BAC Information

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BAC

Clone NameB6Ng01-328H12
Chromosome6 (Build37)
Map Location 13,687,766 - 13,866,727
singlet/doubletdoublet
Overlap geneGpr85, 2610001J05Rik
Upstream geneThsd7a, LOC667735, LOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik
Downstream geneLOC100041043, LOC100040513, LOC667797, Ppp1r3a, Foxp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328H12.bB6Ng01-328H12.g
ACCGA115724GA115725
length1,1631,208
definitionB6Ng01-328H12.b B6Ng01-328H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,687,766 - 13,688,926)(13,865,529 - 13,866,727)
sequence
gaattcacagtgctctaggtacaattcctagtaaaacacacgcacacaca
cacacacacacacacacacacacacacacacacacagagacagagacaga
aagaaggagagagggaaagactagatgaaaccatttttgagatgacaaag
gctattttgtgtacagttacaaaaaaaacttggcaaggaaactatgacag
atatataaaaattaagtaaattataaaaaacacatttaaattatctagaa
tacaagaagactaaatataacttcttggtgacgttttaaataatataata
aaggaaaatatttgaaatagctttttagtaaaataatagttttacttgat
ttttaaaaatgatagttctctgttatggacgtttgatgggatttttctca
gttgtttgactataaaagtgcttcagtgtaagaagtggtacctgtacttt
tttttttttttttttttttttttttttgtgactgtgcacgtccacagtga
aaaggccaagccgggacttacagtattcaagggaggatggccaggaaatg
aaacaaatgaatccagatgtagcaggagtggctcaaaggaagtggaccgt
gggccaggtttgttcatttatttttctgatggtctcagtaaacattgaca
atggaaagtcatttacaaacactggtgttatcattaaaagagagcggcca
tgcatcattatctgttttgctcatgttggtaatggacacacagaccaggc
cttttacagcaaaagtcttattgcaaagggtgggatcagtatcaatcagt
tcaagtcagctgggcagggctgaaggtttgtgtgttttaaattttgcttc
gtttaaatcagtggagccacattactgagagagcatctcgctgtgtcgct
caggcttggcctcaaggctcttattcttcctgcctcagccttcccctgtg
ctgaagattccaggtgcctgccactaaattattttttcctaaatagggat
taatcacttgagattaaaggagtttaaagatcttatttattaatggcagt
acttatggcaactacatttagtattctggaactatataaatatgaaaatt
gacaaaatatattgtccaaatatgtctcaatgaaaaaacatctttatttg
tatacaggtcaaa

gaattcaatctgaagtaagagtagaaaagcaaagtaggtaacttgagttc
tttccttctaggaaaaaaatctggagtcagaggatgacttggtcagtaca
ctgtttgctggacaaacttaaggacctgagctcatattccagaatccctg
taaaaagataaagtacaaaggtatgtagatcaccgaaattcatgaaccag
ccagcctaaatacatcaatgagctccaagtcccatatatgcctttatctc
aaacaaaattaatggagataatgacacacagtgtcaacttttgtcttctg
ggtgtgtgtgctcacacttgtacatccactgtcacacactatggtgattt
gaacaggagtatcaatatttcaacatatgttcatatatttgaaagttttg
tcattaggtgtagccttgctgggggaagtgtgtcactggaatgaggccgg
ggagtgcttcatggttcaagaagcacaagccgggtccagtggtctctatc
acttcctgctgcttgtggatctatatgtagaactctctactcttcatgaa
gaacatagctgcctgcatgctgccatgcttcctgtaaggctgatgatgga
ctaatcccctgtaactataagcaagtcccacttgaatgcttttctttgta
agagttaccttggtcatggtgtctcttcccagtcatagaacactgactaa
gatacacacaaacataaaatgtatacttgcacacccacagagcaaacaag
cagagcaactgaacatattaaagagcctctgattagcaagttgtgtgata
aggcttatgttttagtcttttatgtattaatgtcactattgactgatttg
ttttagcaatattatctcttttaaaagttttgaagacacacagactttta
catgtttatcattaatctaaatctagtatggaacctttttccctccctgt
actcaggtgtcttgcccattgctttcgtttgagtagaaaagtaacttctc
ttgatgttgtcttgggaagacacaaatctactcatatctctgaattataa
cattatctttgggatcacgctaaatttagaaggaatatttctcaattata
ttgttaacaatcagaattcctctttggccatgaaatatttttacctttac
tttacttgaaaatctcaaccacaattattctagggatccatatttcaaga
aaagttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_13687766_13688926
seq2: B6Ng01-328H12.b_47_1209

