BAC Information

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BAC

Clone NameB6Ng01-329O01
Chromosome6 (Build37)6 (Build37)
Map Location 15,131,813 - 15,132,96215,174,761 - 15,175,818
singlet/doubletsingletsinglet
Overlap geneFoxp2
Upstream geneLOC100040513, LOC667797, Ppp1r3a, LOC100040568
Downstream geneMdfic
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329O01.bB6Ng01-329O01.g
ACCGA116719GA116720
length1,1491,180
definitionB6Ng01-329O01.b B6Ng01-329O01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,131,813 - 15,132,962)(15,174,761 - 15,175,818)
sequence
gaattctctttatttaagcttaaatagaaaataagtatagcactccaaat
acagagaccaccatctttgaagactggaacttcacagtaatgctacagaa
caaagctggctacctcccccggctcctgttctgtgtgaatgtgtacttca
gctttccactgtttgaaatggtagctaccatctagtacatgccactggct
tagtttagattttattgttacggagcttcaatcctggtagcactgggtcc
atcctcctgctagatgtgctgttgctttcaaagatgatatttaacccgtg
ccctggctcattcggtctgtgttccttatagattcctctgcactagagag
aacaaccaagtcttctcaaaactgacaattgttcaggggattttcatctc
atacccaaattaggtgaaatttgacctttcttaatccttccgcctaacaa
gatctagggaaaacaaactgaggtttgactgggactttagcatgcacaca
gtaggtcctcaatgtttttaaaagaaaagctgagtgaggtattgctatgc
tttactttgaattatgtctgttctgagtaacatctgtgtcacaggaaatc
atcaccagtctcttgcaaggagcatgctaataggctaattcatcgtcaag
aaattcaaagatgtttaaggtttttgctattagaaagaagaagagattat
aacaagacaaaggaaaaaaacataatattctggtttacaacctgtttctg
aaatcgtcactgcccttttggaagacctaagttaaggtttttccactggg
tgatagcatcccctgaccacataccttgccacgggggttataaaataaaa
ggggctttattatctaaaggtaatgtagttacagtctcttatgttaggta
gattttggttgtgaaaactggcatggagaatctatcattttcttcaataa
cctgcagttattcccaggtgatactgaaactaagtgtgttgatggcaaag
attatggggctctctagagcaaatggctttacacaaagatgtacacttct
tcccttaacaacattttcatgattggtttgttgtaacactgagaaagtat
ttggcatagtattatttctttcaagtttttgtaaccgttaatgtgtgct
acctttgtgactgtgctgttctgattactcacggaatgtgagtggagctc
tgatccgcggatggcataccttcctagttcctttgtgtgtatgtggccgt
gtgcgtgcgggtttcgcgcgccctcctgctgtgtgcttgtgtgcgctgca
ctttgtgatgagaatatgttctctgactcaagtagtgctctatgtgaaga
gaaaaagatattttcaaatggaaatttctcctttcaatttgaattcccat
tcttggaccaggagactcctatttgccatttacctatttgtttttggctc
tgtgacttccttgtgcccctcggggcaaatatcctacattttgaatgtga
gttctgataatttgttcactgtgaatttatcttaactacgactgatggca
ttaattttctccaactgtctttgaatgattgaaaggaactccctcggttt
attccttttgtctcctttaatatgcatccctctgataacacggttttctc
ccatatgattacaattgtcttttttgcgtatgctagttcgtgctgggtac
tggtacctatacttcacggtgtctaccctggttactttcctcaagaaggg
accctcaactctgaccataacagacttctaaagaatatttgttttgagac
gcagtagaaggacctatcccatccgatacgatctgtcatggagatttgtg
gttgaggatgatgaactctattcatcctcatatatttctcaagaaactcc
aacttttcttgtggctgtcttgctttatgtaatgactatttatgaaggtc
tccttctagatttaaagggcactggtgacctcaccttgtgactttgtctg
tagctctcaggcttccttcttccttttatttccattgaattattcaatac
ttaatgtacctctaagtcataggtaagtacacctactcttttctctgtgt
ctgtttcttagagtcttaaattttctcttctgtctatatattttagctag
ttttctttgcgtacttcaagtctagtttaaataattttagtttaagatac
aactaatcaaacaaacagccaaacacatgtgtgtataagctcccacaaga
tagacttgaatgtctattacatcttgaggttgccatagagaacaacccaa
catgacttaagtgggacttggtcactgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_15131813_15132962
seq2: B6Ng01-329O01.b_46_1194

