BAC Information

Click to search

BAC

Clone NameB6Ng01-331M03
Chromosome6 (Build37)
Map Location 55,603,112 - 55,742,032
singlet/doubletdoublet
Overlap geneLOC100042219, Neurod6, LOC100041339
Upstream geneLOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1
Downstream geneCcdc129, Gsbs, LOC100041357, Pde1c, EG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331M03.bB6Ng01-331M03.g
ACCGA118042GA118043
length1,0141,069
definitionB6Ng01-331M03.b B6Ng01-331M03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,603,112 - 55,604,025)(55,740,958 - 55,742,032)
sequence
gaattctaacatccggctgagagaataaacaccatgctttaaattggtca
gtgtggcaatgcagagggatgctggaggcttgcagatgagaccaatcttt
gctacactcatggctaatttgatatcctgctcgccatgatctcccatcag
tgtaacactgtgtgacctgccagtgtctcagccacagtgtgaccaggcta
aagacaaagcaatttgttcagtcaaacttatttggttcctatctgactcg
ggttttatagaaactcatcttggcttgatccaacctcattttatcacagt
ctagagagaaggtgtttgattaaaggtgacatggatcatgtatccagccc
taatggagtcaagccctggtactgggcttattgttagtatttaaactcta
ttatttcatggatcttgtattagtcagggttctctagagtcacagaactt
acggatagtctctagttagtaaaggaatttattgataacttacagtcggc
agcccaattccttacaattgttcagtcgcagctgtgaatggaaatccaag
gatctagcagttactcagtctcacacggcaagcaggcgaaggagcaagag
caagagctagactcccttcttccaatgtccttatattgtctccagcagaa
ggtgtagctcagattaaaggtgtgttccgccacacctttaatcccagatg
gaaggtgtagcccagattaaaggtgtgttccttaaactcggagattcaat
cttctggaatccatagccactatggctcaagatcttcaaaccaagatcca
gataaggatctccaagcctccagataaagggtcactggtgagccttccaa
ttccggactgtagttcattccaaatattgtcaagttgacaaccaggaata
gccactacaatccaccccttgtcaacttgacacaaataatatctcatgtt
cacatgaaacaataacaaggtgtaaatacgcctaacatgatataactatc
cctcgtaaaatcgc
gaattccaggaccaaaagataaggagaaaataaaaggaagcagggtgtgt
aagcaaagagcacctttgtcctactctaaggcagatgggtccctgtgggc
acaccctcccccatctttgatggcagagctaaaagatgcaaatggctgtg
gcgtgtaaaacccccaacaacagagtctttgttctctaggaagacttaca
agaaactgttaaacagggggattctacaaaaagtagagaagacagagaaa
gcagtcagaagcctgtatccttttatcatgcttgcaagtgttttcttctt
ctttctctgcacaggcactggtatttaaagaaaaaaaaaaaaaaaaggaa
ggtatttttaattgataaattctgggaagcattccattgaaaagatttta
tccttagagaagctaattacagaagatgaatcatgacagcaagtttaaca
gattagataaagtgaaagaagcaataacctgtgtatgttgaatatcttca
tattaaatcttccctcccatgcccctggactgagagtgaactcagaaaaa
ctcagaagaccctgatgctgtaggaggggagttccaggaaggacacagta
cagcgccttttgtcccagtgtagtgatggagggcatccttgcttcatgga
gggtatcctttctccaggaccaacaagtagaaacttacccccactcccca
tcactaccattagaaacactgcaagcctgagggtatagttagggatggag
cactttcccatgtgccccagcctggggcagaacagagagaaagagagaag
aggagggagcacaggagagtaaagggaggggaaaggaagcaaaagtaggg
tagaagagggaggcagacacttctgtttaacttggtgagagctcatttta
taggagtgtgaccttaaatttagagaggaatgaaacaagcccttttcaag
ggtctggggtctggtccaggatgacatactgggaatgatggtctttggct
agtggttcaagaaatctataacatagcacatccatctcacacaccacaca
cgatgtgtgtttatatcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_55603112_55604025
seq2: B6Ng01-331M03.b_48_962

seq1  GAATTCTAACATCCGGCTGAGAGAATAAACACCATGCTTTAAATTGGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACATCCGGCTGAGAGAATAAACACCATGCTTTAAATTGGTCA  50

seq1  GTGTGGCAATGCAGAGGGATGCTGGAGGCTTGCAGATGAGACCAATCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCAATGCAGAGGGATGCTGGAGGCTTGCAGATGAGACCAATCTTT  100

