BAC Information

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BAC

Clone NameB6Ng01-334M18
Chromosome6 (Build37)
Map Location 87,006,137 - 87,205,196
singlet/doubletdoublet
Overlap geneGfpt1, D6Ertd527e, Antxr1
Upstream geneAdd2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1
Downstream geneGkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334M18.bB6Ng01-334M18.g
ACCGA120214GA120215
length1,1911,131
definitionB6Ng01-334M18.b B6Ng01-334M18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,204,005 - 87,205,196)(87,006,137 - 87,007,264)
sequence
gaattcctcacataaagtcaggaaaatggaagtaaacctaatgtatctta
tgagggaaaacagatcatcataacaatggaacctcggggaggcgtttgca
gcaggcaagatctgaatttaaagacgtgtgactcagtggctgtccaggag
agatggagggaggtctggttccagaagggcagatgctgggagcctggtta
ttatttgcatctggcgtccatcacagggacaattcctgacttctgtctgc
agtgataaacagcagccacagggggctgtagtttccatcacactgggtgc
tcctgggcttcaatcctttctgcttggcagcccagaggcttaggagggaa
ggaaggcagaccacacccacacgcagctcaccgcccactctgggtcttct
ccttgtggccccagaagacagggggtctaacgctatttttaagttaggaa
aactgaaggacacacctttttttctctccttgacaccttgaaaccctctt
aattgtgtttagacacaagcagcggcttcctcatagacatctggaatctc
tggcttgggataatatcaaacattgaaagcattcagttagttttatttaa
cattgggactgctcttgtgtgtccaaaatgtgtgtgctgtttgaaaccat
ttttcattgtccacaatgtagaagctgcttccaaagtcactgtaaatccc
cagtctcaaggaaaggcagaaactctcggaggatttgattttttcatccc
aaaacagtgagcttttgaactggccttctgtgagggcaaaccctaggggt
tagggatcgtgttcggaggggacaagacccgggacagccctgcacttgcc
agttgatctgtgaactctgatgtctcatccctttgttcttcctttcctgg
tatgcccttgggcaccacctgtgggccagcccgcccctcattcactcaga
gaaatacatgccactggagcaggcagcagcttgaacagcaaactcagtcc
acttccagcacagccttgagggctgcagagacagagggactccatctcag
aggatttgcttgtcacacagcaaacccgtgtgctcgaaagcaaaagtgcc
ttaaccacaggtgacacctcgtctcaagtgcagaattaaagctcaatgtc
attctaggaccaaacacattgaaaggcaattcaacctttaa
gaattcattgttattcataatggaatcatcaccaactacaaagacttgaa
aaagtttctggtaagcgaggtgaccctggaagacgccgtcttctgagagt
gggaggtagtttgttggggtgtgcagcgttatgcggacatgttcaagtaa
ttaccataattatctccagggtgtggcgtttcattgcatttctctgctga
cagtggaacagaattgatttctctttttttaataatttattttattttta
ttttatgtgcattggtgtcctgcctaaatgcacgtgtgttagggtgtcag
aaattggggttacagactgttgtgagccgccatgtggttgctgggaatcg
aatcccagtcctctggaagagcagtcagtgctcccaagtgctgagccatc
tccaaccccacagttctgattccttacatggcattttgaggacaagcttt
attctgtagtgtgacagggccatctcagtgtcgtctgttgagtttctgca
gtgatgagaactctctgtatctagcattgtgggagctgtgcctataggac
cgctgaactgctccgacagagaaactgggttttaagttttagtgtaaata
accatgcatagctaatggatcttcattggacagttgaggatcaccaaata
actgttgctcatgaaattagtattttgaatattatatatcctactatatt
ttcattacagtttaattcatatgcggcaaatctaagttaagccttttgag
ttgtattttgaattctctacaatcagattttaattttgattaaaattaat
tttaattattttattaactatattaattgattcttatttattaaatttgc
cattataaattaattttttaggtaatttaaattttgagtagaataaattc
agtatgacatcaaaaaaagttagtaattagtaagatctattaggttgatg
aggtgactcagtgggtaaagcggttgccagcggacagcggtgagtttgtc
cctgaaccccacagaaaggtggacagctaaagctgatgatgcctcatggt
ggtcctctaatccctcaagcacacaccatggtggacccattagccctgta
cttacaggaccttacacacgcatatagtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_87204005_87205196
seq2: B6Ng01-334M18.b_49_1239 (reverse)

seq1  TTAAAG--TGAA-TGCCTTTCATGGTGTTTTGGTCTTAGAATGACATTGA  47
      ||||||  |||| |||||||||  ||| ||||||| ||||||||||||||
seq2  TTAAAGGTTGAATTGCCTTTCAATGTG-TTTGGTCCTAGAATGACATTGA  49