seq1  GAATTCTCTTTATTTAAGCTTAAATAGAAAATAAGTATAGCACTCCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTATTTAAGCTTAAATAGAAAATAAGTATAGCACTCCAAAT  50

seq1  ACAGAGACCACCATCTTTGAAGACTGGAACTTCACAGTAATGCTACAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACCACCATCTTTGAAGACTGGAACTTCACAGTAATGCTACAGAA  100

seq1  CAAAGCTGGCTACCTCCCCCGGCTCCTGTTCTGTGTGAATGTGTACTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTGGCTACCTCCCCCGGCTCCTGTTCTGTGTGAATGTGTACTTCA  150

seq1  GCTTTCCACTGTTTGAAATGGTAGCTACCATCTAGTACATGCCACTGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCACTGTTTGAAATGGTAGCTACCATCTAGTACATGCCACTGGCT  200

seq1  TAGTTTAGATTTTATTGTTACGGAGCTTCAATCCTGGTAGCACTGGGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTAGATTTTATTGTTACGGAGCTTCAATCCTGGTAGCACTGGGTCC  250

seq1  ATCCTCCTGCTAGATGTGCTGTTGCTTTCAAAGATGATATTTAACCCGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCTGCTAGATGTGCTGTTGCTTTCAAAGATGATATTTAACCCGTG  300

seq1  CCCTGGCTCATTCGGTCTGTGTTCCTTATAGATTCCTCTGCACTAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTCATTCGGTCTGTGTTCCTTATAGATTCCTCTGCACTAGAGAG  350

seq1  AACAACCAAGTCTTCTCAAAACTGACAATTGTTCAGGGGATTTTCATCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCAAGTCTTCTCAAAACTGACAATTGTTCAGGGGATTTTCATCTC  400

seq1  ATACCCAAATTAGGTGAAATTTGACCTTTCTTAATCCTTCCGCCTAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAAATTAGGTGAAATTTGACCTTTCTTAATCCTTCCGCCTAACAA  450

seq1  GATCTAGGGAAAACAAACTGAGGTTTGACTGGGACTTTAGCATGCACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGGGAAAACAAACTGAGGTTTGACTGGGACTTTAGCATGCACACA  500

seq1  GTAGGTCCTCAATGTTTTTAAAAGAAAAGCTGAGTGAGGTATTGCTATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTCCTCAATGTTTTTAAAAGAAAAGCTGAGTGAGGTATTGCTATGC  550

seq1  TTTACTTTGAATTATGTCTGTTCTGAGTAACATCTGTGTCACAGGAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTGAATTATGTCTGTTCTGAGTAACATCTGTGTCACAGGAAATC  600

seq1  ATCACCAGTCTCTTGCAAGGAGCATGCTAATAGGCTAATTCATCGTCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAGTCTCTTGCAAGGAGCATGCTAATAGGCTAATTCATCGTCAAG  650

seq1  AAATTCAAAGATGTTTAAGGTTTTTGCTATTAGAAAGAAGAAGAGATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAAAGATGTTTAAGGTTTTTGCTATTAGAAAGAAGAAGAGATTAT  700

seq1  AACAAGACAAAGGAAAAAAACATAATATTCTGGTTTACAACCTGTTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGACAAAGGAAAAAAACATAATATTCTGGTTTACAACCTGTTTCTG  750

seq1  AAATCGTCACTGCCCTTTTGGAAGACCTAAGTTAAGGTTTTTCCACTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGTCACTGCCCTTTTGGAAGACCTAAGTTAAGGTTTTTCCACTGGG  800

seq1  TGATAGCATCCCCTGACCACATACCTTGCCACGGGGGTTATAAAATAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCATCCCCTGACCACATACCTTGCCACGGGGGTTATAAAATAAAA  850

