BAC Information

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BAC

Clone NameB6Ng01-329I02
Chromosome6 (Build37)
Map Location 79,536,589 - 79,640,666
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC384440, LOC621815
Downstream geneLOC100043392, Lrrtm4, LOC100043390
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329I02.bB6Ng01-329I02.g
ACCGA116449GA116450
length1,120952
definitionB6Ng01-329I02.b B6Ng01-329I02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,536,589 - 79,537,721)(79,640,076 - 79,640,666)
sequence
gaattcatcaaggtgttatattcattgattctttttttaaaatttaagta
tggtgtggtagtggatgcgcctgtgtaagtgtggtgtaaataaatgcacc
ctcatcccacagaatctgtagggaggtgttgagagtcatgttctttcatt
ttatgccttattcccttgagagagcgtctctcactgaaactgggctgaaa
cttgactcaccaaccttaagtaaacaatcattgttcatcttcacatatca
cagagtttacaggtccataatccacagtgcttaacttttacacgagtcct
gggggtttgaactcaggtctttgtgcaggatgtgttcttatgcactcaac
tatttccgctgccttgaacaaggctctagaatttgaagtaatattgaaag
tagttgagctgttcattttatgaacagctgtgaaatggaaagaccctggt
ggaccaaactgctttcactcatacatcaatgaaatagtcattatagtcca
taagtgaattgcctttttgcatacaaggaggttacataaataggcaggag
ccttgaagttggaaattgacaaggtccagcctcagctaggtccaagttcc
tgagaggggtatttgggagcagcgaaaagaaatgactggaaatcaaatta
tggagacaacaaattgtggggacaaactggtggcttaggttctgctgaga
tggcattccatattgtgttctctctctctctctccctccctctcttctac
tttgtgttctactacgctctagagagcttttgcttgctattctagaatct
cacaggttgagacaagctctctctgctagtcaaaattctaaaacttgctg
gatagcttaagggttttctgagaaagtcagagaagctgctataaaaaaaa
acaaaagaaacaaacaaaacaaaacaaaactttgatattctgattgagtc
agaatcctgttagagaacatctaaagaaattttgggattttccaatcaaa
tcagaaagacaaaaatattctaagagactgtgtcactctttagacagctt
ctctggtagctgctagagaaatctacaagagcctgtgttcacactgtagt
cctgtctttggtcagaaatc

gaattctcagagtcctgctgatatcaggaacaaacaagttaaaacctctc
cttttcctatctaccaagtacccataaggcataccaagaatttataaact
gcacccagttcctgccctccatttttcatcccacaactcttcctgaagtc
acagacgcttgccagaaccaggcacactcagatgggtaaaggccagtgta
agaagacaatcaacaagagccaagaaatgtggcaccacctgatcccagcc
atcctagccacctgatccagccagtaagccctggatactctaaaacagct
gaagcataagaaaatgagcttaagtctaatcttatgaagatgatagaagc
cttaaaggaaattaatgtatccattaaagaagtccaggaaaacattatgt
aatcaaacaggtgaaggaaattactaaaactgttcaagacctgaaaatgg
gaataagaagaaataaaataaaataaccaccaccacaacaaaaaaaaaac
agaacaaaagaaaagaaaaacaaacaaacagaaaaacatcctggagatgg
aaaaccaagtaacagaaggcacaaacacaataatcacctacagaatccaa
gaaacagaagagagaatatcaggcatcaaagatactatagaagaaatcaa
tacatctgtcagacaaattacaaatctaatatttcctgacacaatttatc
cagaaaatctagaacagtatgaaaagaccgaacctaagaataacagaaat
agaagaagaatattctcagctcaaaggcccagagaatatttttaatatgg
aagaaaatttccaaacctaaagaaagataggcctataaacatacaagaag
tttctagatcaccaaatagattagaccagaaaagaaaatcctcctgccac
acaataatcaaaacactaaatgtacagaacaaacagagactattaaaatc
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_79536589_79537721
seq2: B6Ng01-329I02.b_45_1164

seq1  GAATTCATCAAGGTGTTATATTCATTGATTCTTTTTTTAAAATTTAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAAGGTGTTATATTCATTGATTCTTTTTTTAAAATTTAAGTA  50

