BAC Information

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BAC

Clone NameB6Ng01-328K04
Chromosome6 (Build37)
Map Location 12,802,593 - 12,896,167
singlet/doubletdoublet
Overlap geneLOC667735
Upstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879, Thsd7a
Downstream geneLOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328K04.bB6Ng01-328K04.g
ACCGA115841GA115842
length1,1601,178
definitionB6Ng01-328K04.b B6Ng01-328K04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,895,001 - 12,896,167)(12,802,593 - 12,803,782)
sequence
gaattcatggtttgtattcatctggttcttgactctgtaactcgccactt
ttctttgttgaattatttatataaaaatgaatgcatcttaactgttattt
aattggcagtatctaataatatctcttatttttgaattgccttgtggaca
tgagaacatggtcctgaaattcatttggaaattttgagggctgtcctaga
taattctatttctggaaaattactgacatgccagaatattctttcaaaat
ctcttcttacatttttgtcagttcctcttcttttatcttgagctcaacct
ttgaactttttctattagtattttaaattgtttgcttgctaactagatga
ctagacaaacgtacagaagagcatcccagagaagaatgcatggattgtgg
taaatgaattgtgactcagtctctcagatcactgaattcctagcaggcca
gatggggacaatctgaatctctcttgtaatgtttcacatgtgttatatta
ggtaagaatgttcagctctatgcatttgttttcttatgtatcaaaattat
atagtagcatcctatactagacacctggaatatgaaaagtattcaataaa
tatgaacgatttagtagtggtaaaatgataatataataaaataataaaat
aaataaaataataaaaataataatagctaataaaatgaacaccaaatcct
aatctgtgtctattattaacagaatttatatcaggctgaatattttctgc
ataaaagagaaattaaattcaacaacttatgttccataatcagcattatc
tttcatagtgtttcatcaacttttttaagaaatcaaagacaaccaaaata
acaagcatgaccaaacatggaatttttgagtttaaaccaagaagatagtt
tgtttgacagatagtctctcatgtaacctagtctggcctcagattttctg
tgtaacaaggaaaatgctttacaaagtgttggcatcacataagagcgctt
cagaatgtcctttgggatgaggtgttttatctcatgtcttagaagagtgt
cctaagtagtacatccactcagcatgaaatattactgcttgggttcttag
ggtgggcatatgatgattcacatgccttgaaagcatctggatcagagata
gcttctaatg

gaattcactgggcatgcaacatcaaaatccagcatactataggagttaac
agacatttctttttctcagtttcagaagttaggaatcaaggtgaagttgt
cagtaaggtttgtttgcactcctactttcctcatgtatctttttatcccc
aattcttcacatgacaaggcttacacaaatgacctaattttaccgtaact
gcttccttggacattggaggtctgatttctaaatactgttacattgtaaa
gtcttaggagttaggctctaacataaatcttttgaagaaaaaccatcaac
tccataagagttgcaaaataaaaagcagcaaaaataaggaagataatttt
ctatgaaagtacagagaaaggccaggactctgagctgaaggccaccgaca
ctgaagcagaagataattgcaagctcttggactatctgtttacactggct
gtccttatccaaagcaaaagttaactttctcttttcaagataggagacaa
ttcggtaactaaaacattatgaactaaccagtaccccggaacgcttgact
ctagctgcatatgtatcaaaagagaaagaaagagaggcccattggagttg
caaactttatatgccccagtacaggggaacgtcagggccaaaaaaaagtt
ctcattgacgaaatgtcaatttgtttgtgagacattggcaggagtggaaa
tatttccaccataaacagttgccaaacattgctttattctctgtgactcc
acctaccacaaaccattgtttaggcattgatctactcactcttatttaag
cagaatatatagaagccaagcagtgcagaccaattagtgctatttagaca
ataatatatttgtctgtcagatgctatgaagactgaagagatatccagga
ctaggacttgagatatgaattcaaaaacacagcaatatgaagcaggtctt
tcaaacaaacaccaccaaaaccaaaaacaggattactttcaagttaaagc
cctagtaaagagggatagagcagagaggagaggatgatcagaaatatatc
aaagagagtgaggatagtaaaaaggtatttgggacagaccagcaatccat
agctgacaattctcttaatcaggaacaggcaatatggctccaggaattat
atcactgacaatttgatattctcaaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_12895001_12896167
seq2: B6Ng01-328K04.b_51_1210 (reverse)

