BAC Information

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BAC

Clone NameB6Ng01-327K16
Chromosome6 (Build37)
Map Location 12,888,431 - 13,016,047
singlet/doubletdoublet
Overlap geneLOC384350
Upstream genePhf14, LOC100040844, EG625347, LOC435879, Thsd7a, LOC667735
Downstream geneTmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik, LOC100041043
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327K16.bB6Ng01-327K16.g
ACCGA115152GA115153
length1,0931,133
definitionB6Ng01-327K16.b B6Ng01-327K16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,014,953 - 13,016,047)(12,888,431 - 12,889,562)
sequence
gaattcctgtgatagtttcccagatacatagcaaaagtattattccctgt
ggtcatttgccctacattcactgatagcaagttcttggttctgtgactac
acctttgtgtttcctctcttcaatatcctttgttacattctgcaaacatc
tcatccctttgagcctttggttcacatccctaagaaaccatttttagcat
aagaatcttctgtatatcctgacttacatcttcattgcttcaaacctaga
gaggcaaatttctctgtatgtattaagatgtttaaaccaataactaactt
tattgattttaaacttttacagagtctttgtcataataagttagtgaaaa
aatgttacaaaataggtcatgtttaataaatgaatgagtttgttgtgtca
tgcagtatatgaagtatttcagttcatctctttttaatttctatgggaag
tctttggattacattctattattatctgaattttattttaaacagagaaa
ctaaagacgggagagatcactcagtctgtaaagtgtttgttccataagta
tgaagaaactagttcaattcaccagaacacacattaaatatttaagccta
gaggttggtatttgtgatctcagctctggaaaacagagatgcaaggatca
gtggtgctcactggcaaattggtgaggtccagactcagtgagagatccta
tcttactatagctatggtagagaatgtttgaaaagaaaccctgtattgtc
ccaaatttccatacacacatccctgcatacttataaacatgcacacatca
gaagaaaaaaagaagatagaagattctaggttatgtaacttgtatatgaa
cacacagctatcaaattgtataactagaaatcagaaaagcacatgttatt
caccactgtggcatgaataatttttttaaacttggaatagcagatatttt
gtccaaataaagaattaaaatatattgttgagggctgagagtagcactac
aaaccatacgaatgaacacgatctcagtcagacaggatggtttattgatg
ccacaccctaatactgattagatcagaagtaacagctcagaaa

gaattcagggaaactaagtgaagcactttagagaatcattactccaaagg
aatcatgggagatggattatttagatgttagtagttgtgaatccaccttc
ccttttgaacactgtaactaagaggtctgatacccacttgttccctttcc
tagcacttcgaatcctttcttccccacactcttcctgctttccttttaaa
gagaaaagccatccttgaaaaacaaataccttgttattttgtcactgtgt
gttttcatagggtaagacatcatttctgacaagaagtggactgcacctat
taaatagtgacttggggcttctgctcttgagaatatcagttagttcccat
cattgaggaagagacacatatcaaacaaaagtactaatatttttgaaaag
caaatagaaactatcttcctatgtaaagacagaaaattccgaaaaatatg
atcaagacaaatggatggatggaatttcaaagtaaatgtctccactgctt
tcaataaccttcagaagtagcaactagacatctgtaaaaaggccacttga
gaggccttgttttgttgccttgtgctggaacatttatgttcaaatttaag
aacaaataacaactgcacacaaaaaagtttgtgcacattttcactatttc
ttaatttcagaatcagtctacaaagttagatgtaaatttcagtttaagaa
aaaatgtttgcatgttttcttcacttagagaaaatatagtcctgtgattg
gtggcatggttttagcgtgatgctgcagcagttatagccctcataaagaa
atcaaagctgtgtccttaaaggtatcaaaactagagcatcaaggcccctc
ccttgaacagaatgttaatgagtacatcccagtttatatattgccatatc
ccgtttcaaatgtttctgtggaaaataggaaatgtgattttcaaaagaaa
tgagaaataaatggagaacaaagtagtttgcactcatctccattaaagat
ttccctccactttaaaaacacagagacgcatcctcgtgtttagaaactta
acttcatgctaactggtggaatagcaagtcttatggggaggtggagaaag
tgcttagctgcaaatttatcagccattcactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_13014953_13016047
seq2: B6Ng01-327K16.b_46_1138 (reverse)

seq1  TTTCTGAGCTG-TACTTCTGATCTAATCAGTATTAGGGTGT-GCATACAA  48
      ||||||||||| ||||||||||||||||||||||||||||| |||| |||
seq2  TTTCTGAGCTGTTACTTCTGATCTAATCAGTATTAGGGTGTGGCAT-CAA  49

seq1  TAAACCATCCCTGTCTGACTGAGATCGGTGTTCATTCGTATGGTTTGTAG  98
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  TAAACCAT-CCTGTCTGACTGAGATC-GTGTTCATTCGTATGGTTTGTAG  97

