BAC Information

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BAC

Clone NameB6Ng01-332N20
Chromosome6 (Build37)
Map Location 18,158,556 - 18,292,204
singlet/doubletdoublet
Overlap geneCftr
Upstream geneCav2, Cav1, Met, Capza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751
Downstream geneCttnbp2, EG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332N20.bB6Ng01-332N20.g
ACCGA118842GA118843
length1,1541,179
definitionB6Ng01-332N20.b B6Ng01-332N20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,291,032 - 18,292,204)(18,158,556 - 18,159,616)
sequence
gaattcccaaacttaatgtctttaaaacattccaaaatctcaaactgcag
ccatattttctcctccattcttaacagtctcaacaaaacattcaatatct
ataactttttagaccaaaattgtgaatatcttccttacatcctcttctct
ctagtctgcaatgcattggcagattttgctgttttagcctcggtattgct
tctatttgttgcgagcttctgtgttccctcatatccaagactggcatagc
cctgattagcttccaagacaagtagagttcagtgctatggttgtagattg
ctgtcactatagactattacagtacacctgtctccctgctttcaacaccc
catggtgtcagcctggtcttccaaatggggctgcaaaaatgggtcctact
cttgtctctattcaaaatacttatttctttaatcacagcgagtaaagcta
ctggtcctacggagggccatgtcctctgaggctgctttactctctgacct
ccttgctggtccttcaggacacccagcttttacatcaggacatgcctcac
tctctcttctttcccacccagtgtccaattcattagaaaattctgactaa
cctcaggttataatttgttatgtcaaataattaattccctcgctttcctt
ttctctggtgtgctacagaacatgccttaattttctcccacctacattcc
ccctctctccatgaactagagtgtgagctctctgagatcaaggactcagc
tactctattccagcccctagagcacagaaatgggagtcagttcattcact
gattatttggtttacaattcctgcttgaagtcaccatcacccttggaaag
gaagatcgttaaagctcttaccagtgcaaagcactggcctatcttctttg
tgtctgaccagctccagactcaccagtaaaatgatggctttatttaccag
ttggagcatcatagctcttccagcccatctctagcccagcctctcacagc
ctcgcagaaatctcctcgtgatttttctgctagtcagtagtcagcctcat
cacttcactgtccccccaccccgagattctttaaccagtttgatgagctc
atcagcattttctcaacatgtctgctccttatcattcttctaggccttag
caac
gaattctttgtttagctctgcaccccatttaaaaatagcgttatttgatt
ctctatagtcacttcttgagttttttgtatatattggatattagcccact
attggatgtagggttggtaaagatcttttcccaatctgttggttgccatt
ttgtcctattgacagtgtcctttgccttacagaagctttgaaattttatg
aggtcccatttgtcaattcttgatcttagagcataaactatttgtgtttt
gttcagaaaaaaatttcctctgtgcttatgtgttggagacgctggtattg
gtacggtgacaggcaggtagataaatggaatagaattgaagacacagata
tgaacccacacatctatggtcacctgatctttgacaaaggagctaaaacc
atccagtggaaaaaaagacagcattttcaccaaatggtgctggttcaact
ggcagttatcatgtagaagaatgccaatcgatccattcttatctccttgt
acaaagctcaagtccaaatggaccaaggatcaccacataaaagcagataa
actgaaactaatagaaaagaaagtgaggaagagccttgagcacatgggca
caggagaaaattcagggtaatctaagggaagctaaataaagggaatctgt
aagcatgttcctgacagactgtgatcaccagagagagcttgttactgtag
aagtcacaggtgtatactcacacgtatcttcgattccatgtttccatcac
tacatgtaagtatcattagttcagcttaaatcgagaccttttttttttaa
gtcccagaaagctaacggacatgaagaaagcctggttctcacaatgccac
agttcttatattccccagactgttataaaagaggatctgtctctcatatt
tagacaaagacaggcttttgatccaagcctcctgctcctgaagcaagagt
atttgcggtaattctgcttatgagtaggctctgcctagggtactttttct
tcatacatcccctcagtacgatgctctcagcaaagcttctagagctgcta
ttctaggattcaacttctcatcttcttccaatccctgcgacaacccacag
ctggatggccttctcttgggattcagctcacctccacacctggaacctcc
taaggccagttctcctagcccctgatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18291032_18292204
seq2: B6Ng01-332N20.b_45_1198 (reverse)