seq1  GCTACACTCATGGCTAATTTGATATCCTGCTCGCCATGATCTCCCATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACTCATGGCTAATTTGATATCCTGCTCGCCATGATCTCCCATCAG  150

seq1  TGTAACACTGTGTGACCTGCCAGTGTCTCAGCCACAGTGTGACCAGGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACACTGTGTGACCTGCCAGTGTCTCAGCCACAGTGTGACCAGGCTA  200

seq1  AAGACAAAGCAATTTGTTCAGTCAAACTTATTTGGTTCCTATCTGACTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAAGCAATTTGTTCAGTCAAACTTATTTGGTTCCTATCTGACTCG  250

seq1  GGTTTTATAGAAACTCATCTTGGCTTGATCCAACCTCATTTTATCACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATAGAAACTCATCTTGGCTTGATCCAACCTCATTTTATCACAGT  300

seq1  CTAGAGAGAAGGTGTTTGATTAAAGGTGACATGGATCATGTATCCAGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAGAAGGTGTTTGATTAAAGGTGACATGGATCATGTATCCAGCCC  350

seq1  TAATGGAGTCAAGCCCTGGTACTGGGCTTATTGTTAGTATTTAAACTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGAGTCAAGCCCTGGTACTGGGCTTATTGTTAGTATTTAAACTCTA  400

seq1  TTATTTCATGGATCTTGTATTAGTCAGGGTTCTCTAGAGTCACAGAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCATGGATCTTGTATTAGTCAGGGTTCTCTAGAGTCACAGAACTT  450

seq1  ACGGATAGTCTCTAGTTAGTAAAGGAATTTATTGATAACTTACAGTCGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGATAGTCTCTAGTTAGTAAAGGAATTTATTGATAACTTACAGTCGGC  500

seq1  AGCCCAATTCCTTACAATTGTTCAGTCGCAGCTGTGAATGGAAATCCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAATTCCTTACAATTGTTCAGTCGCAGCTGTGAATGGAAATCCAAG  550

seq1  GATCTAGCAGTTACTCAGTCTCACACGGCAAGCAGGCGAAGGAGCAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGCAGTTACTCAGTCTCACACGGCAAGCAGGCGAAGGAGCAAGAG  600

seq1  CAAGAGCTAGACTCCCTTCTTCCAATGTCCTTATATTGTCTCCAGCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCTAGACTCCCTTCTTCCAATGTCCTTATATTGTCTCCAGCAGAA  650

seq1  GGTGTAGCTCAGATTAAAGGTGTGTTCCGCCACACCTTTAATCCCAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAGCTCAGATTAAAGGTGTGTTCCGCCACACCTTTAATCCCAGATG  700

seq1  GAAGGTGTAGCCCAGATTAAAGGTGTGTTCCTTAAACTCGGAGATTCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGTAGCCCAGATTAAAGGTGTGTTCCTTAAACTCGGAGATTCAAT  750

seq1  CTTCTGGAATCCATAGCCACTATGGCTCAAGATCTTCAAACCAAGATCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGAATCCATAGCCACTATGGCTCAAGATCTTCAAACCAAGATCCA  800

seq1  GATAAGGATCTCCAAGCCTCCAGAT-AAGGGTCACTGGTGAGCCTTCCAA  849
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GATAAGGATCTCCAAGCCTCCAGATAAAGGGTCACTGGTGAGCCTTCCAA  850

seq1  TTCCGGACTGTAGTTCATTCCAAATATTGTCAAGTTGACAACCAGGAATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGGACTGTAGTTCATTCCAAATATTGTCAAGTTGACAACCAGGAATA  900

seq1  GCCACTACAATCCAC  914
      |||||||||||||||
seq2  GCCACTACAATCCAC  915

seq1: chr6_55740958_55742032
seq2: B6Ng01-331M03.g_68_1136 (reverse)

seq1  CTGATATAAACACACCCTTCTGTGTGTGTGTGTGTGTG-TGTGTGTGCTA  49
      ||||||||||||||  | || ||||||| ||||||| | ||  |||||||
seq2  CTGATATAAACACA--CATC-GTGTGTG-GTGTGTGAGATGGATGTGCTA  46

seq1  TTGTATAGATTTTTCTTGAACAACTAG-CAAAGACCATCATTTCCCAGTA  98
      |  ||||||  |||||||||| ||||| |||||||||||| |||||||||
seq2  TGTTATAGA--TTTCTTGAACCACTAGCCAAAGACCATCA-TTCCCAGTA  93