seq1  GAATTCACAGTGCTCTAGGTACAATTCCTAGTAAAACACACGCACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTGCTCTAGGTACAATTCCTAGTAAAACACACGCACACACA  50

seq1  CACACACACACACACACACACACACACACACACACAGAGACAGAGACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACAGAGACAGAGACAGA  100

seq1  AAGAAGGAGAGAGGGAAAGACTAGATGAAACCATTTTTGAGATGACAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGAGAGAGGGAAAGACTAGATGAAACCATTTTTGAGATGACAAAG  150

seq1  GCTATTTTGTGTACAGTTACAAAAAAAACTTGGCAAGGAAACTATGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTTGTGTACAGTTACAAAAAAAACTTGGCAAGGAAACTATGACAG  200

seq1  ATATATAAAAATTAAGTAAATTATAAAAAACACATTTAAATTATCTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAAAAATTAAGTAAATTATAAAAAACACATTTAAATTATCTAGAA  250

seq1  TACAAGAAGACTAAATATAACTTCTTGGTGACGTTTTAAATAATATAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAAGACTAAATATAACTTCTTGGTGACGTTTTAAATAATATAATA  300

seq1  AAGGAAAATATTTGAAATAGCTTTTTAGTAAAATAATAGTTTTACTTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAATATTTGAAATAGCTTTTTAGTAAAATAATAGTTTTACTTGAT  350

seq1  TTTTAAAAATGATAGTTCTCTGTTATGGACGTTTGATGGGATTTTTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAATGATAGTTCTCTGTTATGGACGTTTGATGGGATTTTTCTCA  400

seq1  GTTGTTTGACTATAAAAGTGCTTCAGTGTAAGAAGTGGTACCTGTACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTGACTATAAAAGTGCTTCAGTGTAAGAAGTGGTACCTGTACTTT  450

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTTGTGACTGTGCACGTCCACAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTTTTTTGTGACTGTGCACGTCCACAGTGA  500

seq1  AAAGGCCAAGCCGGGACTTACAGTATTCAAGGCAGGATGGCCAGGAGATG  550
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  AAAGGCCAAGCCGGGACTTACAGTATTCAAGGGAGGATGGCCAGGAAATG  550

seq1  AAACAAATGAATCCAGATGTAGCAGGAGTGGCTCAAAGGAAGTGGACCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATGAATCCAGATGTAGCAGGAGTGGCTCAAAGGAAGTGGACCGT  600

seq1  GGGCCAGGTTTGTTCATTTATTTTTCTGATGGTCTCAGTAAACATTGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGGTTTGTTCATTTATTTTTCTGATGGTCTCAGTAAACATTGACA  650

seq1  ATGGAAAGTCATTTACAAACACTGGTGTTATCATTAAAAGAGAGCGGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGTCATTTACAAACACTGGTGTTATCATTAAAAGAGAGCGGCCA  700

seq1  TGCATCATTATCTGTTTTGCTCATGTTGGTAATGGACACACAGACCAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCATTATCTGTTTTGCTCATGTTGGTAATGGACACACAGACCAGGC  750

seq1  CTTTTACAGCAAAAGTCTTATTGCAAAGGTTGGGATCAGTATCAATCAGT  800
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTTTTACAGCAAAAGTCTTATTGCAAAGGGTGGGATCAGTATCAATCAGT  800

seq1  TCAGGTCAGCTGGGCAGGGCTGATGGTTTGTGTGTTTTAAATTTTGCTTC  850
      ||| ||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCAAGTCAGCTGGGCAGGGCTGAAGGTTTGTGTGTTTTAAATTTTGCTTC  850