seq1  CATTAGAAGCTATCTCTAATCAAGGATGCTTTCAAGGGCATGTGAATTCA  50
      ||||||||||||||||| ||| | ||||||||||| |||||||||| |||
seq2  CATTAGAAGCTATCTCTGATCCA-GATGCTTTCAA-GGCATGTGAA-TCA  47

seq1  TCATAATGCCCCACCCTA--GACCCAAGCAGTAATATTTTCATGCTGAGT  98
      |||| ||| |||||||||   ||||||||||||||| |||||||||||||
seq2  TCAT-ATG-CCCACCCTAAGAACCCAAGCAGTAATA-TTTCATGCTGAGT  94

seq1  -GATGTACTTACTTAGGACACTTCTTCTAAGACATGAGATAAAACACCTC  147
       ||||||| |||||||||||| ||||||||||||||||||||||||||||
seq2  GGATGTAC-TACTTAGGACAC-TCTTCTAAGACATGAGATAAAACACCTC  142

seq1  ATCCCAAAGGACATTCCTGAAGCGCTTCTTATGTGATGCCAACACTTTGT  197
      ||||||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  ATCCCAAAGGACATT-CTGAAGCGC-TCTTATGTGATGCCAACACTTTGT  190

seq1  AAAGCATTTTCCTTGTTACACAGAAAATCTGAGGCCAGACTAGGTTACAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTTTCCTTGTTACACAGAAAATCTGAGGCCAGACTAGGTTACAT  240

seq1  GAGAGACTATCTGTCAAACAAACTATCTTCTTGGTTTAAACTCAAAAATT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACTATCTGTCAAACAAACTATCTTCTTGGTTTAAACTCAAAAATT  290

seq1  CCATGTTTGGTCATGCTTGTTATTTTGGTTGTCTTTGATTTCTTAAAAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTTGGTCATGCTTGTTATTTTGGTTGTCTTTGATTTCTTAAAAAA  340

seq1  GTTGATGAAACACTATGAAAGATAATGCTGATTATGGAACATAAGTTGTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGAAACACTATGAAAGATAATGCTGATTATGGAACATAAGTTGTT  390

seq1  GAATTTAATTTCTCTTTTATGCAGAAAATATTCAGCCTGATATAAATTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAATTTCTCTTTTATGCAGAAAATATTCAGCCTGATATAAATTCT  440

seq1  GTTAATAATAGACACAGATTAGGATTTGGTGTTCATTTTATTAGCTATTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATAATAGACACAGATTAGGATTTGGTGTTCATTTTATTAGCTATTA  490

seq1  TTATTTTTATTATTTTATTTATTTTATTATTTTATTATATTATCATTTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTATTATTTTATTTATTTTATTATTTTATTATATTATCATTTTA  540

seq1  CCACTACTAAATCGTTCATATTTATTGAATACTTTTCATATTCCAGGTGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTACTAAATCGTTCATATTTATTGAATACTTTTCATATTCCAGGTGT  590

seq1  CTAGTATAGGATGCTACTATATAATTTTGATACATAAGAAAACAAATGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTATAGGATGCTACTATATAATTTTGATACATAAGAAAACAAATGCA  640

seq1  TAGAGCTGAACATTCTTACCTAATATAACACATGTGAAACATTACAAGAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTGAACATTCTTACCTAATATAACACATGTGAAACATTACAAGAG  690

seq1  AGATTCAGATTGTCCCCATCTGGCCTGCTAGGAATTCAGTGATCTGAGAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAGATTGTCCCCATCTGGCCTGCTAGGAATTCAGTGATCTGAGAG  740

