BAC Information

Click to search

BAC

Clone NameB6Ng01-334G04
Chromosome6 (Build37)
Map Location 22,875,303 - 22,876,461
singlet/doubletsinglet
Overlap genePtprz1
Upstream geneIng3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948, LOC100040959, LOC668018, LOC668022
Downstream geneAass, EG668044, EG546894, EG668053, EG384356, Fezf1, Cadps2, Rnf133, Rnf148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334G04.bB6Ng01-334G04.g
ACCGA119901GA119902
length1,1291,149
definitionB6Ng01-334G04.b B6Ng01-334G04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacttacaatgtccaatacagcctttccccttatcatagtcatac
attaaagatttcagtttcctcaagacatctaatttcatttgatttcagaa
ggaaacacgtttggaacgcgagataatcctttgggctcttttaaaaattt
ataggtgtgtgttagattgtaaacccaaaatggtttcaagtagcaggatt
tcaggtcttgaacttgaagacaagctgtcctttctggccatgtctccttc
atgatgatgcctccgagttgctgtgaactttgttctgactctgcctaaac
tttagcagtctttacaagtattacttacagttttcactaattactgcaga
tgtgtcgatgccgataacagtggagacgtgactgaatggagatgtcggga
gggcagcatagaaaagaatgttaaaaataatcacccatgctgtttaaaat
atttagacaacttatcattttaagttttagccacctgtttttcttcaaat
caatggtttcattattcttggttctagactgggcttatggatactacaga
caacagaggaaacttgttgaagagattggctggtcctacacaggtaagct
tattgcttacaccgtgataattaacaaaaactttcttggctctgtatttg
ttactttctgtaaaaggaattcttgtagtctagcacatcatttttgccta
cttccgcatagagctattaattaataaaatgtcattggaagaaagttatt
ttcaatgggcttctcctaagtttggtagtctagcatgttgaatagaactg
aacttagttctcagacctttatctgtatttcttggggatctgtgtaggca
acccgagtatcagtcttcttcatccgtgaagctgagggctaggctcagca
ggcaatgagtcaatgaagtgcaatacagtttcttaaagctttggcttttg
ttgttgttgtttaaatggaaacttccattacgtggtagatgctgtatact
gagatagtgattatcattttataaatgttcatatgagttcttcattcatt
ttcctcttctcgtcttcttttttatgtttttttttgagaaaggcttcctc
tcgaagtgtctaatgttcggtgactgagc
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactatggaaatcagtctggcggttcctca
gaaaactggatatagtactaccagaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taagatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtgaacactatgcccctccttagaagtgggaa
caaaatacccttggaaggagttacagagacaaagtttggagctgagataa
aaggatggaccatgtagacactagcatatccggggatccatcccataatc
ggcttccaaatgctgacaccattgcatacactagcaagattatgctgaaa
ggaccctgatatagctgtctcttgtcagagtatgcctgggcctagcaaac
atagaagtggatgctcacagtcggctattggatggatcacatggccccaa
tgaggagctagagaaagtaccaaagagctaaagggatctgcaccctatag
gtggaacacattatgactaaccagtacccgagctctgactctagctgcat
atgcatcaaagatgctagtcgccatcactcgaagagagccatgaaccgca
actttaatgcccagtacaggacgctcaggcataaggaaagtgggtggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_22875303_22876461
seq2: B6Ng01-334G04.b_46_1174

seq1  GAATTCACTTACAATGTCCAATACAGCCTTTCCCCTTATCATAGTCATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTACAATGTCCAATACAGCCTTTCCCCTTATCATAGTCATAC  50

seq1  ATTAAAGATTTCAGTTTCCTCAAGACATCTAATTTCATTTGATTTCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGATTTCAGTTTCCTCAAGACATCTAATTTCATTTGATTTCAGAA  100

seq1  GGAAACACGTTTGGAACGCGAGATAATCCTTTGGGCTCTTTTAAAAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACGTTTGGAACGCGAGATAATCCTTTGGGCTCTTTTAAAAATTT  150

seq1  ATAGGTGTGTGTTAGATTGTAAACCCAAAATGGTTTCAAGTAGCAGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGTGTGTTAGATTGTAAACCCAAAATGGTTTCAAGTAGCAGGATT  200

seq1  TCAGGTCTTGAACTTGAAGACAAGCTGTCCTTTCTGGCCATGTCTCCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCTTGAACTTGAAGACAAGCTGTCCTTTCTGGCCATGTCTCCTTC  250

