BAC Information

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BAC

Clone NameB6Ng01-332B17
Chromosome6 (Build37)
Map Location 80,543,415 - 80,673,559
singlet/doubletdoublet
Overlap geneLOC100043390
Upstream geneLOC100043392, Lrrtm4
Downstream geneLOC100042991
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332B17.bB6Ng01-332B17.g
ACCGA118304GA118305
length1,226796
definitionB6Ng01-332B17.b B6Ng01-332B17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,543,415 - 80,544,641)(80,672,764 - 80,673,559)
sequence
gaattcagctccagaaggcacaatttaaaaagagggtgagcttattcatc
agtaagcctctgacatgtcaattacattaacacaaaggatatagtgataa
aggacaaaaataatctcaatattaatacattttaatacagttatatactt
tgattttttataaatctgaatatttggttaaatattaacattgataaagg
agacagtaataagcctcacttaaactaactctggcaatttgatctaattt
tgatctaattttctggctccttcttattctctggcttcaactacctaggc
tgacctgctctgaactcatgaataaacacaactccactgcactccctgca
atgactcccatcgaactgactctgcactacctcaggtagcttctccttct
ccctgttctcctgaaagttgggcatattgtatctctgactcattctgtcc
aatctttctctgatttgacactttgtctgcccctcaattagaaatcacat
tcatatatgtctgcttctctctacaaaataattacaccttaatggtgtat
actaaggacacgtctgtatttctgccagagggattaaaggtgtatggccc
atctgcattccaggtggatcatatctttggaagtgatcgattgccagagt
agccacattgctactacattaaatgtggattaaaatttctctacattttg
ggatatagatttttttttattgaaacacttcatttttaacaaaaaagggt
aactgaggattaagatgtcttcattgtgtgaaattattggttacattgaa
gctttgagtataccttacccagtgttttaccaaagcaaataattctacct
aaagatccaaagaagaaatgacataatgaaattctggaagatcacctaag
gcagatattcctcgtaaaatattctttacattgtttgcattggcagagac
aaagggaactgttttgttcttgatgcataaatatgttggtgagctgatag
acttgaaaaactttacttcctatactttcccaaagccattctaatagcaa
cagagaaattcaattataagaaaaggatgcaccacaagactttcatattt
ttgtagcatctactccattgccagaatttccaatatatttaaataattta
ttgcttgctcgatttggatgaattatattatgtctataggttccgagaat
cagaaaagagaggtgtcatattctat

gaattcatcccttttctcactgtgttttaagataaactcttataaagaac
tgtgagtaaaataaagccttcctccctaaggttttgttttgttttgtttt
gttttttgtcatgttgtttcagctcaataataataaccctaacaaagaca
cagagcttggatagtctggctgggcaacaaaccacagggatctacctgcc
tttgcctttctagtgcttgattgcatatttttgccaccatactttttaag
gtttataaatctgtggatctgagggatatgtgcacttgtgagtacaagaa
cacacagaggagtccagaagaaggctttggatcccctggagctgtgaggc
acctgacatgggtggctggagctgaattaatcttctctgggaaaatagag
gcttcttaactgttgaatcatctcttcagacctcacaaccaagctttagt
gacacaagttctttgcaggaatgctgtcctgtctttactctggtgagact
gtcttcccaacacatctttgaagaggtccagacgaatatatatttcctga
atgcaatttccatatctctgcagcttttaattactaagttaatattagcc
catgagcatttaaaaaagttaccccctctggtatgcagtactttatgata
gtcatttattttctttaagtacccttacaatttaatttttcatcataata
tcttctctctctctttctctctctctctctctgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtcagagagagagagagagagagagacagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_80543415_80544641
seq2: B6Ng01-332B17.b_45_1270

seq1  GAATTCAGCTCCAGAAGGCACAATTTAAAAAGAGGGTGAGCTTATTCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTCCAGAAGGCACAATTTAAAAAGAGGGTGAGCTTATTCATC  50

seq1  AGTAAGCCTCTGACATGTCAATTACATTAACACAAAGGATATAGTGATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCCTCTGACATGTCAATTACATTAACACAAAGGATATAGTGATAA  100

seq1  AGGACAAAAATAATCTCAATATTAATACATTTTAATACAGTTATATACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAAAATAATCTCAATATTAATACATTTTAATACAGTTATATACTT  150