seq1  GTTGCTAAAGCCTAGAAGAATGATAAGGAAGCCAGGACATGTTGAGAAAA  50
      |||||||| ||||||||||||||||||| |||   |||||||||||||||
seq2  GTTGCTAAGGCCTAGAAGAATGATAAGG-AGC--AGACATGTTGAGAAAA  47

seq1  TGCTGATGGAAGGCTCCATTCCAAACTGGTTAAAGAATTCTCGGGGGTGG  100
      ||||||||    ||| |||  |||||||||||||||| |||| |||||||
seq2  TGCTGATG---AGCT-CAT--CAAACTGGTTAAAGAA-TCTC-GGGGTGG  89

seq1  GGGGACAGTGAAGTTGATGAGGCTGACCTACTGACTAGCAGAAAAATCAC  150
      ||||||||||||| |||||||||||| |||||||||||||||||||||| 
seq2  GGGGACAGTGAAG-TGATGAGGCTGA-CTACTGACTAGCAGAAAAATCA-  136

seq1  CGAGGAGATTTTCCTGCGAGGCTTGTGAGAGGCTGGGCTAGAGATGGGCT  200
      |||||||||||  ||||||||| |||||||||||||||||||||||||||
seq2  CGAGGAGATTT--CTGCGAGGC-TGTGAGAGGCTGGGCTAGAGATGGGCT  183

seq1  GGAAGAGCTATTGATGCTTCCAACTGGTAAATAAAGCCATCATTTTACTG  250
      |||||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  GGAAGAGCTA-TGATGC-TCCAACTGGTAAATAAAGCCATCATTTTACTG  231

seq1  GTGAGTCTGGAGCTGGTCAGACACAAAGAAGATAGGCCAGTGCTTTGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTCTGGAGCTGGTCAGACACAAAGAAGATAGGCCAGTGCTTTGCAC  281

seq1  TGGTAAGAGCTTTAACGATCTTCCTTTCCAAGGGTGATGGTGACTTCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGAGCTTTAACGATCTTCCTTTCCAAGGGTGATGGTGACTTCAAG  331

seq1  CAGGAATTGTAAACCAAATAATCAGTGAATGAACTGACTCCCATTTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATTGTAAACCAAATAATCAGTGAATGAACTGACTCCCATTTCTGT  381

seq1  GCTCTAGGGGCTGGAATAGAGTAGCTGAGTCCTTGATCTCAGAGAGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGGGGCTGGAATAGAGTAGCTGAGTCCTTGATCTCAGAGAGCTCA  431

seq1  CACTCTAGTTCATGGAGAGAGGGGGAATGTAGGTGGGAGAAAATTAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTAGTTCATGGAGAGAGGGGGAATGTAGGTGGGAGAAAATTAAGGC  481

seq1  ATGTTCTGTAGCACACCAGAGAAAAGGAAAGCGAGGGAATTAATTATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTGTAGCACACCAGAGAAAAGGAAAGCGAGGGAATTAATTATTTG  531

seq1  ACATAACAAATTATAACCTGAGGTTAGTCAGAATTTTCTAATGAATTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACAAATTATAACCTGAGGTTAGTCAGAATTTTCTAATGAATTGGA  581

seq1  CACTGGGTGGGAAAGAAGAGAGAGTGAGGCATGTCCTGATGTAAAAGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGTGGGAAAGAAGAGAGAGTGAGGCATGTCCTGATGTAAAAGCTG  631

