BAC Information

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BAC

Clone NameB6Ng01-328G01
Chromosome6 (Build37)
Map Location 47,325,591 - 47,450,904
singlet/doubletdoublet
Overlap geneA930035D04Rik, Cul1
Upstream geneCntnap2, Rbpsuh-rs3, LOC622745, LOC100041064, LOC100041078
Downstream geneEzh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328G01.bB6Ng01-328G01.g
ACCGA115661GA115662
length1,1661,012
definitionB6Ng01-328G01.b B6Ng01-328G01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,449,726 - 47,450,904)(47,325,591 - 47,326,406)
sequence
gaattccctggatccaatcagttttgaccagaaacacctgctaaaactaa
ttctagttactctcagtttcctaacatatcaagatacattttagaaatta
taaaaatcttccaatcttgattgtgcattttaaatgcagtttcttgtaca
taaattaagaacacccactgtcctttgtgtcttcaggagactatgtgtga
aacgcacatttgtgtgtacatggtacatgctcacatgagcatgtgaagat
gcacaaacaggtggctggagacaaggtgagaacttcctgtgtctatcact
ctccaccctattcccttgagacaaactctctcactgagagaccagcagca
gtaagctcaagctcatggcttttatataggtgctaggtatctgaactcaa
gcattcttactaagctatcttccccagcccgggagatgcattttcactcg
aatgtataattatcatgctctcgtttccatttctaaacttctttcaagtg
ttatactgattaattactgtaaaaatgatctctgaaagaaaaaagttaga
atttatgtatgatttttagacgtctgttgggagaggtattagaaagttaa
ataaaacacaattgaaatttacggcactttaacacataaactgtcaagaa
attaaacataaatgtcttagtcttattttacttcctctccaatctcctct
ccaactagaaataaaattaagcttgtaaaaaatatgcaaatttagtctat
ggaaagtgttttccaagtagtgtctccaataaaataaatactataaaaat
caatatttaaggcattttttgggtctgtttttccctctgtagttctgaca
tttgtatcagcttaaaaaccagcatagattcactgagatctacctgcttc
tgtatccaagagctggggttaaaggggtgcagcactaggcccagcattat
taagactcttgctttgtggtgtgcaaaggtactgacgactcaacctcact
gtctagagaaaagcaaactttctccctgcctcttcagcttcaaaactgga
gtaagcagcagtgaaacatcagctatagtatcagcttctaacagaatccc
tacttcaaaaattattttgttgtactacttcttaatagcaccccactttg
atgacctaggctgact
gaattctccaccttcacctggtctccataggcactccacacacagtgcac
aggcacaaacacagacaaaacaccacacatgtaaagcaaatatttctttt
taagctggatattgtcagatttaaaggaaactccaattccccaaattcca
aaaggcagtccaaatatctagaaataagttcaacctggactacaggagga
tttctggcagtaaggtaaaagccagcattcctcaggaacttgtaaaacca
gctcccatctgccaaaggcaattatttcccttacctctgggacataagac
ttcctatgacacctatcatcaaagtgaatgccggcttgcaggctcctctc
tgtatcacatactacacgtttcaaagtccacgctggcatcccagcccttc
tcaccctctcttctaccctaaactccctccagctcacaggcttctagtga
tctggctattctcacttgtggaaagccttttcgggtactgcttggcagga
gtctgacattggccaaggacaaggaaatgggtttcaggaaggaatctgac
attggaagtaaactcaggcaggaatctgacattagggcgtaataaggaag
taagtttcaggcagcaagaatctaactttaggctgtaataaggaagtagg
gtaaggcaggaattttagtcttagggtggaacagaagaacaaggcttcag
gcaagattttgggcttggacacggaagtgggctcaagtatttcggtcctt
atgacaaactcttttaaacaagtgtcatggaagtaatcatgggacttcac
ttactgctttattagctccttatggtactgcttgcccaaaaatacttgca
tgtaattaaaatgatataaaaagtggattggaaaattaaatttgccttca
gtctcagaattgactggggtcatgctaccatgttgtctaactgtcttttc
tctttttagtcctcactcccgcgctggagaactgttgactgactgagcgg
acttggtcactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_47449726_47450904
seq2: B6Ng01-328G01.b_45_1210 (reverse)

seq1  AGTCAGCCTAGGTCCATCCAAAGGTGGGGTTGCTAATTTAGAAAGTAGGT  50
      ||||||||||||| ||||  || |||||| |||||  |||  ||||| ||
seq2  AGTCAGCCTAGGT-CATC--AAAGTGGGG-TGCTA--TTAAGAAGTA-GT  43