seq1  GTTTAAATCAGT-GAGCCACATTACTGAGAGAGCATCTCGCTGTGTCGCT  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTTTAAATCAGTGGAGCCACATTACTGAGAGAGCATCTCGCTGTGTCGCT  900

seq1  CAGGC-TGGCCTC-AGGCTCTTATTCTTCCTGCCTCAG-CTTCCCCTGTG  946
      ||||| ||||||| |||||||||||||||||||||||| |||||||||||
seq2  CAGGCTTGGCCTCAAGGCTCTTATTCTTCCTGCCTCAGCCTTCCCCTGTG  950

seq1  CTG-AGATTCCAGGTGCCTGCCACTAAATTA-TTTTTCTTAAATAGGATT  994
      ||| ||||||||||||||||||||||||||| |||||| ||||||||  |
seq2  CTGAAGATTCCAGGTGCCTGCCACTAAATTATTTTTTCCTAAATAGGGAT  1000

seq1  TAATCACTTGAGATTTAAAGGAGTTTTAAAGATCTTATTAATTAAT-GCA  1043
      ||||||||||||| ||||||||| ||||||||||||||| |||||| |||
seq2  TAATCACTTGAGA-TTAAAGGAG-TTTAAAGATCTTATTTATTAATGGCA  1048

seq1  GTACTTATTGGCAACTACAATTTAGTAATTCTGAACATATATAAATATGA  1093
      ||||||| |||||||||| ||||||| |||||| |  |||||||||||| 
seq2  GTACTTA-TGGCAACTAC-ATTTAGT-ATTCTGGAACTATATAAATATG-  1094

seq1  AAAATTGACAAAATATATTGTCC-AATATGTCTCAATGAAAAAACAATCT  1142
      ||||||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  AAAATTGACAAAATATATTGTCCAAATATGTCTCAATGAAAAAAC-ATCT  1143

seq1  TTATTTGTATACA-GTCAAA  1161
      ||||||||||||| ||||||
seq2  TTATTTGTATACAGGTCAAA  1163


seq1: chr6_13865529_13866727
seq2: B6Ng01-328H12.g_66_1273 (reverse)

seq1  ATAAC-TTTCTTGAAATATGGAT-CCTAG-ATATATGTGGTTGAGTATTT  47
      ||||| ||||||||||||||||| ||||| |||  ||||||||||   ||
seq2  ATAACTTTTCTTGAAATATGGATCCCTAGAATAATTGTGGTTGAG--ATT  48

seq1  TTAAAGTAAAGTAAA-GTAAAAATATTTCATTGGCCAAGA-GAATCTTGA  95
      || |||||||||||| ||||||||||||||| | | |||| ||||  |||
seq2  TTCAAGTAAAGTAAAGGTAAAAATATTTCATGGCCAAAGAGGAATTCTGA  98

seq1  TTGTTAACAATATAATTGAG-AATATTCCCCTTCTAAA-TTAGCGTGGAT  143
      |||||||||||||||||||| ||||||  ||||||||| ||||||| |||
seq2  TTGTTAACAATATAATTGAGAAATATT--CCTTCTAAATTTAGCGT-GAT  145

seq1  CCCAAAGATAATGTTATAATTCAGAGATATGAGTAGATTTGTGGTCTCCC  193
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  CCCAAAGATAATGTTATAATTCAGAGATATGAGTAGATTTGTGTCTTCCC  195

seq1  -AGAC-ACATCAAGAAGAGTTACTTTTCTACTCAAACG-AAGCAATGGGC  240
       |||| |||||||||  ||||||||||||||||||||| |||||||||||
seq2  AAGACAACATCAAGAGAAGTTACTTTTCTACTCAAACGAAAGCAATGGGC  245

seq1  -AGACACCTGAGTACAGGGAGGG-AAAAGGTTCCATACTAGATTTAGATT  288
       |||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGACACCTGAGTACAGGGAGGGAAAAAGGTTCCATACTAGATTTAGATT  295

seq1  AATGATAAACATGT-AAAGTCTGTGTGTCTTCAAAACTTTT-AAAGAGAT  336
      |||||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  AATGATAAACATGTAAAAGTCTGTGTGTCTTCAAAACTTTTAAAAGAGAT  345

