BAC Information

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BAC

Clone NameB6Ng01-331D21
Chromosome6 (Build37)
Map Location 68,504,521 - 68,505,581
singlet/doubletsinglet
Overlap geneIgk
Upstream geneIgkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99
Downstream geneIgkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331D21.bB6Ng01-331D21.g
ACCGA117667GA117668
length1,2031,072
definitionB6Ng01-331D21.b B6Ng01-331D21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
tttagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacaccactcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgagaatgtggagaaagaggaacactcctccactgttggta
ggattgcaagcttgtacaaccactctggaaatcagtctggctgtttctca
gaaaattggacatagtactttcagagaatcccgcaataccttttttgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagcctaatttataatagccagaacctggaaagaacccagat
gcccctcaacagaagaatggatacagaaaatgtggtatatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggaaggcatcatcctgagtgagataacccaatcacaaa
ggaactcacacattatgtactcattgataattggatattagcccagaaac
ttaggatacccaagatataagatacaatttgctaaatgcgtgaaactcaa
gaagaatgaaaaccaaagtgtggacactttgcccctacttagaatttgga
acaaaacacccatggaaggagttatagagacaaattttggagctgtgacg
aaaggatggaccttctagagattgccatatccggggatccagcccataat
cagcttccaaacgctgacaccattgcataaactagcaagattttgctgaa
agacccagatatacatgtctcttgtgagactatgctggggcctagcaaac
acagaagtgggatgctcacagtcagctattggatgtatcacagggccccc
aatggaggagctagagaaagtatccaaggagctaaaggggtctgcaactc
tatagtggaacaacattgtgaactaaccgtacctggagctcttgtctctt
attctgcatatgtattcaaaaagatggcctagttggacatcactggaagg
agtgccccactgggctggcaactttataatgcccagttacaaggatgcac
gctaactggaatggggtgggtaatgatacactgttgtggagtgcaatacg
tag
gaattctctgaacaaggagaaatcaaattgatttttacctggaaggctca
ttccactgaatttatttcatagtaggtaggtttgatacattagatacata
actactggtaaacaaataaaaccatgcttgcccttctccaccccccccca
aaaaaaacataaaacatagccagaggcaaacatttctaaaagagtacaga
gtagtcatatccttgagccatgtgaggagatggggaagggaaaagaaaaa
gaagccaaggcaatgaggttcagcagccaagaggcaaaagatgaaaagtt
gcaggtaaccaaaatgtctagattatatagggaagagcctctaagagaca
ggcagcacagtgggctggagaaatggtatagtgggtaggattatctcagc
aatactctgtaataggtagcgtctgagggatgctgggagaaccaggcggc
ttggtcaactgtgatgtgttaaatcgacatgtcagccatttgtcctattt
atgaaatttaatagtggaaaatttaggtaagaaaataagccagagcttac
atctatttcaatgtacttcttttatggattacagtataatcatgacagac
tgtcagaaactggtgatttatggataagactttcctaacattctttttca
gctccctttgactaagtaattattggaaaataaaaattaaaacaatattt
caaaagtctttacttctgtacttgctagttttgtgtgaacttgacacagc
tggagttatcacagagaaaggagcttcagttgaggaaatgcctccatgag
atacaactgtaaggcatttcctcaattagtgatcaagggggaaagccctt
tgtgggtgggaccgtctctgggctggccgacttgggttctataagagagc
cagctgagcaaaccagtggaagcaagccagttaaagaacatccctccacg
gcttctgcatcagctcctgctttctgacctgcttgagtttcagtctgact
ttcttgggaatgacagcagtattggagtgttaagctgaataaccctttcc
tcccaaacttgcttcttggtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_68504521_68505581
seq2: B6Ng01-331D21.g_79_1137 (reverse)

seq1  TGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTT-ACACTTC  49
      ||||||||||||||||| |||||||||||| ||||||||||| ||||| |
seq2  TGACCAAGAAGCAAGTTTGGGAGGAAAGGG-TTATTCAGCTTAACACTCC  49

seq1  CATACTGCTGTTCATCCCCAAAGGAAGTCAGGACTGGAACTCAAGCAGGT  99
       ||||||||| |||| ||| ||| |||||| ||||| |||||||||||||
seq2  AATACTGCTG-TCATTCCC-AAGAAAGTCA-GACTGAAACTCAAGCAGGT  96