seq1  TGGTGTGGTAGTGGATGCGCCTGTGTAAGTGTGGTGTAAATAAATGCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGGTAGTGGATGCGCCTGTGTAAGTGTGGTGTAAATAAATGCACC  100

seq1  CTCATCCCACAGAATCTGTAGGGAGGTGTTGAGAGTCATGTTCTTTCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCCACAGAATCTGTAGGGAGGTGTTGAGAGTCATGTTCTTTCATT  150

seq1  TTATGCCTTATTCCCTTGAGAGAGCGTCTCTCACTGAAACTGGGCTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCCTTATTCCCTTGAGAGAGCGTCTCTCACTGAAACTGGGCTGAAA  200

seq1  CTTGACTCACCAACCTTAAGTAAACAATCATTGTTCATCTTCACATATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTCACCAACCTTAAGTAAACAATCATTGTTCATCTTCACATATCA  250

seq1  CAGAGTTTACAGGTCCATAATCCACAGTGCTTAACTTTTACACGAGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTACAGGTCCATAATCCACAGTGCTTAACTTTTACACGAGTCCT  300

seq1  GGGGGTTTGAACTCAGGTCTTTGTGCAGGATGTGTTCTTATGCACTCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTTTGAACTCAGGTCTTTGTGCAGGATGTGTTCTTATGCACTCAAC  350

seq1  TATTTCCGCTGCCTTGAACAAGGCTCTAGAATTTGAAGTAATATTGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCGCTGCCTTGAACAAGGCTCTAGAATTTGAAGTAATATTGAAAG  400

seq1  TAGTTGAGCTGTTCATTTTATGAACAGCTGTGAAATGGAAAGACCCTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGAGCTGTTCATTTTATGAACAGCTGTGAAATGGAAAGACCCTGGT  450

seq1  GGACCAAACTGCTTTCACTCATACATCAATGAAATAGTCATTATAGTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAAACTGCTTTCACTCATACATCAATGAAATAGTCATTATAGTCCA  500

seq1  TAAGTGAATTGCCTTTTTGCATACAAGGAGGTTACATAAATAGGCAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAATTGCCTTTTTGCATACAAGGAGGTTACATAAATAGGCAGGAG  550

seq1  CCTTGAAGTTGGAAATTGACAAGGTCCAGCCTCAGCTAGGTCCAAGTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAGTTGGAAATTGACAAGGTCCAGCCTCAGCTAGGTCCAAGTTCC  600

seq1  TGAGAGGGGTATTTGGGAGCAGCGAAAAGAAATGACTGGAAATCAAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGGGTATTTGGGAGCAGCGAAAAGAAATGACTGGAAATCAAATTA  650

seq1  TGGAGACAACAAATTGTGGGGACAAACTGGTGGCTTAGGTTCTGCTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACAACAAATTGTGGGGACAAACTGGTGGCTTAGGTTCTGCTGAGA  700

seq1  TGGCATTCCATATTGTGTTCTCTCTCTCTCTCTCCCTCCCTCTCTTCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTCCATATTGTGTTCTCTCTCTCTCTCTCCCTCCCTCTCTTCTAC  750

seq1  TTTGTGTTCTACTACGCTCTAGAGAGCTTTTGCTTGCTATTCTAGAATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTCTACTACGCTCTAGAGAGCTTTTGCTTGCTATTCTAGAATCT  800

seq1  CACAGGTTGAGACAAGCTCTCTCTGCTAGTCAAAATTCTAAAACTTGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTTGAGACAAGCTCTCTCTGCTAGTCAAAATTCTAAAACTTGCTG  850

seq1  GATAGCTTAAGGGTTTTCTGAGAAAGTCAGAGAAGCTGCTATAAAAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCTTAAGGGTTTTCTGAGAAAGTCAGAGAAGCTGCTATAAAAAAAA  900

seq1  ACAAAAGAAACAAACAAAACAAAACAAAACTTTGATATTCTGATTGAGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGAAACAAACAAAACAAAACAAAACTTTGATATTCTGATTGAGTC  950