seq1  ATGATGATGCCTCCGAGTTGCTGTGAACTTTGTTCTGACTCTGCCTAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGATGCCTCCGAGTTGCTGTGAACTTTGTTCTGACTCTGCCTAAAC  300

seq1  TTTAGCAGTCTTTACAAGTATTACTTACAGTTTTCACTAATTACTGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCAGTCTTTACAAGTATTACTTACAGTTTTCACTAATTACTGCAGA  350

seq1  TGTGTCGATGCCGATAACAGTGGAGACGTGACTGAATGGAGATGTCGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCGATGCCGATAACAGTGGAGACGTGACTGAATGGAGATGTCGGGA  400

seq1  GGGCAGCATAGAAAAGAATGTTAAAAATAATCACCCATGCTGTTTAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCATAGAAAAGAATGTTAAAAATAATCACCCATGCTGTTTAAAAT  450

seq1  ATTTAGACAACTTATCATTTTAAGTTTTAGCCACCTGTTTTTCTTCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGACAACTTATCATTTTAAGTTTTAGCCACCTGTTTTTCTTCAAAT  500

seq1  CAATGGTTTCATTATTCTTGGTTCTAGACTGGGCTTATGGATACTACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTTTCATTATTCTTGGTTCTAGACTGGGCTTATGGATACTACAGA  550

seq1  CAACAGAGGAAACTTGTTGAAGAGATTGGCTGGTCCTACACAGGTAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAGGAAACTTGTTGAAGAGATTGGCTGGTCCTACACAGGTAAGCT  600

seq1  TATTGCTTACACCGTGATAATTAACAAAAACTTTCTTGGCTCTGTATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTTACACCGTGATAATTAACAAAAACTTTCTTGGCTCTGTATTTG  650

seq1  TTACTTTCTGTAAAAGGAATTCTTGTAGTCTAGCACATCATTTTTGCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTCTGTAAAAGGAATTCTTGTAGTCTAGCACATCATTTTTGCCTA  700

seq1  CTTCCGCATAGAGCTATTAATTAATAAAATGTCATTGGAAGAAAGTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGCATAGAGCTATTAATTAATAAAATGTCATTGGAAGAAAGTTATT  750

seq1  TTCAATGGGCTTCTCCTAAGTTTGGTAGTCTAGCATGTTGAATAGAACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGGGCTTCTCCTAAGTTTGGTAGTCTAGCATGTTGAATAGAACTG  800

seq1  AACTTAGTTCTCAGACCTTTATCTGTATTTCTTGGGGATCTGTGTAGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGTTCTCAGACCTTTATCTGTATTTCTTGGGGATCTGTGTAGGCA  850

seq1  ACCCGAGTATCAGTCTTCTTCATCCGTGAAGCTGAGGGCTAGGCTCAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGAGTATCAGTCTTCTTCATCCGTGAAGCTGAGGGCTAGGCTCAGCA  900

seq1  GGCAATGAGTCAATGAAGTGCAATACAGTTTCTTAAAGCTTTGGCTTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGAGTCAATGAAGTGCAATACAGTTTCTTAAAGCTTTGGCTTTTG  950

seq1  TTGTTGTTGTTTAAATGGAAACTTCCATTACGTGGTAGATGCTGTTATAA  1000
      |||||||||||||||||||||||||||||||||||||||||||| ||| |
seq2  TTGTTGTTGTTTAAATGGAAACTTCCATTACGTGGTAGATGCTG-TAT-A  998

seq1  CTGAGATAGTGATTATCATTTTATAAATGTTCATAATGTATGTTTCTTTC  1050
      |||||||||||||||||||||||||||||||||| |||  |  ||| |||
seq2  CTGAGATAGTGATTATCATTTTATAAATGTTCAT-ATGAGTTCTTCATTC  1047

seq1  TTTTCTTTTTTCTCTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTT  1100
       |||   | ||||| ||                           || |||
seq2  ATTTTCCTCTTCTCGTC---------------------------TTCTTT  1070

seq1  TTTTTTTTTTTTTTTGAGTAAGGTCTTCCT-TCTGAATGTCTATATG-TC  1148
      ||| | |||||||||||| |||| |||||| ||  | |||||| ||| ||
seq2  TTTATGTTTTTTTTTGAGAAAGG-CTTCCTCTCGAAGTGTCTA-ATGTTC  1118

seq1  TGTGACTGAGC  1159
       ||||||||||
seq2  GGTGACTGAGC  1129