seq1  TGATTTTTTATAAATCTGAATATTTGGTTAAATATTAACATTGATAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTTATAAATCTGAATATTTGGTTAAATATTAACATTGATAAAGG  200

seq1  AGACAGTAATAAGCCTCACTTAAACTAACTCTGGCAATTTGATCTAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTAATAAGCCTCACTTAAACTAACTCTGGCAATTTGATCTAATTT  250

seq1  TGATCTAATTTTCTGGCTCCTTCTTATTCTCTGGCTTCAACTACCTAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTAATTTTCTGGCTCCTTCTTATTCTCTGGCTTCAACTACCTAGGC  300

seq1  TGACCTGCTCTGAACTCATGAATAAACACAACTCCACTGCACTCCCTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGCTCTGAACTCATGAATAAACACAACTCCACTGCACTCCCTGCA  350

seq1  ATGACTCCCATCGAACTGACTCTGCACTACCTCAGGTAGCTTCTCCTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCCCATCGAACTGACTCTGCACTACCTCAGGTAGCTTCTCCTTCT  400

seq1  CCCTGTTCTCCTGAAAGTTGGGCATATTGTATCTCTGACTCATTCTGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTCTCCTGAAAGTTGGGCATATTGTATCTCTGACTCATTCTGTCC  450

seq1  AATCTTTCTCTGATTTGACACTTTGTCTGCCCCTCAATTAGAAATCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTCTCTGATTTGACACTTTGTCTGCCCCTCAATTAGAAATCACAT  500

seq1  TCATATATGTCTGCTTCTCTCTACAAAATAATTACACCTTAATGGTGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATGTCTGCTTCTCTCTACAAAATAATTACACCTTAATGGTGTAT  550

seq1  ACTAAGGACACGTCTGTATTTCTGCCAGAGGGATTAAAGGTGTATGGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGACACGTCTGTATTTCTGCCAGAGGGATTAAAGGTGTATGGCCC  600

seq1  ATCTGCATTCCAGGTGGATCATATCTTTGGAAGTGATCGATTGCCAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCATTCCAGGTGGATCATATCTTTGGAAGTGATCGATTGCCAGAGT  650

seq1  AGCCACATTGCTACTACATTAAATGTGGATTAAAATTTCTCTACATTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACATTGCTACTACATTAAATGTGGATTAAAATTTCTCTACATTTTG  700

seq1  GGATATAGATTTTTTTTTATTGAAACACTTCATTTTTAACAAAAAAGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATAGATTTTTTTTTATTGAAACACTTCATTTTTAACAAAAAAGGGT  750

seq1  AACTGAGGATTAAGATGTCTTCATTGTGTGAAATTATTGGTTACATTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGGATTAAGATGTCTTCATTGTGTGAAATTATTGGTTACATTGAA  800

seq1  GCTTTGAGTATACCTTACCCAGTGTTTTACCAAAGCAAATAATTCTACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAGTATACCTTACCCAGTGTTTTACCAAAGCAAATAATTCTACCT  850

seq1  AAAGATCCAAAGAAGAAATGACATAATGAAATTCTGGAAGATCACCTAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCCAAAGAAGAAATGACATAATGAAATTCTGGAAGATCACCTAAG  900

seq1  GCAGATATTCCTCGTAAAATATTCTTTACATTGTTTGCATTGGCAGAGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATATTCCTCGTAAAATATTCTTTACATTGTTTGCATTGGCAGAGAC  950

seq1  AAAGGGAACTGTTTTGTTCTTGATGCATAAATATGTTGGTGAGCTGATAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAACTGTTTTGTTCTTGATGCATAAATATGTTGGTGAGCTGATAG  1000

seq1  ACTTGAAAAACTTTACTTCCTATACTTTCCCAAAGCCATTCT-ATAGCAA  1049
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACTTGAAAAACTTTACTTCCTATACTTTCCCAAAGCCATTCTAATAGCAA  1050

seq1  CAGAGAAATTCAATTATAAGAAAAGGATGCA-CACAAGACTTTCATATTT  1098
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAGAGAAATTCAATTATAAGAAAAGGATGCACCACAAGACTTTCATATTT  1100