seq1  ACAACAAAATAATTTTTTAAAGTAGGGATTCTGTTAGAAGCTGATACTAT  100
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  ACAACAAAATAA-TTTTTGAAGTAGGGATTCTGTTAGAAGCTGATACTAT  92

seq1  AGCCTGATGTTTTCACTGCTGCCTTACTCCAGTTTTGAGGGCTGAAGAGG  150
      || |||||| ||||||||||| ||||||||||||||||  ||||||||||
seq2  AG-CTGATG-TTTCACTGCTG-CTTACTCCAGTTTTGA-AGCTGAAGAGG  138

seq1  CAGGGAGGAAAGTTTGCTTTTCTCTAGACAGTGAGGTTGAGTCGTCAGTA  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGA-GAAAGTTTGCTTTTCTCTAGACAGTGAGGTTGAGTCGTCAGTA  187

seq1  CCTTTGCACACCACAAAGCAAGAGTCTTAATAATGCTGGGCCTAGTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCACACCACAAAGCAAGAGTCTTAATAATGCTGGGCCTAGTGCTG  237

seq1  CACCCCTTTAACCCCAGCTCTTGGATACAGAAGCAGGTAGATCTCAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTTTAACCCCAGCTCTTGGATACAGAAGCAGGTAGATCTCAGTGA  287

seq1  ATCTATGCTGGTTTTTAAGCTGATACAAATGTCAGAACTACAGAGGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGCTGGTTTTTAAGCTGATACAAATGTCAGAACTACAGAGGGAAA  337

seq1  AACAGACCCAAAAAATGCCTTAAATATTGATTTTTATAGTATTTATTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACCCAAAAAATGCCTTAAATATTGATTTTTATAGTATTTATTTTA  387

seq1  TTGGAGACACTACTTGGAAAACACTTTCCATAGACTAAATTTGCATATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGACACTACTTGGAAAACACTTTCCATAGACTAAATTTGCATATTT  437

seq1  TTTACAAGCTTAATTTTATTTCTAGTTGGAGAGGAGATTGGAGAGGAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAGCTTAATTTTATTTCTAGTTGGAGAGGAGATTGGAGAGGAAGT  487

seq1  AAAATAAGACTAAGACATTTATGTTTAATTTCTTGACAGTTTATGTGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGACTAAGACATTTATGTTTAATTTCTTGACAGTTTATGTGTTA  537

seq1  AAGTGCCGTAAATTTCAATTGTGTTTTATTTAACTTTCTAATACCTCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCGTAAATTTCAATTGTGTTTTATTTAACTTTCTAATACCTCTCC  587

seq1  CAACAGACGTCTAAAAATCATACATAAATTCTAACTTTTTTCTTTCAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGACGTCTAAAAATCATACATAAATTCTAACTTTTTTCTTTCAGAG  637

seq1  ATCATTTTTACAGTAATTAATCAGTATAACACTTGAAAGAAGTTTAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTTACAGTAATTAATCAGTATAACACTTGAAAGAAGTTTAGAAA  687

seq1  TGGAAACGAGAGCATGATAATTATACATTCGAGTGAAAATGCATCTCCCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACGAGAGCATGATAATTATACATTCGAGTGAAAATGCATCTCCCG  737

seq1  GGCTGGGGAAGATAGCTTAGTAAGAATGCTTGAGTTCAGATACCTAGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGGAAGATAGCTTAGTAAGAATGCTTGAGTTCAGATACCTAGCAC  787

seq1  CTATATAAAAGCCATGAGCTTGAGCTTACTGCTGCTGGTCTCTCAGTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAAAAGCCATGAGCTTGAGCTTACTGCTGCTGGTCTCTCAGTGAG  837

seq1  AGAGTTTGTCTCAAGGGAATAGGGTGGAGAGTGATAGACACAGGAAGTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTGTCTCAAGGGAATAGGGTGGAGAGTGATAGACACAGGAAGTTC  887

seq1  TCACCTTGTCTCCAGCCACCTGTTTGTGCATCTTCACATGCTCATGTGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTGTCTCCAGCCACCTGTTTGTGCATCTTCACATGCTCATGTGAG  937

seq1  CATGTACCATGTACACACAAATGTGCGTTTCACACATAGTCTCCTGAAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACCATGTACACACAAATGTGCGTTTCACACATAGTCTCCTGAAGA  987

seq1  CACAAAGGACAGTGGGTGTTCTTAATTTATGTACAAGAAACTGCATTTAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGGACAGTGGGTGTTCTTAATTTATGTACAAGAAACTGCATTTAA  1037