seq1  CAGAAAGCAGGAGCTGATGCAGAAGCCGTGGAGGGATGTTCTTT-ACTGG  148
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAGAAAGCAGGAGCTGATGCAGAAGCCGTGGAGGGATGTTCTTTAACTGG  146

seq1  CTTGCTTCCACTGGTTTGCTCAGCTGGCTCTCTTATAGAACCCAAGTCGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCCACTGGTTTGCTCAGCTGGCTCTCTTATAGAACCCAAGTCGG  196

seq1  CCAGCCCAGAGACGGTCCCACCCACAAAGGGCTTTCCCCCTTGATCACTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCAGAGACGGTCCCACCCACAAAGGGCTTTCCCCCTTGATCACTA  246

seq1  ATTGAGGAAATGCCTTACAGTTGTATCTCATGGAGGCATTTCCTCAACTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGAAATGCCTTACAGTTGTATCTCATGGAGGCATTTCCTCAACTG  296

seq1  AAGCTCCTTTCTCTGTGATAACTCCAGCTGTGTCAAGTTCACACAAAACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCTTTCTCTGTGATAACTCCAGCTGTGTCAAGTTCACACAAAACT  346

seq1  AGCAAGTACAGAAGTAAAGACTTTTGAAATATTGTTTTAATTTTTATTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTACAGAAGTAAAGACTTTTGAAATATTGTTTTAATTTTTATTTT  396

seq1  CCAATAATTACTTAGTCAAAGGGAGCTGAAAAAGAATGTTAGGAAAGTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAATTACTTAGTCAAAGGGAGCTGAAAAAGAATGTTAGGAAAGTCT  446

seq1  TATCCATAAATCACCAGTTTCTGACAGTCTGTCATGATTATACTGTAATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATAAATCACCAGTTTCTGACAGTCTGTCATGATTATACTGTAATC  496

seq1  CATAAAAGAAGTACATTGAAATAGATGTAAGCTCTGGCTTATTTTCTTAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAGAAGTACATTGAAATAGATGTAAGCTCTGGCTTATTTTCTTAC  546

seq1  CTAAATTTTCCACTATTAAATTTCATAAATAGGACAAATGGCTGACATGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTTTCCACTATTAAATTTCATAAATAGGACAAATGGCTGACATGT  596

seq1  CGATTTAACACATCACAGTTGACCAAGCCGCCTGGTTCTCCCAGCATCCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTAACACATCACAGTTGACCAAGCCGCCTGGTTCTCCCAGCATCCC  646

seq1  TCAGACGCTACCTATTACAGAGTATTGCTGAGATAATCCTACCCACTATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACGCTACCTATTACAGAGTATTGCTGAGATAATCCTACCCACTATA  696

seq1  CCATTTCTCCAGCCCACTGTGCTGCCTGTCTCTTAGAGGCTCTTCCCTAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTCCAGCCCACTGTGCTGCCTGTCTCTTAGAGGCTCTTCCCTAT  746

seq1  ATAATCTAGACATTTTGGTTACCTGCAACTTTTCATCTTTTGCCTCTTGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTAGACATTTTGGTTACCTGCAACTTTTCATCTTTTGCCTCTTGG  796

seq1  CTGCTGAACCTCATTGCCTTGGCTTCTTTTTCTTTTCCCTTCCCCATCTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAACCTCATTGCCTTGGCTTCTTTTTCTTTTCCCTTCCCCATCTC  846

seq1  CTCACATGGCTCAAGGATATGACTACTCTGTACTCTTTTAGAAATGTTTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATGGCTCAAGGATATGACTACTCTGTACTCTTTTAGAAATGTTTG  896

seq1  CCTCTGGCTATGTTTTATGTTTTTTTTGGGGGGGGGTGGAGAAGGGCAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGCTATGTTTTATGTTTTTTTTGGGGGGGGGTGGAGAAGGGCAAG  946

seq1  CATGGTTTTATTTGTTTACCAGTAGTTATGTATCTAATGTATCAAACCTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTTTATTTGTTTACCAGTAGTTATGTATCTAATGTATCAAACCTA  996

seq1  CCTACTATGAAATAAATTCAGTGGAATGAGCCTTCCAGGTAAAAATCAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTATGAAATAAATTCAGTGGAATGAGCCTTCCAGGTAAAAATCAAT  1046

seq1  TTGATTTCTCCTT  1061
      |||||||||||||
seq2  TTGATTTCTCCTT  1059