seq1  ACTGAGTCACAATTCATTTACCACAATCCATGCATTCTTCTCTGGGATGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTCACAATTCATTTACCACAATCCATGCATTCTTCTCTGGGATGC  790

seq1  TCTTCTGTACGTTTGTCTAGTCATCTAGTTAGCAAGCAAACAATTTAAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTACGTTTGTCTAGTCATCTAGTTAGCAAGCAAACAATTTAAAA  840

seq1  TACTAATAGAAAAAGTTCAAAGGTTGAGCTCAAGATAAAAGAAGAGGAAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATAGAAAAAGTTCAAAGGTTGAGCTCAAGATAAAAGAAGAGGAAC  890

seq1  TGACAAAAATGTAAGAAGAGATTTTGAAAGAATATTCTGGCATGTCAGTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAAATGTAAGAAGAGATTTTGAAAGAATATTCTGGCATGTCAGTA  940

seq1  ATTTTCCAGAAATAGAATTATCTAGGACAGCCCTCAAAATTTCCAAATGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCAGAAATAGAATTATCTAGGACAGCCCTCAAAATTTCCAAATGA  990

seq1  ATTTCAGGACCATGTTCTCATGTCCACAAGGCAATTCAAAAATAAGAGAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGGACCATGTTCTCATGTCCACAAGGCAATTCAAAAATAAGAGAT  1040

seq1  ATTATTAGATACTGCCAATTAAATAACAGTTAAGATGCATTCATTTTTAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAGATACTGCCAATTAAATAACAGTTAAGATGCATTCATTTTTAT  1090

seq1  ATAAATAATTCAACAAAGAAAAGTGGCGAGTTACAGAGTCAAGAACCAGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAATTCAACAAAGAAAAGTGGCGAGTTACAGAGTCAAGAACCAGA  1140

seq1  TGAATACAAACCATGAATTC  1167
      ||||||||||||||||||||
seq2  TGAATACAAACCATGAATTC  1160


seq1: chr6_12802593_12803782
seq2: B6Ng01-328K04.g_70_1247

seq1  GAATTCACTGGGCATGCAACATCAAAATCCAGCATACTATAGGAGTTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGGCATGCAACATCAAAATCCAGCATACTATAGGAGTTAAC  50

seq1  AGACATTTCTTTTTCTCAGTTTCAGAAGTTAGGAATCAAGGTGAAGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTCTTTTTCTCAGTTTCAGAAGTTAGGAATCAAGGTGAAGTTGT  100

seq1  CAGTAAGGTTTGTTTGCACTCCTACTTTCCTCATGTATCTTTTTATCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGGTTTGTTTGCACTCCTACTTTCCTCATGTATCTTTTTATCCCC  150

seq1  AATTCTTCACATGACAAGGCTTACACAAATGACCTAATTTTACCGTAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCACATGACAAGGCTTACACAAATGACCTAATTTTACCGTAACT  200

seq1  GCTTCCTTGGACATTGGAGGTCTGATTTCTAAATACTGTTACATTGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTTGGACATTGGAGGTCTGATTTCTAAATACTGTTACATTGTAAA  250

seq1  GTCTTAGGAGTTAGGCTCTAACATAAATCTTTTGAAGAAAAACCATCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGGAGTTAGGCTCTAACATAAATCTTTTGAAGAAAAACCATCAAC  300

seq1  TCCATAAGAGTTGCAAAATAAAAAGCAGCAAAAATAAGGAAGATAATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAGAGTTGCAAAATAAAAAGCAGCAAAAATAAGGAAGATAATTTT  350

seq1  CTATGAAAGTACAGAGAAAGGCCAGGACTCTGAGCTGAAGGCCACCGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAAGTACAGAGAAAGGCCAGGACTCTGAGCTGAAGGCCACCGACA  400

