BAC Information

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BAC

Clone NameB6Ng01-328J10
Chromosome12 (Build37)6 (Build37)
Map Location 50,980,211 - 50,981,26980,010,409 - 80,010,627
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036, LOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424, LOC665071, LOC665077
Downstream geneLOC100039455, Prkcm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328J10.bB6Ng01-328J10.g
ACCGA115811GA115812
length1,174429
definitionB6Ng01-328J10.b B6Ng01-328J10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,980,211 - 50,981,269)(80,010,409 - 80,010,627)
sequence
gaattctcatgcacttgaattggtagaattaacatagtaaaaaagttatc
ttaccaaaagccatctacaaattcaatgcaattcccatcaaaattccaac
atgattctctatggaccttgaaagagcaattctcaacttcatatggaaaa
aaaacaaaaatcccaggatagctaaagcaatcctgggcaataaatgaact
tctggaggaatcaccatcacggatttcaagcagaacaaaagatcaataga
aataaacaccacatggtaatgaaatctaatagaagtctgagcaataaacc
cacagatatatggatacttgatttttgacaaacaaactatacaatgaaaa
aataaccaacaacaaagatcttcaacaaatggtgctcgtccaattgagta
tctgcatgtagaagaatggaaacagacccatatttatcacccaacataga
actcatgtccaagtggattaagacatcaaccaaaaactggacacactcaa
tctaatgaagagaaaatgggaaactgccttgaacacattgacacaggata
caacttccttaatagaacagcaatagctcaggaactaagttcaaccatta
ataaatgggacctcatgaaactgtgttatctaaccattcgcattctagac
aaaagaataaaagagaaggaaagaactgcaaacccatgcttttgcttcct
tacagtccagtcttgaatattacagggatattgttgttggtgaactgcac
atgaagacaaaccacaaatgattttgaaatgatattatgtaaattctatt
tgaaatagtaagaatgtaatacaaattcaagttttgatgtcaaattatga
ctctagtggtgttttagagaatctcctatcacaatttattggtttaaaac
tctttcctctttgcataaatcacaagcaatagccactctcttatttctct
ctctcttttttttctttctttttattaatacttagggaacaaagtactag
tcagcaatagtttcaacacttaaagagatctgtccctcaaaaatactcag
agaggaaatacagagacaagtgaggagcagagactgacgaaagacatcca
gagactacccactggatcatcccaattatagagcccacaaaccagacact
gttgtggagccagaagtactgctg

tttaggagtcatcctctttatcttcaagcagcttcatctaataatttgct
ttaaattttattatgtttgttggctattttctttatctacatttcaaatg
ttatcccctttcctggtttcccttcctcctggaaacaccctatcacatcc
tccctcgccctgtttctatgaggatgtttctctacccacacaaccactcc
tacttccccaccctccactgggcatctattgagccttcataggaacaagg
acctctcttcccactgatgcataacaagaccatcctctgctacatatgca
gttggatccatgtgcactctttggttggaggttgagtccctgggagctct
aagggggggggggtctagttggttgatgttgttgttcttcctatggggtt
gcaaacctcttcaactccttcagtccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_50980211_50981269
seq2: B6Ng01-328J10.b_172_1220

seq1  GCAATTCTCAACTTCATATGGAAAAAAAACAAAAATCCCAGGATAGCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTCTCAACTTCATATGGAAAAAAAACAAAAATCCCAGGATAGCTAA  50

seq1  AGCAATCCTGGGCAATAAATGAACTTCTGGAGGAATCACCATCACGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCCTGGGCAATAAATGAACTTCTGGAGGAATCACCATCACGGATT  100

seq1  TCAAGCAGAACAAAAGATCAATAGAAATAAACACCACATGGTAATGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCAGAACAAAAGATCAATAGAAATAAACACCACATGGTAATGAAAT  150

seq1  CTAATAGAAGTCTGAGCAATAAACCCACAGATATATGGATACTTGATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAGAAGTCTGAGCAATAAACCCACAGATATATGGATACTTGATTTT  200

seq1  TGACAAACAAACTATACAATGAAAAAATAACCAACAACAAAGATCTTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAACAAACTATACAATGAAAAAATAACCAACAACAAAGATCTTCAA  250

seq1  CAAATGGTGCTCGTCCAATTGAGTATCTGCATGTAGAAGAATGGAAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGTGCTCGTCCAATTGAGTATCTGCATGTAGAAGAATGGAAACAG  300

seq1  ACCCATATTTATCACCCAACATAGAACTCATGTCCAAGTGGATTAAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATATTTATCACCCAACATAGAACTCATGTCCAAGTGGATTAAGACA  350

seq1  TCAACCAAAAACTGGACACACTCAATCTAATGAAGAGAAAATGGGAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCAAAAACTGGACACACTCAATCTAATGAAGAGAAAATGGGAAACT  400

seq1  GCCTTGAACACATTGACACAGGATACAACTTCCTTAATAGAACAGCAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAACACATTGACACAGGATACAACTTCCTTAATAGAACAGCAATA  450

