BAC Information

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BAC

Clone NameB6Ng01-330C11
Chromosome6 (Build37)
Map Location 143,737,190 - 143,933,485
singlet/doubletdoublet
Overlap geneSox5
Upstream geneGm766, EG665037, St8sia1, LOC665056, 5730419I09Rik, Etnk1, D6Ertd474e
Downstream gene4933425H06Rik, EG665149
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330C11.bB6Ng01-330C11.g
ACCGA116913GA116914
length721813
definitionB6Ng01-330C11.b B6Ng01-330C11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,737,190 - 143,737,910)(143,932,677 - 143,933,485)
sequence
gaattccaggcaggcttgggccacatatagaaacactttcccataaaact
gcacaaagtaaatactgaaataaaaagcttatttttagcaaagaacagat
actcacaaagctagaactggtaagtagaattaaggcataggaaataatat
ttatggtagaattctatagcaaaataatctcttaggcctatttgtcagtg
tgactgtaagactccagggagccttagcttactggggaccccctgagtga
accacgtggagccaggatcgatgcaaaaagcaagaggaatttattgttcc
agtgcactggggtcctcctagacccaaaggagaggcagtgacccccagga
cccgttcagtgagttttttatatggtttccaggggcagaacagaacatca
gcaactaggcacaatatgattggcagaacagtgcaccctttaaactgatt
ggtctttagggaatgaggtgacaaggacttcccttgtctgaaagtgagca
atggtcagccctgggggatgtgttcccacccacaggtctgttcctgccct
gtggtctgagaaatgctaattagtctctcccttctggagaggttagtgtt
tcatgaccttcccaaagttcctatgctgaccttttcattaccctctcaga
tatgtaaaaataatcttcttttaagttcaacttcacttttttactgactg
aaataagtgagcatgtgtgtg

gaattcaccctatcattttgcctgaggtacaggcaggaagctggcgggaa
ggtgtacatcctgaaagaggcgtgtgcaaataaataagttaaaatagtgg
aattcaccctatcaggtgtctgaacacccaaagctcaaaatagtattaat
taatgaattaacaccttctggaagcagcaggatggagaggggagtgtgtg
ctgggatgaagggtgtcagccagagccactgaggagtcggttcagcagtg
cccaatggccttgtcatttaaagcctgctccatggtagcacaccataaag
tccttgcagcagcttggagatctaaaactgccccatgttggccactgtag
ttggacctgaaggaaagtgcacagcccttcttgtggaagaggaaagaaca
cactgaccagaaacagtagagaatgggcttcaaatggcccgaagcatctc
tcaaaactgaaaacaggagaagctaggtctagttattattgttgttgtta
ttgttattattaatttatcattttatttatttccatttcaaatatcccct
tcccagtctcctctccacgaacccccccatctcatccccctcctcccctt
tgcctctaaagaaggtgctcccccacccactcctgcctcacccctctatt
tattcccctatatatatatatatcaagtctccacggcactgagtgtctcc
cctcctattgatgccagataaggccatcccctgctacatatgcagctgga
gccatggacccacccatgtgtactcttcggttggtgggtttcgtccctgg
gagctctggctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_143737190_143737910
seq2: B6Ng01-330C11.b_50_770

seq1  GAATTCCAGGCAGGCTTGGGCCACATATAGAAACACTTTCCCATAAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCAGGCTTGGGCCACATATAGAAACACTTTCCCATAAAACT  50

seq1  GCACAAAGTAAATACTGAAATAAAAAGCTTATTTTTAGCAAAGAACAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAGTAAATACTGAAATAAAAAGCTTATTTTTAGCAAAGAACAGAT  100

seq1  ACTCACAAAGCTAGAACTGGTAAGTAGAATTAAGGCATAGGAAATAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAAAGCTAGAACTGGTAAGTAGAATTAAGGCATAGGAAATAATAT  150

seq1  TTATGGTAGAATTCTATAGCAAAATAATCTCTTAGGCCTATTTGTCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTAGAATTCTATAGCAAAATAATCTCTTAGGCCTATTTGTCAGTG  200

seq1  TGACTGTAAGACTCCAGGGAGCCTTAGCTTACTGGGGACCCCCTGAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTAAGACTCCAGGGAGCCTTAGCTTACTGGGGACCCCCTGAGTGA  250

seq1  ACCACGTGGAGCCAGGATCGATGCAAAAAGCAAGAGGAATTTATTGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGTGGAGCCAGGATCGATGCAAAAAGCAAGAGGAATTTATTGTTCC  300

seq1  AGTGCACTGGGGTCCTCCTAGACCCAAAGGAGAGGCAGTGACCCCCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCACTGGGGTCCTCCTAGACCCAAAGGAGAGGCAGTGACCCCCAGGA  350

seq1  CCCGTTCAGTGAGTTTTTTATATGGTTTCCAGGGGCAGAACAGAACATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTTCAGTGAGTTTTTTATATGGTTTCCAGGGGCAGAACAGAACATCA  400

seq1  GCAACTAGGCACAATATGATTGGCAGAACAGTGCACCCTTTAAACTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTAGGCACAATATGATTGGCAGAACAGTGCACCCTTTAAACTGATT  450