seq1  CTGAAGCAGAAGATAATTGCAAGCTCTTGGACTATCTGTTTACACTGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCAGAAGATAATTGCAAGCTCTTGGACTATCTGTTTACACTGGCT  450

seq1  GTCCTTATCCAAAGCAAAAGTTAACTTTCTCTTTTCAAGATAGGAGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTATCCAAAGCAAAAGTTAACTTTCTCTTTTCAAGATAGGAGACAA  500

seq1  TTCGGTAACTAAAACATTATGAACTAACCAGTACCCCGGAACGCTTGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTAACTAAAACATTATGAACTAACCAGTACCCCGGAACGCTTGACT  550

seq1  CTAGCTGCATATGTATCAAAAGAGAAAGAAAGAGAGGCCCATTGGAGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGCATATGTATCAAAAGAGAAAGAAAGAGAGGCCCATTGGAGTTG  600

seq1  CAAACTTTATATGCCCCAGTACAGGGGAACGTCAGGGCCAAAAAAAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTTATATGCCCCAGTACAGGGGAACGTCAGGGCCAAAAAAAAGTT  650

seq1  CTCATTGACGAAATGTCAATTTGTTTGTGAGACATTGGCAGGAGTGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGACGAAATGTCAATTTGTTTGTGAGACATTGGCAGGAGTGGAAA  700

seq1  TATTTCCACCATAAACAGTTGCCAAACATTGCTTTATTCTCTGTGACTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCACCATAAACAGTTGCCAAACATTGCTTTATTCTCTGTGACTCC  750

seq1  ACCTACCACAAACCATTGTTTAGGCATTGATCTACTCACTCTTATTTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCACAAACCATTGTTTAGGCATTGATCTACTCACTCTTATTTAAG  800

seq1  CAGAATATATAGAAGCCAAGCAGTGCAGACCAATTAGTGCTATTTAGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATATATAGAAGCCAAGCAGTGCAGACCAATTAGTGCTATTTAGACA  850

seq1  ATAATATATTTGTCTGTCAGATGCTATGAAGACTGAAGAGATATCCAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATATTTGTCTGTCAGATGCTATGAAGACTGAAGAGATATCCAGGA  900

seq1  CTAGGACTTGAAGATATGAATTC-AAAACACAGCAATATGAAGCAGGGTC  949
      |||||||||| |||||||||||| ||||||||||||||||||||| ||||
seq2  CTAGGACTTG-AGATATGAATTCAAAAACACAGCAATATGAAGCA-GGTC  948

seq1  TTTCAAACAAACACCACCAAAACCAAAAACAGGATTACTTTCAAGTTAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACAAACACCACCAAAACCAAAAACAGGATTACTTTCAAGTTAAA  998

seq1  G-CCTAGTAAAGAGGGATAAGAAGCAGAGAAGAGAGGATGATCAGAAATA  1048
      | |||||||||||||||||   |||||||| |||||||||||||||||||
seq2  GCCCTAGTAAAGAGGGATA--GAGCAGAGAGGAGAGGATGATCAGAAATA  1046

seq1  TAATTCAAAGGAGAGTGAGGAATAGTAAAAAGGTATTTGGAACAGACCAG  1098
      ||  ||||| |||||||||| ||||||||||||||||||| |||||||||
seq2  TA--TCAAA-GAGAGTGAGG-ATAGTAAAAAGGTATTTGGGACAGACCAG  1092

seq1  CAAATACATAGCTGTACAATTCTCTAAATCAAGAAACAGGGAATATGGTT  1148
      | ||| |||||||| |||||||||| |||| || |||||| |||||||  
seq2  C-AATCCATAGCTG-ACAATTCTCTTAATC-AGGAACAGGCAATATGG-C  1138

seq1  TCCAGGGAAATATATCACTGACCAAATTGATAATCTCAAGGT  1190
      |||| |||| ||||||||||| ||| |||||| |||||||||
seq2  TCCA-GGAATTATATCACTGA-CAATTTGATATTCTCAAGGT  1178


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