seq1  GCTCAGGAACTAAGTTCAACCATTAATAAATGGGACCTCATGAAACTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGAACTAAGTTCAACCATTAATAAATGGGACCTCATGAAACTGTG  500

seq1  TTATCTAACCATTCGCATTCTAGACAAAAGAATAAAAGAGAAGGAAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTAACCATTCGCATTCTAGACAAAAGAATAAAAGAGAAGGAAAGAA  550

seq1  CTGCAAACCCATGCTTTTGCTTCCTTACAGTCCAGTCTTGAATATTACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAACCCATGCTTTTGCTTCCTTACAGTCCAGTCTTGAATATTACAG  600

seq1  GGATATTGTTGTTGGTGAACTGCACATGAAGACAAACCACAAATGATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTGTTGTTGGTGAACTGCACATGAAGACAAACCACAAATGATTTT  650

seq1  GAAATGATATTATGTAAATTCTATTTGAAATAGTAAGAATGTAATACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGATATTATGTAAATTCTATTTGAAATAGTAAGAATGTAATACAAA  700

seq1  TTCAAGTTTTGATGTCAAATTATGACTCTAGTGGTGTTTTAGAGAATCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTTTGATGTCAAATTATGACTCTAGTGGTGTTTTAGAGAATCTC  750

seq1  CTATCACAATTTATTGGTTTAAAACTCTTTCCTCTTTGCATAAATCACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACAATTTATTGGTTTAAAACTCTTTCCTCTTTGCATAAATCACAA  800

seq1  GCAATAGCCACTCTCTTATTTCTCTCTCTCTTTTTTTTCTTTTCTTTTTA  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCAATAGCCACTCTCTTATTTCTCTCTCTCTTTTTTTTC-TTTCTTTTTA  849

seq1  TTAATACTTAGGGAACAAAGTACTAGTCAGCAATAGTTTCAACACTTAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTAATACTTAGGGAACAAAGTACTAGTCAGCAATAGTTTCAACACTTAAA  899

seq1  GAGATCTGTCCCTC-AAAATACTCAAGAGAGGAAATACAGAGACAAAGTG  949
      |||||||||||||| ||||||||| ||||||||||||||||||| |||||
seq2  GAGATCTGTCCCTCAAAAATACTC-AGAGAGGAAATACAGAGAC-AAGTG  947

seq1  AGGAGCAGAGACTGAAGGAAAGACCATCCAGAGACTACCCCACCTGGGAT  999
      |||||||||||||| | |||||| ||||||||||||| |||||   ||||
seq2  AGGAGCAGAGACTG-ACGAAAGA-CATCCAGAGACTA-CCCAC--TGGAT  992

seq1  CCATCCCA--TATAGAGCCACCAAACCCAGACACTGTTGTGGAAGCCAAG  1047
       |||||||  |||||||||  |||| |||||||||||||||| |||| ||
seq2  -CATCCCAATTATAGAGCCCACAAA-CCAGACACTGTTGTGG-AGCC-AG  1038

seq1  AAGTACTTGCTG  1059
      |||||| |||||
seq2  AAGTAC-TGCTG  1049


seq1: chr6_80010409_80010627
seq2: B6Ng01-328J10.g_163_500 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  AAGGACTGAAGGAGTTGAAGAGGTTTGCAACCCCATAGGAAGAACAACAA  50

seq1  --------------------------------------------------  0
                                                        
seq2  CATCAACCAACTAGACCCCCCCCCCCTTAGAGCTCCCAGGGACTCAACCT  100

seq1  -----------------AAGG-----ACTGAAGGAGTTGAAG----GGGC  24
                       | ||     |||| |   || | ||     || 
seq2  CCAACCAAAGAGTGCACATGGATCCAACTGCATATGTAGCAGAGGATGGT  150

seq1  CTTATCTGGCAACAATGGGAGGGGAGGCCTTTGGTCCCGTGAAGGC----  70
      ||| |   ||| || ||||| | |||| | ||| |||  |||||||    
seq2  CTTGTTATGCATCAGTGGGAAGAGAGGTCCTTGTTCCTATGAAGGCTCAA  200

seq1  TTGATGCCCCAGTATAGAGGTATGCTAGGGTGGTGAGATGGGAGTGGGTA  120
      | |||||||      || ||      ||||||| ||  | ||||||| | 
seq2  TAGATGCCC------AGTGG------AGGGTGGGGAAGTAGGAGTGGTT-  237

seq1  GGTAGGTGGTTGGGGGAGCACCCTCACAGAAGCAAGGTAACGTGGGATTG  170
       ||  |||| | | | | || ||||| |||| || ||  | |  ||||  
seq2  -GT--GTGGGTAGAGAAACATCCTCATAGAAACAGGGCGAGGGAGGATGT  284

seq1  GGTAGGGAGTT-----GCAGAGGGGAAACCAGGAAATGGGATAACATTTG  215
      | ||||| |||     |  || |||||||||||||| |||||||||||||
seq2  GATAGGGTGTTTCCAGGAGGAAGGGAAACCAGGAAAGGGGATAACATTTG  334

seq1  AAAT  219
      ||||
seq2  AAAT  338


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