BAC Information

Click to search

BAC

Clone NameB6Ng01-332F18
Chromosome6 (Build37)
Map Location 37,624,133 - 37,743,511
singlet/doubletdoublet
Overlap geneYbx1-ps2
Upstream genePtn, LOC100039514, Dgki, EG665024, Creb3l2, Akr1d1, LOC665046
Downstream geneLOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332F18.bB6Ng01-332F18.g
ACCGA118483GA118484
length1,079996
definitionB6Ng01-332F18.b B6Ng01-332F18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,742,315 - 37,743,511)(37,624,133 - 37,625,021)
sequence
gaattcaaggctagcctggtctactaattgagttccagaaaagccagatc
taagaagagaaaccttatctcaaaaaacatcaaacaacaaacaaaacaac
cacataaaaatagtaaacaaacaaacaaaccaagcagcagacagctaaaa
aacacactaaattctggatttccctctcatggtctcaatgattgatggag
cttgtaatctgtgacaatcaatttttatatatatatatatatatataaaa
tgaaaatgaataacatgtcaagaagtctgcattgtctgaaggagagattg
catttcatatccaacacttgaataaaattcagagagcttgtagaaaaaaa
gcttgataagaatccagcttcttgttgggcatggtggcgcatgcctttaa
tcccagcactcgggaggcagaggcaggcggatttctgagtttgaggccag
cctggtctacaaagtgagttccaggacagccaaggctatacagagaaacc
ttgtgttgaaaaaccaaaagccaaaagccaaaagccaaaaaccaaaaacc
aaaaaccaaaaaccaaaaaccaaaaatcaaaaatcaaaaaccaaaaacca
aaaaaaaaaaaaaaaaaaaaaaaaaaaattcagcctctttacaaccatta
agtcaaaggtttgtatatcgtgcttactatgaccaaaggatgagagaagt
ggaggaggaggatcaggaggatgtcaatcatctagttattctacagaatc
atgataaatccataatgtttcaaaactagcagaatcattagccaagataa
caaaacaaacaccaacactaccacatgtcttagttagggctttactgctg
tgagaagacaccatgaccaatgcaactcttatatggacaacatttaattg
gagctggcttacaggttcagaggttcagttaattatcataaaggcaggag
ccacagcaaatccagcagacatgtgcagagagctgaagagtctacatctt
catctgacgctgctagtgagacttacttcagtctagatagtgtgggagcc
attagccaacacatgtctgatctctgatg
gaattcactctgtagaccatgctggccttaaactcacagagaccaacttg
ccttggcctcccaagcattgggattaaagacatgtgctaccatgaccagc
gcaatttaaagaaacttttaatgaaaggggggaggggagggcatagtagg
cttcagactagggtgaggcagatgaatggaaaaacaaaagaagtcttctg
gagtctatttgagtctaaactatgattgctctaaagtattattgaaagga
aggtatttattttaggaagagtacatccagaggcatctagaagagtctaa
gccagaaatagaatttagtgtagtgatcatgaccagcagactggactgga
ccataagagaagggagagagggggagactcaaagaggaagacaaagaagt
tgaacagtaaaagtggggcttaatgggcttaatcttagcaagagcttgga
agactagtgctgagagaaatgtgaactatggaggcccagatcaagtagtt
ttatgggagaacagtattagctattgtactattgtgatattctggcaaag
aatgtggcggctttctgcccttgttctaagaatgtgcctgaggctacact
caagagtttggaactaatttcattggcagaggagatctcaagtcagccta
atattgactgtgtcttgtgattattagtgatcattcttatgtagatctac
agtgaaaaagaccaagcagggcaaaaagaaatacaatgctgtacagtttt
gaagaaaaaagagcaccaggaaatttaagttagggcccagtcttatgtga
agaaggtgagaggatggtcgttggtggtgatggcccatgctttaaaaccc
agcacggggagacagggacaggcagatctctgagtttgagtccagccagg
tctaaagcaagttccaagagcaaccagggctacaaagagaaaccctatct
caagaaggaaaggggatggtatggtgtcctccaggcaagatctcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_37742315_37743511
seq2: B6Ng01-332F18.b_45_1123 (reverse)

seq1  CATCAGAGATGACTTAGGGCTGGAACATTCTGTGGTTGTTCTCGGAATCG  50
                                                        
seq2  --------------------------------------------------  0

seq1  GTGTGTCGGTGGCCCGCTTTTGACCCCCTTTTCTTCTCGGGAGGAGAGGC  100
                                                        
seq2  --------------------------------------------------  0

seq1  CCAATTCAGAGATCAGGACAATTGTGTTGGCCTAATGGCTCCCAACACTT  150
       ||  |||||||||| ||||  |||||||| |||||||||||| |||| |
seq2  -CA--TCAGAGATCA-GACA--TGTGTTGG-CTAATGGCTCCC-ACAC-T  41