seq1  GGTGTCCTGAAGGACCAGCAAGGAGGTCAGAGAGTAAAGCAGCCTCAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCTGAAGGACCAGCAAGGAGGTCAGAGAGTAAAGCAGCCTCAGAG  681

seq1  GACATGGCCCTCCGTAGGACCAGTAGCTTTACTCGCTGTGATTAAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGCCCTCCGTAGGACCAGTAGCTTTACTCGCTGTGATTAAAGAAA  731

seq1  TAAGTATTTTGAATAGAGACAAGAGTAGGACCCATTTTTGCAGCCCCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATTTTGAATAGAGACAAGAGTAGGACCCATTTTTGCAGCCCCATT  781

seq1  TGGAAGACCAGGCTGACACCATGGGGTGTTGAAAGCAGGGAGACAGGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGACCAGGCTGACACCATGGGGTGTTGAAAGCAGGGAGACAGGTGT  831

seq1  ACTGTAATAGTCTATAGTGACAGCAATCTACAACCATAGCACTGAACTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAATAGTCTATAGTGACAGCAATCTACAACCATAGCACTGAACTCT  881

seq1  ACTTGTCTTGGAAGCTAATCAGGGCTATGCCAGTCTTGGATATGAGGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCTTGGAAGCTAATCAGGGCTATGCCAGTCTTGGATATGAGGGAA  931

seq1  CACAGAAGCTCGCAACAAATAGAAGCAATACCGAGGCTAAAACAGCAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGCTCGCAACAAATAGAAGCAATACCGAGGCTAAAACAGCAAAA  981

seq1  TCTGCCAATGCATTGCAGACTAGAGAGAAGAGGATGTAAGGAAGATATTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAATGCATTGCAGACTAGAGAGAAGAGGATGTAAGGAAGATATTC  1031

seq1  ACAATTTTGGTCTAAAAAGTTATAGATATTGAATGTTTTGTTGAGACTGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTGGTCTAAAAAGTTATAGATATTGAATGTTTTGTTGAGACTGT  1081

seq1  TAAGAATGGAGGAGAAAATATGGCTGCAGTTTGAGATTTTGGAATGTTTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATGGAGGAGAAAATATGGCTGCAGTTTGAGATTTTGGAATGTTTT  1131

seq1  AAAGACATTAAGTTTGGGAATTC  1173
      |||||||||||||||||||||||
seq2  AAAGACATTAAGTTTGGGAATTC  1154

seq1: chr6_18158556_18159616
seq2: B6Ng01-332N20.g_182_1246

seq1  TGGTAAAGATCTTTTCCCAATCTGTTGGTTGCCATTTTGTCCTATTGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAAGATCTTTTCCCAATCTGTTGGTTGCCATTTTGTCCTATTGACA  50

seq1  GTGTCCTTTGCCTTACAGAAGCTTTGAAATTTTATGAGGTCCCATTTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTTTGCCTTACAGAAGCTTTGAAATTTTATGAGGTCCCATTTGTC  100

seq1  AATTCTTGATCTTAGAGCATAAACTATTTGTGTTTTGTTCAGAAAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGATCTTAGAGCATAAACTATTTGTGTTTTGTTCAGAAAAAAAT  150

seq1  TTCCTCTGTGCTTATGTGTTGGAGACGCTGGTATTGGTACGGTGACAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGTGCTTATGTGTTGGAGACGCTGGTATTGGTACGGTGACAGGC  200

seq1  AGGTAGATAAATGGAATAGAATTGAAGACACAGATATGAACCCACACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGATAAATGGAATAGAATTGAAGACACAGATATGAACCCACACATC  250

seq1  TATGGTCACCTGATCTTTGACAAAGGAGCTAAAACCATCCAGTGGAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTCACCTGATCTTTGACAAAGGAGCTAAAACCATCCAGTGGAAAAA  300