seq1  TGCTACTCTCAGCCCTCAACAATATATTTTAATTCTTTATTTGGACAAAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTCTCAGCCCTCAACAATATATTTTAATTCTTTATTTGGACAAAA  147

seq1  TATCTGCTATTCCAAGTTTAAAAAAATTATTCATGCCACAGTGGTGAATA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCTATTCCAAGTTTAAAAAAATTATTCATGCCACAGTGGTGAATA  197

seq1  ACATGTGCTTTTCTGATTTCTAGTTATACAATTTGATAGCTGTGTGTTCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGCTTTTCTGATTTCTAGTTATACAATTTGATAGCTGTGTGTTCA  247

seq1  TATACAAGTTACATAACCTAGAATCTTCTATCTTCTTTTTTTCTTCTGAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAGTTACATAACCTAGAATCTTCTATCTTCTTTTTTTCTTCTGAT  297

seq1  GTGTGCATGTTTATAAGTATGCAGGGATGTGTGTATGGAAATTTGGGACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCATGTTTATAAGTATGCAGGGATGTGTGTATGGAAATTTGGGACA  347

seq1  ATACAGGGTTTCTTTTTCAAACATTCTCTACCATAGCTATAGTAAGATAG  398
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATACAGGGTTTC-TTTTCAAACATTCTCTACCATAGCTATAGTAAGATAG  396

seq1  GATCTCTCACTGAGTCTGGACCTCACCAATTTGCCAGTGAGCACCACTGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTCACTGAGTCTGGACCTCACCAATTTGCCAGTGAGCACCACTGA  446

seq1  TCCTTGCATCTCTGTTTTCCAGAGCTGAGATCACAAATACCAACCTCTAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCATCTCTGTTTTCCAGAGCTGAGATCACAAATACCAACCTCTAG  496

seq1  GCTTAAATATTTAATGTGTGTTCTGGTGAATTGAACTAGTTTCTTCATAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAATATTTAATGTGTGTTCTGGTGAATTGAACTAGTTTCTTCATAC  546

seq1  TTATGGAACAAACACTTTACAGACTGAGTGATCTCTCCCGTCTTTAGTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGAACAAACACTTTACAGACTGAGTGATCTCTCCCGTCTTTAGTTT  596

seq1  CTCTGTTTAAAATAAAATTCAGATAATAATAGAATGTAATCCAAAGACTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTTAAAATAAAATTCAGATAATAATAGAATGTAATCCAAAGACTT  646

seq1  CCCATAGAAATTAAAAAGAGATGAACTGAAATACTTCATATACTGCATGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGAAATTAAAAAGAGATGAACTGAAATACTTCATATACTGCATGA  696

seq1  CACAACAAACTCATTCATTTATTAAACATGACCTATTTTGTAACATTTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAAACTCATTCATTTATTAAACATGACCTATTTTGTAACATTTTT  746

seq1  TCACTAACTTATTATGACAAAGACTCTGTAAAAGTTTAAAATCAATAAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAACTTATTATGACAAAGACTCTGTAAAAGTTTAAAATCAATAAAG  796

seq1  TTAGTTATTGGTTTAAACATCTTAATACATACAGAGAAATTTGCCTCTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTATTGGTTTAAACATCTTAATACATACAGAGAAATTTGCCTCTCT  846

seq1  AGGTTTGAAGCAATGAAGATGTAAGTCAGGATATACAGAAGATTCTTATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGAAGCAATGAAGATGTAAGTCAGGATATACAGAAGATTCTTATG  896

seq1  CTAAAAATGGTTTCTTAGGGATGTGAACCAAAGGCTCAAAGGGATGAGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATGGTTTCTTAGGGATGTGAACCAAAGGCTCAAAGGGATGAGAT  946

seq1  GTTTGCAGAATGTAACAAAGGATATTGAAGAGAGGAAACACAAAGGTGTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAGAATGTAACAAAGGATATTGAAGAGAGGAAACACAAAGGTGTA  996

seq1  GTCACAGAACCAAGAACTTGCTATCAGTGAATGTAGGGCAAATGACCACA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGAACCAAGAACTTGCTATCAGTGAATGTAGGGCAAATGACCACA  1046

seq1  GGGAATAATACTTTTGCTATGTATCTGGGAAACTATCACAGGAATTC  1095
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATAATACTTTTGCTATGTATCTGGGAAACTATCACAGGAATTC  1093


seq1: chr6_12888431_12889562
seq2: B6Ng01-327K16.g_69_1201

seq1  GAATTCAGGGAAACTAAGTGAAGCACTTTAGAGAATCATTACTCCAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGAAACTAAGTGAAGCACTTTAGAGAATCATTACTCCAAAGG  50

seq1  AATCATGGGAGATGGATTATTTAGATGTTAGTAGTTGTGAATCCACCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGGGAGATGGATTATTTAGATGTTAGTAGTTGTGAATCCACCTTC  100