seq1  ATCCTAGACTGAAAGTAAGTCTTCCACTAGCAGCCGTCAGATGAAGATGT  200
      || |||||||| ||||||||||  ||||||||| ||||||||||||||||
seq2  AT-CTAGACTG-AAGTAAGTCT--CACTAGCAG-CGTCAGATGAAGATGT  86

seq1  AGAACTC-TCAGCTCCTCCTGCACCATGTCTGCCTGGATTTTGCTGT-GC  248
      || |||| |||||||   ||||| |||||||| ||||| |||||||| ||
seq2  AG-ACTCTTCAGCTC--TCTGCA-CATGTCTG-CTGGA-TTTGCTGTGGC  130

seq1  TCCTGCCTTTATGATAATTAACTGAACCTCTGAACCTGTAAGCCAGCTCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTTTATGATAATTAACTGAACCTCTGAACCTGTAAGCCAGCTCC  180

seq1  AATTAAATGTTGTCCATATAAGAGTTGCATTGGTCATGGTGTCTTCTCAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATGTTGTCCATATAAGAGTTGCATTGGTCATGGTGTCTTCTCAC  230

seq1  AGCAGTAAAGCCCTAACTAAGACATGTGGTAGTGTTGGTGTTTGTTTTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAAAGCCCTAACTAAGACATGTGGTAGTGTTGGTGTTTGTTTTGT  280

seq1  TATCTTGGCTAATGATTCTGCTAGTTTTGAAACATTATGGATTTATCATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGGCTAATGATTCTGCTAGTTTTGAAACATTATGGATTTATCATG  330

seq1  ATTCTGTAGAATAACTAGATGATTGACATCCTCCTGATCCTCCTCCTCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTAGAATAACTAGATGATTGACATCCTCCTGATCCTCCTCCTCCA  380

seq1  CTTCTCTCATCCTTTGGTCATAGTAAGCACGATATACAAACCTTTGACTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCATCCTTTGGTCATAGTAAGCACGATATACAAACCTTTGACTT  430

seq1  AATGGTTGTAAAGAGGCTGAATTTTTTTTTTTTTTTTTTTTTTTTTTTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTGTAAAGAGGCTGAATTTTTTTTTTTTTTTTTTTTTTTTTTTTT  480

seq1  GGTTTTTGGTTTTTGATTTTTGATTTTTGGTTTTTGGTTTTTGGTTTTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTGGTTTTTGATTTTTGATTTTTGGTTTTTGGTTTTTGGTTTTTG  530

seq1  GTTTTTGGTTTTTGGCTTTTGGCTTTTGGCTTTTGGTTTTTCAACACAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGGTTTTTGGCTTTTGGCTTTTGGCTTTTGGTTTTTCAACACAAG  580

seq1  GTTTCTCTGTATAGCCTTGGCTGTCCTGGAACTCACTTTGTAGACCAGGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGTATAGCCTTGGCTGTCCTGGAACTCACTTTGTAGACCAGGC  630

seq1  TGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGAT  680

seq1  TAAAGGCATGCGCCACCATGCCCAACAAGAAGCTGGATTCTTATCAAGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCATGCGCCACCATGCCCAACAAGAAGCTGGATTCTTATCAAGCT  730

seq1  TTTTTTCTACAAGCTCTCTGAATTTTATTCAAGTGTTGGATATGAAATGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTACAAGCTCTCTGAATTTTATTCAAGTGTTGGATATGAAATGC  780

seq1  AATCTCTCCTTCAGACAATGCAGACTTCTTGACATGTTATTCATTTTCAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTCCTTCAGACAATGCAGACTTCTTGACATGTTATTCATTTTCAT  830

seq1  TTTATATATATATATATATATATAAAAATTGATTGTCACAGATTACAAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATATATATATATATATATAAAAATTGATTGTCACAGATTACAAGC  880

seq1  TCCATCAATCATTGAGACCATGAGAGGGAAATCCAGAATTTAGTGTGTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAATCATTGAGACCATGAGAGGGAAATCCAGAATTTAGTGTGTTT  930

seq1  TTTAGCTGTCTGCTGCTTGGTTTGTTTGTTTGTTTACTATTTTTATGTGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTGTCTGCTGCTTGGTTTGTTTGTTTGTTTACTATTTTTATGTGG  980