seq1  AAGACAGCATTTTCACCAAATGGTGCTGGTTCAACTGGCAGTTATCATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGCATTTTCACCAAATGGTGCTGGTTCAACTGGCAGTTATCATGT  350

seq1  AGAAGAATGCCAATCGATCCATTCTTATCTCCTTGTACAAAGCTCAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAATGCCAATCGATCCATTCTTATCTCCTTGTACAAAGCTCAAGTC  400

seq1  CAAATGGACCAAGGATCACCACATAAAAGCAGATAAACTGAAACTAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGACCAAGGATCACCACATAAAAGCAGATAAACTGAAACTAATAG  450

seq1  AAAAGAAAGTGAGGAAGAGCCTTGAGCACATGGGCACAGGAGAAAATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAGTGAGGAAGAGCCTTGAGCACATGGGCACAGGAGAAAATTCA  500

seq1  GGGTAATCTAAGGGAAGCTAAATAAAGGGAATCTGTAAGCATGTTCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATCTAAGGGAAGCTAAATAAAGGGAATCTGTAAGCATGTTCCTGA  550

seq1  CAGACTGTGATCACCAGAGAGAGCTTGTTACTGTAGAAGTCACAGGTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGTGATCACCAGAGAGAGCTTGTTACTGTAGAAGTCACAGGTGTA  600

seq1  TACTCACACGTATCTTCGATTCCATGTTTCCATCACTACATGTAAGTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACACGTATCTTCGATTCCATGTTTCCATCACTACATGTAAGTATC  650

seq1  ATTAGTTCAGCTTAAATCGAGACC-TTTTTTTTTAAGTCCCAGAAAGCTA  699
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATTAGTTCAGCTTAAATCGAGACCTTTTTTTTTTAAGTCCCAGAAAGCTA  700

seq1  ACGGACATGAAGAAAGCCTGGTTCTCACAATGCCACAGTTCTTATATTCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGACATGAAGAAAGCCTGGTTCTCACAATGCCACAGTTCTTATATTCC  750

seq1  CCAGACTGTTATAAAAGAGGATCTGTCTCTCATATTTAGACAAAGACAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTGTTATAAAAGAGGATCTGTCTCTCATATTTAGACAAAGACAGG  800

seq1  CTTTTGAATCCAAGCCTCCTGCTCCTGAAGCAAGAGTATTTGCGGTAATT  849
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTG-ATCCAAGCCTCCTGCTCCTGAAGCAAGAGTATTTGCGGTAATT  849

seq1  CTGCTTATGAGTAGGCTCTGCCTAGGGTACTTTTTCTTCATACATCCCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTATGAGTAGGCTCTGCCTAGGGTACTTTTTCTTCATACATCCCCT  899

seq1  CAGTACGAATGCTCTCAGCAAAGCTTCTAGAGGCCTGCTA-TCTAGGATT  948
      ||||||| ||||||||||||||||||||||||  |||||| |||||||||
seq2  CAGTACG-ATGCTCTCAGCAAAGCTTCTAGAG--CTGCTATTCTAGGATT  946

seq1  C-ACTTCTCATCTCTGTCCCATCCCTGCGAACACCCACAGCTGGTTG--C  995
      | |||||||||||   ||| ||||||||||  |||||||||||| ||  |
seq2  CAACTTCTCATCTTCTTCCAATCCCTGCGACAACCCACAGCTGGATGGCC  996

seq1  TTCTCT--GGATTCAGCTTCACT-CACACCTGAACTCTTCCTAA-GCCAT  1041
      ||||||  ||||||||||   || |||||||| |  | |||||| |||| 
seq2  TTCTCTTGGGATTCAGCTCACCTCCACACCTGGA-ACCTCCTAAGGCCAG  1045

seq1  TTCT-CTAGCCCCTCTATATG  1061
      |||| |||||||||  |||||
seq2  TTCTCCTAGCCCCT-GATATG  1065