seq1  AATGCACAATCAAGATTGGAAGATTTTTATAATTTCTAAAATGTATCTTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACAATCAAGATTGGAAGATTTTTATAATTTCTAAAATGTATCTTG  1087

seq1  ATATGTTAGGAAACTGAGAGTAACTAGAATTAGTTTTAGCAGGTGTTTCT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTAGGAAACTGAGAGTAACTAGAATTAGTTTTAGCAGGTGTTTCT  1137

seq1  GGTCAAAACTGATTGGATCCAGGGAATTC  1179
      |||||||||||||||||||||||||||||
seq2  GGTCAAAACTGATTGGATCCAGGGAATTC  1166

seq1: chr6_47325591_47326406
seq2: B6Ng01-328G01.g_67_882

seq1  GAATTCTCCACCTTCACCTGGTCTCCATAGGCACTCCACACACAGTGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCACCTTCACCTGGTCTCCATAGGCACTCCACACACAGTGCAC  50

seq1  AGGCACAAACACAGACAAAACACCACACATGTAAAGCAAATATTTCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAAACACAGACAAAACACCACACATGTAAAGCAAATATTTCTTTT  100

seq1  TAAGCTGGATATTGTCAGATTTAAAGGAAACTCCAATTCCCCAAATTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGGATATTGTCAGATTTAAAGGAAACTCCAATTCCCCAAATTCCA  150

seq1  AAAGGCAGTCCAAATATCTAGAAATAAGTTCAACCTGGACTACAGGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAGTCCAAATATCTAGAAATAAGTTCAACCTGGACTACAGGAGGA  200

seq1  TTTCTGGCAGTAAGGTAAAAGCCAGCATTCCTCAGGAACTTGTAAAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGCAGTAAGGTAAAAGCCAGCATTCCTCAGGAACTTGTAAAACCA  250

seq1  GCTCCCATCTGCCAAAGGCAATTATTTCCCTTACCTCTGGGACATAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCATCTGCCAAAGGCAATTATTTCCCTTACCTCTGGGACATAAGAC  300

seq1  TTCCTATGACACCTATCATCAAAGTGAATGCCGGCTTGCAGGCTCCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATGACACCTATCATCAAAGTGAATGCCGGCTTGCAGGCTCCTCTC  350

seq1  TGTATCACATACTACACGTTTCAAAGTCCACGCTGGCATCCCAGCCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCACATACTACACGTTTCAAAGTCCACGCTGGCATCCCAGCCCTTC  400

seq1  TCACCCTCTCTTCTACCCTAAACTCCCTCCAGCTCACAGGCTTCTAGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTCTCTTCTACCCTAAACTCCCTCCAGCTCACAGGCTTCTAGTGA  450

seq1  TCTGGCTATTCTCACTTGTGGAAAGCCTTTTCGGGTACTGCTTGGCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTATTCTCACTTGTGGAAAGCCTTTTCGGGTACTGCTTGGCAGGA  500

seq1  GTCTGACATTGGCCAAGGACAAGGAAATGGGTTTCAGGAAGGAATCTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACATTGGCCAAGGACAAGGAAATGGGTTTCAGGAAGGAATCTGAC  550

seq1  ATTGGAAGTAAACTCAGGCAGGAATCTGACATTAGGGCGTAATAAGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAGTAAACTCAGGCAGGAATCTGACATTAGGGCGTAATAAGGAAG  600

seq1  TAAGTTTCAGGCAGCAAGAATCTAACTTTAGGCTGTAATAAGGAAGTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTCAGGCAGCAAGAATCTAACTTTAGGCTGTAATAAGGAAGTAGG  650

seq1  GTAAGGCAGGAATTTTAGTCTTAGGGTGGAACAGAAGAACAAGGCTTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGCAGGAATTTTAGTCTTAGGGTGGAACAGAAGAACAAGGCTTCAG  700

seq1  GCAAGATTTTGGGCTTGGACACGGAAGTGGGCTCAAGTATTTCGGTCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATTTTGGGCTTGGACACGGAAGTGGGCTCAAGTATTTCGGTCCTT  750

seq1  ATGACAAACTCTTTTAAACAAGTGTCATGGAAGTAATCATGGGACTTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAACTCTTTTAAACAAGTGTCATGGAAGTAATCATGGGACTTCAC  800

seq1  TTACTGCTTTATTAGC  816
      ||||||||||||||||
seq2  TTACTGCTTTATTAGC  816