seq1  GGTCTTTAGGGAATGAGGTGACAAGGACTTCCCTTGTCTGAAAGTGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTAGGGAATGAGGTGACAAGGACTTCCCTTGTCTGAAAGTGAGCA  500

seq1  ATGGTCAGCCCTGGGGGATGTGTTCCCACCCACAGGTCTGTTCCTGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCAGCCCTGGGGGATGTGTTCCCACCCACAGGTCTGTTCCTGCCCT  550

seq1  GTGGTCTGAGAAATGCTAATTAGTCTCTCCCTTCTGGAGAGGTTAGTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTGAGAAATGCTAATTAGTCTCTCCCTTCTGGAGAGGTTAGTGTT  600

seq1  TCATGACCTTCCCAAAGTTCCTATGCTGACCTTTTCATTACCCTCTCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACCTTCCCAAAGTTCCTATGCTGACCTTTTCATTACCCTCTCAGA  650

seq1  TATGTAAAAATAATCTTCTTTTAAGTTCAACTTCACTTTTTTACTGACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAAAATAATCTTCTTTTAAGTTCAACTTCACTTTTTTACTGACTG  700

seq1  AAATAAGTGAGCATGTGTGTG  721
      |||||||||||||||||||||
seq2  AAATAAGTGAGCATGTGTGTG  721


seq1: chr6_143932677_143933485
seq2: B6Ng01-330C11.g_70_882 (reverse)

seq1  TCAGCCAGAGCTCCCAGGGACGAAA-CCACCAACCGAAGAGTACACATGG  49
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCAGCCAGAGCTCCCAGGGACGAAACCCACCAACCGAAGAGTACACATGG  50

seq1  GTGGGTCCATGGCTCCAGCTGCATATGTAGCAGGGGATGGCCTTATCTGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCCATGGCTCCAGCTGCATATGTAGCAGGGGATGGCCTTATCTGG  100

seq1  CATCAATAGGAGGGGAGACACTCAGTGCCGTGGAGACTTGATATATATAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATAGGAGGGGAGACACTCAGTGCCGTGGAGACTTGATATATATAT  150

seq1  ATATAGGGGAAT-AATAGAGGGGTGAGGCAGGAGTGGGTGGGGGAGCACC  198
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATATAGGGGAATAAATAGAGGGGTGAGGCAGGAGTGGGTGGGGGAGCACC  200

seq1  TTC-TTAGAGGCAAAGGGGAGGAGGGGGATGAGATGGGGGGGTTCGTGGA  247
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAGAGGCAAAGGGGAGGAGGGGGATGAGATGGGGGGGTTCGTGGA  250

seq1  GAGGAGACTGGGAAGGGGATATTTGAAATGGAAATAAATAAAATGATAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGACTGGGAAGGGGATATTTGAAATGGAAATAAATAAAATGATAAA  300

seq1  TTAATAATAACAATAACAACAACAATAATAACTAGACCTAGCTTCTCCTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATAACAATAACAACAACAATAATAACTAGACCTAGCTTCTCCTG  350

seq1  TTTTCAGTTTTGAGAGATGCTTCGGGCCATTTGAAGCCCATTCTCTACTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTTTTGAGAGATGCTTCGGGCCATTTGAAGCCCATTCTCTACTG  400

seq1  TTTCTGGTCAGTGTGTTCTTTCCTCTTCCACAAGAAGGGCTGTGCACTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGTCAGTGTGTTCTTTCCTCTTCCACAAGAAGGGCTGTGCACTTT  450

seq1  CCTTCAGGTCCAACTACAGTGGCCAACATGGGGCAGTTTTAGATCTCCAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGGTCCAACTACAGTGGCCAACATGGGGCAGTTTTAGATCTCCAA  500

seq1  GCTGCTGCAAGGACTTTATGGTGTGCTACCATGGAGCAGGCTTTAAATGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGCAAGGACTTTATGGTGTGCTACCATGGAGCAGGCTTTAAATGA  550

seq1  CAAGGCCATTGGGCACTGCTGAACCGACTCCTCAGTGGCTCTGGCTGACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCATTGGGCACTGCTGAACCGACTCCTCAGTGGCTCTGGCTGACA  600

seq1  CCCTTCATCCCAGCACACACTCCCCTCTCCATCCTGCTGCTTCCAGAAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCATCCCAGCACACACTCCCCTCTCCATCCTGCTGCTTCCAGAAGG  650

seq1  TGTTAATTCATTAATTAATACTATTTTGAGCTTTGGGTGTTCAGACACCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATTCATTAATTAATACTATTTTGAGCTTTGGGTGTTCAGACACCT  700

seq1  GATAGGGTGAATTCCACTATTTTAACTTATTTATTTGCACACGCCTCTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGTGAATTCCACTATTTTAACTTATTTATTTGCACACGCCTCTTT  750

seq1  CAGGATGTACACCTTCCCGCCAGCTTCCTGCCTGTACCTCAGGC-ACCTG  796
      |||||||||||||||||||||||||||||||||||||||||||| |  ||
seq2  CAGGATGTACACCTTCCCGCCAGCTTCCTGCCTGTACCTCAGGCAAAATG  800

seq1  ATAGGGTGAATTC  809
      |||||||||||||
seq2  ATAGGGTGAATTC  813


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