seq1  AGAAATCCTGTTAGAGAACATCTAAAAGAAATTTT-GGATTTTCCAATCA  999
      || |||||||||||||||||||| ||||||||||| ||||||||||||| 
seq2  AG-AATCCTGTTAGAGAACATCT-AAAGAAATTTTGGGATTTTCCAATC-  997

seq1  AAATCAGAAAGACAAAAAATAATTCTAAGAGGACTGTGTTCACTCTTTAG  1049
      ||||||||||||||||||   ||||||||| ||||||| |||||||||||
seq2  AAATCAGAAAGACAAAAA--TATTCTAAGA-GACTGTG-TCACTCTTTAG  1043

seq1  ACAGCCTTCTCTGGGTAGCTGCTAGAGAAAATTCTACAAGAG-CTGTGTC  1098
      |||| ||||||| |||||||||||||||||  |||||||||| |||||| 
seq2  ACAG-CTTCTCT-GGTAGCTGCTAGAGAAA--TCTACAAGAGCCTGTGTT  1089

seq1  AACACTGTAATTCTTGGTCTTTTTGGTCAGAAATC  1133
       |||||||| | ||  |||  ||||||||||||||
seq2  CACACTGTAGTCCT--GTC--TTTGGTCAGAAATC  1120


seq1: chr6_79640076_79640666
seq2: B6Ng01-329I02.g_66_656 (reverse)

seq1  GTAGGTGATTATTGTGTTTGTGCCTTCTGTTACTTGGTTTTCCATCTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTGATTATTGTGTTTGTGCCTTCTGTTACTTGGTTTTCCATCTCCA  50

seq1  GGATGTTTTTCTGTTTGTTTGTTTTTCTTTTCTTTTGTTCTGTTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTTTTCTGTTTGTTTGTTTTTCTTTTCTTTTGTTCTGTTTTTTTT  100

seq1  TTGTTGTGGTGGTGGTTATTTTATTTTATTTCTTCTTATTCCCATTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTGGTGGTGGTTATTTTATTTTATTTCTTCTTATTCCCATTTTCA  150

seq1  GGTCTTGAACAGTTTTAGTAATTTCCTTCACCTGTTTGATTACATAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGAACAGTTTTAGTAATTTCCTTCACCTGTTTGATTACATAATGT  200

seq1  TTTCCTGGACTTCTTTAATGGATACATTAATTTCCTTTAAGGCTTCTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGACTTCTTTAATGGATACATTAATTTCCTTTAAGGCTTCTATC  250

seq1  ATCTTCATAAGATTAGACTTAAGCTCATTTTCTTATGCTTCAGCTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCATAAGATTAGACTTAAGCTCATTTTCTTATGCTTCAGCTGTTTT  300

seq1  AGAGTATCCAGGGCTTACTGGCTGGATCAGGTGGCTAGGATGGCTGGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATCCAGGGCTTACTGGCTGGATCAGGTGGCTAGGATGGCTGGGAT  350

seq1  CAGGTGGTGCCACATTTCTTGGCTCTTGTTGATTGTCTTCTTACACTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGTGCCACATTTCTTGGCTCTTGTTGATTGTCTTCTTACACTGGC  400

seq1  CTTTACCCATCTGAGTGTGCCTGGTTCTGGCAAGCGTCTGTGACTTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCCATCTGAGTGTGCCTGGTTCTGGCAAGCGTCTGTGACTTCAGG  450

seq1  AAGAGTTGTGGGATGAAAAATGGAGGGCAGGAACTGGGTGCAGTTTATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTGTGGGATGAAAAATGGAGGGCAGGAACTGGGTGCAGTTTATAA  500

seq1  ATTCTTGGTATGCCTTATGGGTACTTGGTAGATAGGAAAAGGAGAGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGGTATGCCTTATGGGTACTTGGTAGATAGGAAAAGGAGAGGTTT  550

seq1  TAACTTGTTTGTTCCTGATATCAGCAGGACTCTGAGAATTC  591
      |||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGTTTGTTCCTGATATCAGCAGGACTCTGAGAATTC  591


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