seq1  TTGTTTTGTTTGTTGTTTGATGTTTTTTGAGATAAGGTTTCTCTTCTTAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTGTTGTTTGATGTTTTTTGAGATAAGGTTTCTCTTCTTAG  1030

seq1  ATCTGGCTTTTCTGGAACTCAATTAGTAGACCAGGCTAGCCTTGAATTC  1197
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCTTTTCTGGAACTCAATTAGTAGACCAGGCTAGCCTTGAATTC  1079

seq1: chr6_37624133_37625021
seq2: B6Ng01-332F18.g_66_954

seq1  GAATTCACTCTGTAGACCATGCTGGCCTTAAACTCACAGAGACCAACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCATGCTGGCCTTAAACTCACAGAGACCAACTTG  50

seq1  CCTTGGCCTCCCAAGCATTGGGATTAAAGACATGTGCTACCATGACCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCCTCCCAAGCATTGGGATTAAAGACATGTGCTACCATGACCAGC  100

seq1  GCAATTTAAAGAAACTTTTAATGAAAGGGGGGAGGGGAGGGCATAGTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTAAAGAAACTTTTAATGAAAGGGGGGAGGGGAGGGCATAGTAGG  150

seq1  CTTCAGACTAGGGTGAGGCAGATGAATGGAAAAACAAAAGAAGTCTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGACTAGGGTGAGGCAGATGAATGGAAAAACAAAAGAAGTCTTCTG  200

seq1  GAGTCTATTTGAGTCTAAACTATGATTGCTCTAAAGTATTATTGAAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTATTTGAGTCTAAACTATGATTGCTCTAAAGTATTATTGAAAGGA  250

seq1  AGGTATTTATTTTAGGAAGAGTACATCCAGAGGCATCTAGAAGAGTCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTTATTTTAGGAAGAGTACATCCAGAGGCATCTAGAAGAGTCTAA  300

seq1  GCCAGAAATAGAATTTAGTGTAGTGATCATGACCAGCAGACTGGACTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAATAGAATTTAGTGTAGTGATCATGACCAGCAGACTGGACTGGA  350

seq1  CCATAAGAGAAGGGAGAGAGGGGGAGACTCAAAGAGGAAGACAAAGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGAGAAGGGAGAGAGGGGGAGACTCAAAGAGGAAGACAAAGAAGT  400

seq1  TGAACAGTAAAAGTGGGGCTTAATGGGCTTAATCTTAGCAAGAGCTTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGTAAAAGTGGGGCTTAATGGGCTTAATCTTAGCAAGAGCTTGGA  450

seq1  AGACTAGTGCTGAGAGAAATGTGAACTATGGAGGCCCAGATCAAGTAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGTGCTGAGAGAAATGTGAACTATGGAGGCCCAGATCAAGTAGTT  500

seq1  TTATGGGAGAACAGTATTAGCTATTGTACTATTGTGATATTCTGGCAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGAGAACAGTATTAGCTATTGTACTATTGTGATATTCTGGCAAAG  550

seq1  AATGTGGCGGCTTTCTGCCCTTGTTCTAAGAATGTGCCTGAGGCTACACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGCGGCTTTCTGCCCTTGTTCTAAGAATGTGCCTGAGGCTACACT  600

seq1  CAAGAGTTTGGAACTAATTTCATTGGCAGAGGAGATCTCAAGTCAGCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTTTGGAACTAATTTCATTGGCAGAGGAGATCTCAAGTCAGCCTA  650

seq1  ATATTGACTGTGTCTTGTGATTATTAGTGATCATTCTTATGTAGATCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGACTGTGTCTTGTGATTATTAGTGATCATTCTTATGTAGATCTAC  700

seq1  AGTGAAAAAGACCAAGCAGGGCAAAAAGAAATACAATGCTGTACAGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAAAGACCAAGCAGGGCAAAAAGAAATACAATGCTGTACAGTTTT  750

seq1  GAAGAAAAAAGAGCACCAGGAAATTTAAGGTTAGGGCCCAGTCTTATGTG  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAAGAAAAAAGAGCACCAGGAAATTTAA-GTTAGGGCCCAGTCTTATGTG  799

seq1  AAGAAGGTGAGAGGATGGTCGTTGGTGGTGATGGCCCATGCTTTAAAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGTGAGAGGATGGTCGTTGGTGGTGATGGCCCATGCTTTAAAACC  849

seq1  CAGCACGGGGAGACA-GGACAGGCAGATCTCTGAGTTTGA  889
      ||||||||||||||| ||||||||||||||||||||||||
seq2  CAGCACGGGGAGACAGGGACAGGCAGATCTCTGAGTTTGA  889