seq1  GGGGCTTTATTATCT-AAGGTAATGTAGTTACAGTCTCTTATGTTAGGTA  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGGGCTTTATTATCTAAAGGTAATGTAGTTACAGTCTCTTATGTTAGGTA  900

seq1  GATTTTGGTTGTGAAAACTGGCATGGAGAATCTATCATTTTCTTCAATAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGGTTGTGAAAACTGGCATGGAGAATCTATCATTTTCTTCAATAA  950

seq1  CCTGCAGTTATTCCCAGGTGATACTGAAACTAAGGTGTGTTGATGGCAAA  999
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCTGCAGTTATTCCCAGGTGATACTGAAACTAA-GTGTGTTGATGGCAAA  999

seq1  GGATATGGGGCTCTCTAGGAGCAAATGGCCTTAACACAAAGGATGTACAC  1049
      |  |||||||||||||| |||||||||| ||| ||||||| |||||||||
seq2  GATTATGGGGCTCTCTA-GAGCAAATGG-CTTTACACAAA-GATGTACAC  1046

seq1  T--CTCCCCTAAC-ACATTTTTCCATGATT-GTTTG-TGT-ACACTGAG-  1092
      |   |||| |||| |||||||  ||||||| ||||| ||| |||||||| 
seq2  TTCTTCCCTTAACAACATTTT--CATGATTGGTTTGTTGTAACACTGAGA  1094

seq1  AAGTATTTGCATTAGTTAATTATTTCTTTTTCAAGTTTTTGTCACC-TTT  1141
      |||||||||   ||||  ||||||||  |||||||||||||| ||| || 
seq2  AAGTATTTGGCATAGT--ATTATTTC--TTTCAAGTTTTTGTAACCGTTA  1140

seq1  ATGTGTGCT  1150
      |||||||||
seq2  ATGTGTGCT  1149

seq1: chr6_15174761_15175818
seq2: B6Ng01-329O01.g_141_1180

seq1  GTGCGCTGCAGTTTGTGATGAGAATATGTTCTCTGACTCAAGTAGTGCTC  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTGCGCTGCACTTTGTGATGAGAATATGTTCTCTGACTCAAGTAGTGCTC  50

seq1  TATGTGAAGAGAAAAAGATAAGTAAAAATGGAAATTTCTCCTTTCTATTT  100
      ||||||||||||||||||||  |  |||||||||||||||||||| ||||
seq2  TATGTGAAGAGAAAAAGATATTTTCAAATGGAAATTTCTCCTTTCAATTT  100

seq1  TATTTTTAATTAAGGGACCAGTATCCTCCTATTTGCCATTTACCTATTTG  150
       | ||   |||   ||||||| |  |||||||||||||||||||||||||
seq2  GAATTCCCATTCTTGGACCAGGAGACTCCTATTTGCCATTTACCTATTTG  150

seq1  TAGCTGGTTCTGTGACATCCACATGTACATTGCTGCAAATATACTACATT  200
      |   ||| |||||||| |||   ||  | | |  |||||||| |||||||
seq2  TTTTTGGCTCTGTGACTTCCTTGTGCCCCTCGGGGCAAATATCCTACATT  200

seq1  TTTATTCTATTTTCTGATAATTTCATCAAGCTGAATTTATCTTAACTACA  250
      || | | |   ||||||||||||  |||   |||||||||||||||||| 
seq2  TTGAATGTGAGTTCTGATAATTTGTTCACTGTGAATTTATCTTAACTACG  250

seq1  AAAAATGGTATTTATTTTCTCTAAATGTCTTTATATTTTTTAAAAAAATT  300
      |   |||| ||| |||||||| || |||||||  ||  || |||  || |
seq2  ACTGATGGCATTAATTTTCTCCAACTGTCTTTGAATGATTGAAAGGAACT  300

seq1  CTATTGGTTTATTCCCATTGTATACTTTTATTTGCATCCTACTGATAACA  350
      |  | ||||||||||  |||| | |||| || |||||||  |||||||||
seq2  CCCTCGGTTTATTCCTTTTGTCTCCTTTAATATGCATCCCTCTGATAACA  350