seq1  CCTTTTGAACACTGTAACTAAGAGGTCTGATACCCACTTGTTCCCTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGAACACTGTAACTAAGAGGTCTGATACCCACTTGTTCCCTTTCC  150

seq1  TAGCACTTCGAATCCTTTCTTCCCCACACTCTTCCTGCTTTCCTTTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTTCGAATCCTTTCTTCCCCACACTCTTCCTGCTTTCCTTTTAAA  200

seq1  GAGAAAAGCCATCCTTGAAAAACAAATACCTTGTTATTTTGTCACTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGCCATCCTTGAAAAACAAATACCTTGTTATTTTGTCACTGTGT  250

seq1  GTTTTCATAGGGTAAGACATCATTTCTGACAAGAAGTGGACTGCACCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATAGGGTAAGACATCATTTCTGACAAGAAGTGGACTGCACCTAT  300

seq1  TAAATAGTGACTTGGGGCTTCTGCTCTTGAGAATATCAGTTAGTTCCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGTGACTTGGGGCTTCTGCTCTTGAGAATATCAGTTAGTTCCCAT  350

seq1  CATTGAGGAAGAGACACATATCAAACAAAAGTACTAATATTTTTGAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGGAAGAGACACATATCAAACAAAAGTACTAATATTTTTGAAAAG  400

seq1  CAAATAGAAACTATCTTCCTATGTAAAGACAGAAAATTCCGAAAAATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGAAACTATCTTCCTATGTAAAGACAGAAAATTCCGAAAAATATG  450

seq1  ATCAAGACAAATGGATGGATGGAATTTCAAAGTAAATGTCTCCACTGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGACAAATGGATGGATGGAATTTCAAAGTAAATGTCTCCACTGCTT  500

seq1  TCAATAACCTTCAGAAGTAGCAACTAGACATCTGTAAAAAGGCCACTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAACCTTCAGAAGTAGCAACTAGACATCTGTAAAAAGGCCACTTGA  550

seq1  GAGGCCTTGTTTTGTTGCCTTGTGCTGGAACATTTATGTTCAAATTTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTTGTTTTGTTGCCTTGTGCTGGAACATTTATGTTCAAATTTAAG  600

seq1  AACAAATAACAACTGCACACAAAAAAGTTTGTGCACATTTTCACTATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATAACAACTGCACACAAAAAAGTTTGTGCACATTTTCACTATTTC  650

seq1  TTAATTTCAGAATCAGTCTACAAAGTTAGATGTAAATTTCAGTTTAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCAGAATCAGTCTACAAAGTTAGATGTAAATTTCAGTTTAAGAA  700

seq1  AAAATGTTTGCATGTTTTCTTCACTTAGAGAAAATATAGTCCTGTGATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTTGCATGTTTTCTTCACTTAGAGAAAATATAGTCCTGTGATTG  750

seq1  GTGGCATGGTTTTAGCGTGATGCTGCAGCAGTTATAGCCCTCATAAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATGGTTTTAGCGTGATGCTGCAGCAGTTATAGCCCTCATAAAGAA  800

seq1  ATCAAAGCTGTGTCCTTAAAGGTATCAAAACTAGAGCATCAAGGCCCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGCTGTGTCCTTAAAGGTATCAAAACTAGAGCATCAAGGCCCCTC  850

seq1  CCTTGAACAGAATGTTAATGAGTACATCCCAGTTTATATATTGCCATATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACAGAATGTTAATGAGTACATCCCAGTTTATATATTGCCATATC  900

seq1  CCGTTTCAAATGTTTCTGTGGAAAATAGGAATTGTGATTTTCAAAAGAAA  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCGTTTCAAATGTTTCTGTGGAAAATAGGAAATGTGATTTTCAAAAGAAA  950

seq1  TGAGAAATAAATGGAGAACAAAGTAGTTTGCACTCATCTCCATTAAAGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATAAATGGAGAACAAAGTAGTTTGCACTCATCTCCATTAAAGAT  1000

seq1  TTCCCT-CACTTT-AAAACACAGAGACGGCATCCTCGTGTTTAGAAACTT  1048
      |||||| |||||| ||||||||||||| ||||||||||||||||||||||
seq2  TTCCCTCCACTTTAAAAACACAGAGAC-GCATCCTCGTGTTTAGAAACTT  1049

seq1  AACTTTCATGCTAACT-GTGG-ATAGCAAGGTCTATTGGGAG--TGAGAA  1094
      ||| |||||||||||| |||| ||||||||   ||| |||||   |||||
seq2  AAC-TTCATGCTAACTGGTGGAATAGCAAGTCTTATGGGGAGGTGGAGAA  1098

seq1  AGTGCTTTAGGCTGCAAATTTATCCAGCCATTCACTGA  1132
      |||||||   ||||||||||||| ||||||||||||||
seq2  AGTGCTT--AGCTGCAAATTTAT-CAGCCATTCACTGA  1133


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