seq1  AATATTGCTAAAACAAATTCAGTCAATAGTGACATTAATACATAAAAGAC  386
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATATTGCTAAAACAAA-TCAGTCAATAGTGACATTAATACATAAAAGAC  394

seq1  T-AAACATAAGCCTTATCACACAACTTGCTAATCAGAGGCTCTTTAATAT  435
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATAAGCCTTATCACACAACTTGCTAATCAGAGGCTCTTTAATAT  444

seq1  GTTCAGTTGCTCTGCTTGTTTGCTCTGTGGGTGTGCAAGTATACATTTTA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTTGCTCTGCTTGTTTGCTCTGTGGGTGTGCAAGTATACATTTTA  494

seq1  TGTTTGTGTGTATCTTAGTCAGTGTTCTATGACTGGGAAGAGACACCATG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGTGTATCTTAGTCAGTGTTCTATGACTGGGAAGAGACACCATG  544

seq1  ACCAAGGTAACTCTTACAAAGAAAAGCATTCAAGTGGGACTTGCTTATAG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGTAACTCTTACAAAGAAAAGCATTCAAGTGGGACTTGCTTATAG  594

seq1  TTACAGGGGATTAGTCCATCATCAGCCTTACAGGAAGCATGGCAGCATGC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGGGATTAGTCCATCATCAGCCTTACAGGAAGCATGGCAGCATGC  644

seq1  AGGCAGCTATGTTCTTCATGAAGAGTAGAGAGTTCTACATATAGATCCAC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCTATGTTCTTCATGAAGAGTAGAGAGTTCTACATATAGATCCAC  694

seq1  AAGCAGCAGGAAGTGATAGAGACCACTGGACCCGGCTTGTGCTTCTTGAA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCAGGAAGTGATAGAGACCACTGGACCCGGCTTGTGCTTCTTGAA  744

seq1  CCATGAAGCACTCCCCGGCCTCATTCCAGTGACACACTTCCCCCAGCAAG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAGCACTCCCCGGCCTCATTCCAGTGACACACTTCCCCCAGCAAG  794

seq1  GCTACACCTAATGACAAAACTTTCAAATATATGAACATATGTTGAAATAT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACCTAATGACAAAACTTTCAAATATATGAACATATGTTGAAATAT  844

seq1  TGATACTCCTGTTCAAATCACCATAGTGTGTGACAGTGGATGTACAAGTG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTCCTGTTCAAATCACCATAGTGTGTGACAGTGGATGTACAAGTG  894

seq1  TGAGCACACACACCCAGAAGACAAAAGTTGACACTGTGTGTCATTATCTC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACACACACCCAGAAGACAAAAGTTGACACTGTGTGTCATTATCTC  944

seq1  CATTAATTTTGTTTGAGATAAAGGCATATATGGGACTTGGAGCTCATTGA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATTTTGTTTGAGATAAAGGCATATATGGGACTTGGAGCTCATTGA  994

seq1  TGTATTTAGGCTGGCTGGTTCATGAATTTCGGTGATCTACATACCTTTGT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTAGGCTGGCTGGTTCATGAATTTCGGTGATCTACATACCTTTGT  1044

seq1  ACTTTATCTTTTTACAGGGATTCTGGAATATGAGCTCAGGTCCTTAAGTT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATCTTTTTACAGGGATTCTGGAATATGAGCTCAGGTCCTTAAGTT  1094

seq1  TGTCCAGCAAACAGTGTACTGACCAAGTCATCCTCTGACTCCAGATTTTT  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGCAAACAGTGTACTGACCAAGTCATCCTCTGACTCCAGATTTTT  1144

seq1  TTCCTAGAAGGAAAGAACTCAAGTTACCTACTTTGCTTTTCTACTCTTAC  1185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGAAGGAAAGAACTCAAGTTACCTACTTTGCTTTTCTACTCTTAC  1194

seq1  TTCAGATTGAATTC  1199
      ||||||||||||||
seq2  TTCAGATTGAATTC  1208


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