seq1  CTTTATTCTGATACATGATTAC-ACTGTCAATTTTTTGTTTGTTTGTTTG  399
      |  | ||||   | |||||||| | ||||  ||||  || || | ||| |
seq2  CGGTTTTCTCCCATATGATTACAATTGTCTTTTTTGCGTATGCTAGTTCG  400

seq1  TTTTGGGTTTTGTTTTCTTTTCTTTACTGTGTAGACCTTCATTACATTAT  449
      |  |||||  || |  || | ||| || ||||  ||| |  |||| ||  
seq2  TGCTGGGTACTGGTACCTATACTTCACGGTGTCTACCCTGGTTACTTTCC  450

seq1  TGAAAAATGTACCCTCATATTTAGCCATTTGTTACTTCTAACTTATATTA  499
      | || || | |||||||  | |  ||||     ||||||||   ||||| 
seq2  TCAAGAAGGGACCCTCAACTCTGACCATAACAGACTTCTAAAGAATATTT  500

seq1  CCTTTCTGAGGTAGTATCTTTATTTTTCAGTTTTGTTACATTTTGTCTTG  549
        |||  || | ||||     |  | ||   |  | |||  | |||| ||
seq2  GTTTTGAGACGCAGTAGAAGGACCTATCCCATCCGATACGATCTGTCATG  550

seq1  AACTATTTTAATTGAGAATCAAGAAGTCTATTCATCCTCATATATTTCTC  599
       |   || |  ||||| || | ||| ||||||||||||||||||||||||
seq2  GAGATTTGTGGTTGAGGATGATGAACTCTATTCATCCTCATATATTTCTC  600

seq1  AAGAAACTCCAACTTTTCTTGTGGCTGTCTTGCTTTATGTAATGACTATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTCCAACTTTTCTTGTGGCTGTCTTGCTTTATGTAATGACTATT  650

seq1  TATGAAGGTTTCCTTCTAGATTTAAAGGGCACTGGTGACCTCACCTTGTG  699
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGGTCTCCTTCTAGATTTAAAGGGCACTGGTGACCTCACCTTGTG  700

seq1  ACTTTGTCTGTAGCTCTCAGGCTTCCTTCTTCCTTTTATTTCCATTGAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTCTGTAGCTCTCAGGCTTCCTTCTTCCTTTTATTTCCATTGAAT  750

seq1  TATTCAATACTTAATGTACCTCTAAGTCATAGGTAAGTACACCTACTCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAATACTTAATGTACCTCTAAGTCATAGGTAAGTACACCTACTCTT  800

seq1  TTCTCTGTGTCTGTTTCTTAGAGTCTTAAATTTTCTCTTCTGTCTATTAT  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTCTCTGTGTCTGTTTCTTAGAGTCTTAAATTTTCTCTTCTGTCTA-TAT  849

seq1  AATTTTAGCTAGTTTTCTTTGCGTACTTAAAGTTCTATTTTAAAATAATT  899
       ||||||||||||||||||||||||||| ||| |||| ||| ||||||||
seq2  -ATTTTAGCTAGTTTTCTTTGCGTACTTCAAG-TCTAGTTT-AAATAATT  896

seq1  TTAGTTTAAGAATAACAAACTAAATCAAACAAACAAGCAAACAACATGTG  949
      |||||||||| |||   |||| |||||||||||||  ||||| |||||||
seq2  TTAGTTTAAG-ATA--CAACT-AATCAAACAAACAGCCAAAC-ACATGTG  941

seq1  TGTATAAGC-CCCACAAAGATAAGACATG-ATGTCTATTTACATCTTGAG  997
      ||||||||| ||||| ||||| |||| || ||||||| ||||||||||||
seq2  TGTATAAGCTCCCAC-AAGAT-AGACTTGAATGTCTA-TTACATCTTGAG  988

seq1  GTTGCACAAGAGAACAAACACCCACCAAAAGACATATAAGTGGGGACTTG  1047
      |||||   ||||||||   |||||  | | |||   ||||| ||||||||
seq2  GTTGCCATAGAGAACA---ACCCA--ACATGAC--TTAAGT-GGGACTTG  1030

seq1  GTCAACTGTTA  1058
      ||| |||||||
seq2  GTC-ACTGTTA  1040