seq1  TGTTAGCATCTACTCCCATTGCCCAAAGATTTCCAATTATATTAAAATAT  1148
      |  ||||||||||| ||||||||  |  |||||||| |||||| ||||| 
seq2  TTGTAGCATCTACT-CCATTGCC--AGAATTTCCAA-TATATTTAAATAA  1146

seq1  TTATTTGCTTGCTCTATTT-GATGATATATATTAATGTCTATAGTGTCAG  1197
      ||  |||||||||| |||| |||||  |||||| ||||||||||  || |
seq2  TTTATTGCTTGCTCGATTTGGATGAATTATATT-ATGTCTATAGGTTCCG  1195

seq1  AGAATCAGAAAAGAGA-GTGTTCAATTCTAT  1227
      |||||||||||||||| ||||   |||||||
seq2  AGAATCAGAAAAGAGAGGTGTCATATTCTAT  1226


seq1: chr6_80672764_80673559
seq2: B6Ng01-332B17.g_65_860 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTGACACACACACACACACACAC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCTCTCTCTCTCTCTCTCTCTCTGACACACACACACACACACAC  50

seq1  ACACACACACACACAGAGAGAGAGAGAGAGAAAGAGAGAGAGAAGATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACAGAGAGAGAGAGAGAGAAAGAGAGAGAGAAGATATT  100

seq1  ATGATGAAAAATTAAATTGTAAGGGTACTTAAAGAAAATAAATGACTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAAAAATTAAATTGTAAGGGTACTTAAAGAAAATAAATGACTATC  150

seq1  ATAAAGTACTGCATACCAGAGGGGGTAACTTTTTTAAATGCTCATGGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTACTGCATACCAGAGGGGGTAACTTTTTTAAATGCTCATGGGCT  200

seq1  AATATTAACTTAGTAATTAAAAGCTGCAGAGATATGGAAATTGCATTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAACTTAGTAATTAAAAGCTGCAGAGATATGGAAATTGCATTCAG  250

seq1  GAAATATATATTCGTCTGGACCTCTTCAAAGATGTGTTGGGAAGACAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATATATTCGTCTGGACCTCTTCAAAGATGTGTTGGGAAGACAGTC  300

seq1  TCACCAGAGTAAAGACAGGACAGCATTCCTGCAAAGAACTTGTGTCACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGAGTAAAGACAGGACAGCATTCCTGCAAAGAACTTGTGTCACTA  350

seq1  AAGCTTGGTTGTGAGGTCTGAAGAGATGATTCAACAGTTAAGAAGCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGGTTGTGAGGTCTGAAGAGATGATTCAACAGTTAAGAAGCCTCT  400

seq1  ATTTTCCCAGAGAAGATTAATTCAGCTCCAGCCACCCATGTCAGGTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCCAGAGAAGATTAATTCAGCTCCAGCCACCCATGTCAGGTGCCT  450

seq1  CACAGCTCCAGGGGATCCAAAGCCTTCTTCTGGACTCCTCTGTGTGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTCCAGGGGATCCAAAGCCTTCTTCTGGACTCCTCTGTGTGTTCT  500

seq1  TGTACTCACAAGTGCACATATCCCTCAGATCCACAGATTTATAAACCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCACAAGTGCACATATCCCTCAGATCCACAGATTTATAAACCTTA  550

seq1  AAAAGTATGGTGGCAAAAATATGCAATCAAGCACTAGAAAGGCAAAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATGGTGGCAAAAATATGCAATCAAGCACTAGAAAGGCAAAGGCA  600

seq1  GGTAGATCCCTGTGGTTTGTTGCCCAGCCAGACTATCCAAGCTCTGTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATCCCTGTGGTTTGTTGCCCAGCCAGACTATCCAAGCTCTGTGTC  650

seq1  TTTGTTAGGGTTATTATTATTGAGCTGAAACAACATGACAAAAAACAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAGGGTTATTATTATTGAGCTGAAACAACATGACAAAAAACAAAA  700

seq1  CAAAACAAAACAAAACCTTAGGGAGGAAGGCTTTATTTTACTCACAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACAAAACCTTAGGGAGGAAGGCTTTATTTTACTCACAGTTC  750

seq1  TTTATAAGAGTTTATCTTAAAACACAGTGAGAAAAGGGATGAATTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAGAGTTTATCTTAAAACACAGTGAGAAAAGGGATGAATTC  796


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