seq1  TTGTCATCCTGGACCAGGACCCCAGACCCTTGAAAA-GGCTTGTTTCATT  147
       ||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  -TGTCATCCTGGACCA-GACCCCAGACCCTTGAAAAGGGCTTGTTTCATT  141

seq1  CCTCTCTAAATTTAAGGTCACACTCCTATAAAATGAGCTCTCACCAAGTT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTAAATTTAAGGTCACACTCCTATAAAATGAGCTCTCACCAAGTT  191

seq1  AAACAGAAGTGTCTGCCTCCCTCTTCTACCCTACTTTTGCTTCCTTTCCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAGTGTCTGCCTCCCTCTTCTACCCTACTTTTGCTTCCTTTCCC  241

seq1  CTCCCTTTACTCTCCTGTGCTCCCTCCTCTTCTCTCTTTCTCTCTGTTCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTACTCTCCTGTGCTCCCTCCTCTTCTCTCTTTCTCTCTGTTCT  291

seq1  GCCCCAGGCTGGGGCACATGGGAAAGTGCTCCATCCCTAACTATACCCTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGGCTGGGGCACATGGGAAAGTGCTCCATCCCTAACTATACCCTC  341

seq1  AGGCTTGCAGTGTTTCTAATGGTAGTGATGGGGAGTGGGGGTAAGTTTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGCAGTGTTTCTAATGGTAGTGATGGGGAGTGGGGGTAAGTTTCT  391

seq1  ACTTGTTGGTCCTGGAGAAAGGATACCCTCCATGAAGCAAGGATGCCCTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTGGTCCTGGAGAAAGGATACCCTCCATGAAGCAAGGATGCCCTC  441

seq1  CATCACTACACTGGGACAAAAGGCGCTGTACTGTGTCCTTCCTGGAACTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTACACTGGGACAAAAGGCGCTGTACTGTGTCCTTCCTGGAACTC  491

seq1  CCCTCCTACAGCATCAGGGTCTTCTGAGTTTTTCTGAGTTCACTCTCAGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTACAGCATCAGGGTCTTCTGAGTTTTTCTGAGTTCACTCTCAGT  541

seq1  CCAGGGGCATGGGAGGGAAGATTTAATATGAAGATATTCAACATACACAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGCATGGGAGGGAAGATTTAATATGAAGATATTCAACATACACAG  591

seq1  GTTATTGCTTCTTTCACTTTATCTAATCTGTTAAACTTGCTGTCATGATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGCTTCTTTCACTTTATCTAATCTGTTAAACTTGCTGTCATGATT  641

seq1  CATCTTCTGTAATTAGCTTCTCTAAGGATAAAATCTTTTCAATGGAATGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCTGTAATTAGCTTCTCTAAGGATAAAATCTTTTCAATGGAATGC  691

seq1  TTCCCAGAATTTATCAATTAAAAATACCTTCCTTTTTTTTTTTTTTTTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGAATTTATCAATTAAAAATACCTTCCTTTTTTTTTTTTTTTTCT  741

seq1  TTAAATACCAGTGCCTGTGCAGAGAAAGAAGAAGAAAACACTTGCAAGCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATACCAGTGCCTGTGCAGAGAAAGAAGAAGAAAACACTTGCAAGCA  791

seq1  TGATAAAAGGATACAGGCTTCTGACTGCTTTCTCTGTCTTCTCTACTTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAAGGATACAGGCTTCTGACTGCTTTCTCTGTCTTCTCTACTTTT  841

seq1  TGTAGAATCCCCCTGTTTAACAGTTTCTTGTAAGTCTTCCTAGAGAACAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAATCCCCCTGTTTAACAGTTTCTTGTAAGTCTTCCTAGAGAACAA  891

seq1  AGACTCTGTTGTTGGGGGTTTTACACGCCACAGCCATTTGCATCTTTTAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTGTTGTTGGGGGTTTTACACGCCACAGCCATTTGCATCTTTTAG  941

seq1  CTCTGCCATCAAAGATGGGGGAGGGTGTGCCCACAGGGACCCATCTGCCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCATCAAAGATGGGGGAGGGTGTGCCCACAGGGACCCATCTGCCT  991

seq1  TAGAGTAGGACAAAGGTGCTCTTTGCTTACACACCCTGCTTCCTTTTATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTAGGACAAAGGTGCTCTTTGCTTACACACCCTGCTTCCTTTTATT  1041

seq1  TTCTCCTTATCTTTTGGTCCTGGAATTC  1075
      ||||||||||||||||||||||||||||
seq2  TTCTCCTTATCTTTTGGTCCTGGAATTC  1069