCCAAACTTGTGTCA  250

seq1  AGCTGACGGAAAACTAGGAGGCTCTCAGGGAGTATGAGGGCTGGAGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACGGAAAACTAGGAGGCTCTCAGGGAGTATGAGGGCTGGAGTCAG  300

seq1  GGAGGAACGTGGCTGGGCCTGAGCTCACAGAGCTAACACTGACTAGAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAACGTGGCTGGGCCTGAGCTCACAGAGCTAACACTGACTAGAGGC  350

seq1  CAGCAAGGTGGAGCAGGGAGGGGTGTTATGGCCACAGTTCTAGAGGGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGGTGGAGCAGGGAGGGGTGTTATGGCCACAGTTCTAGAGGGACT  400

seq1  TAAGGTATGAGGCTCGGAGTTGGGGGCAGCCAGGGGAAATGGATCTGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTATGAGGCTCGGAGTTGGGGGCAGCCAGGGGAAATGGATCTGATC  450

seq1  GTGGTCCCTTGGGTCACAGCCTTCCCGCCCTATGGGAGGAAACGGAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCCCTTGGGTCACAGCCTTCCCGCCCTATGGGAGGAAACGGAACAT  500

seq1  GGCACAGGTCCACTTGCAGGGCAGAGCCCCAGAGGCTCCTCAAGCCCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGGTCCACTTGCAGGGCAGAGCCCCAGAGGCTCCTCAAGCCCTCT  550

seq1  GGCTCTCCAGCACCCTCACCACCTAGAAGAATCAAACAGTGCCAGCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCCAGCACCCTCACCACCTAGAAGAATCAAACAGTGCCAGCAAGG  600

seq1  TCCTTTGCATCCTTGTGGCTCCCTGAGTCTCCATCTGTCTGTCAGTCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGCATCCTTGTGGCTCCCTGAGTCTCCATCTGTCTGTCAGTCAGT  650

seq1  CTGTCTCAGACTAATTTTGCTACATACACTAAACCAAGTGGAGAATCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCAGACTAATTTTGCTACATACACTAAACCAAGTGGAGAATCAAA  700

seq1  GCAATGATTGGGCCAATCTGACCCCAACCAGCCAATGAACCTTCAGCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGATTGGGCCAATCTGACCCCAACCAGCCAATGAACCTTCAGCTCC  750

seq1  AGTTATCTTGTCGTGCGCGTTGTGACCACATATCTCTATCCACCACTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCTTGTCGTGCGCGTTGTGACCACATATCTCTATCCACCACTGGC  800

seq1  AACA-TAACTGAAGTGCAAGGCCATTCCCCACCCCACCCTTCACCTCACT  849
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAACTGAAGTGCAAGGCCATTCCCCACCCCACCCTTCACCTCACT  850

seq1  TCCAGTTGCCCTTGAAGC-TTCCACTCCTTTCCCTGGGTCCCTCCTCCCT  898
      |||||||||||||||||| ||||||||||||||||||||||||||| |||
seq2  TCCAGTTGCCCTTGAAGCTTTCCACTCCTTTCCCTGGGTCCCTCCT-CCT  899

seq1  TCTCTTTTTACTCTCGGCCTGACTCCCTT-CCTCCCCTCCCC-TCTTTGT  946
      ||||||||||||||||||||||||||||| |||||||||||| |||||||
seq2  TCTCTTTTTACTCTCGGCCTGACTCCCTTCCCTCCCCTCCCCTTCTTTGT  949

seq1  CTCTGGGC-TGT-CTCTTCTGGGCCTGTTCCCC-TTTCG-CCCCAGTTTA  992
      |||||||| ||| |||||||||||||||||||| ||||| ||||||||||
seq2  CTCTGGGCTTGTCCTCTTCTGGGCCTGTTCCCCTTTTCGCCCCCAGTTTA  999

seq1  ACTACTACAAC-TCGGTACTAATCAATGAGAA  1023
      ||||||||||| ||||||||||||||||||||
seq2  ACTACTACAACTTCGGTACTAATCAATGAGAA  1031