seq1  G-TTTAAATCTGCACTTGGAGACGA-GTGTCA-CTGT-GTTAAGGCACTT  93
      | ||||| ||||||||| ||||||| |||||| |||| ||||||||||||
seq2  GCTTTAATTCTGCACTT-GAGACGAGGTGTCACCTGTGGTTAAGGCACTT  98

seq1  TTGCTTTTCGAGCACCACCGGTTTTGCTGTGTGACAAGCAAATTCCCTCT  143
      |||| ||||||||||   ||| |||||||||||||||||||||  |||||
seq2  TTGC-TTTCGAGCAC--ACGGGTTTGCTGTGTGACAAGCAAAT--CCTCT  143

seq1  GAGATGGAGTCCCTCTGTCTCCTGCAGCCCTCAAGGCTGTGCTGGAAGTG  193
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAGATGGAGTCCCTCTGTCT-CTGCAGCCCTCAAGGCTGTGCTGGAAGTG  192

seq1  GACTGAGTTTGCTGTTCAAGCTGCTGCCCTGCTCCAGTGGCATGTATTTC  243
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GACTGAGTTTGCTGTTCAAGCTGCTG-CCTGCTCCAGTGGCATGTATTTC  241

seq1  TCTGAGTGAATGAGGGGCGGGCTGG-CCACAGGTGGTGCCCAAGGGCATA  292
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCTGAGTGAATGAGGGGCGGGCTGGCCCACAGGTGGTGCCCAAGGGCATA  291

seq1  CCAGGAAAGGAAGAACAAAGGGATGAGACATCAGAGTTCACAGATCAACT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAAGGAAGAACAAAGGGATGAGACATCAGAGTTCACAGATCAACT  341

seq1  GGCAAGTGCAGGGCTGTCCCGGGTCTTGTCCCCTCCGAACACGATCCCTA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTGCAGGGCTGTCCCGGGTCTTGTCCCCTCCGAACACGATCCCTA  391

seq1  ACCCCTAGGGTTTGCCCTCACAGAAGGCCAGTTCAAAAGCTCACTGTTTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTAGGGTTTGCCCTCACAGAAGGCCAGTTCAAAAGCTCACTGTTTT  441

seq1  GGGATGAAAAAATCAAATCCTCCGAGAGTTTCTGCCTTTCCTTGAGACTG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGAAAAAATCAAATCCTCCGAGAGTTTCTGCCTTTCCTTGAGACTG  491

seq1  GGGATTTACAGTGACTTTGGAAGCAGCTTCTACATTGTGGACAATGAAAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTACAGTGACTTTGGAAGCAGCTTCTACATTGTGGACAATGAAAA  541

seq1  ATGGTTTCAAACAGCACACACATTTTGGACACACAAGAGCAGTCCCAATG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTCAAACAGCACACACATTTTGGACACACAAGAGCAGTCCCAATG  591

seq1  TTAAATAAAACTAACTGAATGCTTTCAATGTTTGATATTATCCCAAGCCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAAACTAACTGAATGCTTTCAATGTTTGATATTATCCCAAGCCA  641

seq1  GAGATTCCAGATGTCTATGAGGAAGCCGCTGCTTGTGTCTAAACACAATT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCCAGATGTCTATGAGGAAGCCGCTGCTTGTGTCTAAACACAATT  691

seq1  AAGAGGGTTTCAAGGTGTCAAGGAGAGAAAAAAAGGTGTGTCCTTCAGTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGTTTCAAGGTGTCAAGGAGAGAAAAAAAGGTGTGTCCTTCAGTT  741

seq1  TTCCTAACTTAAAAATAGCGTTAGACCCCCTGTCTTCTGGGGCCACAAGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAACTTAAAAATAGCGTTAGACCCCCTGTCTTCTGGGGCCACAAGG  791

seq1  AGAAGACCCAGAGTGGGCGGTGAGCTGCGTGTGGGTGTGGTCTGCCTTCC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACCCAGAGTGGGCGGTGAGCTGCGTGTGGGTGTGGTCTGCCTTCC  841

seq1  TTCCCTCCTAAGCCTCTGGGCTGCCAAGCAGAAAGGATTGAAGCCCAGGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCTAAGCCTCTGGGCTGCCAAGCAGAAAGGATTGAAGCCCAGGA  891

seq1  GCACCCAGTGTGATGGAAACTACAGCCCCCTGTGGCTGCTGTTTATCACT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCAGTGTGATGGAAACTACAGCCCCCTGTGGCTGCTGTTTATCACT  941

seq1  GCAGACAGAAGTCAGGAATTGTCCCTGTGATGGACGCCAGATGCAAATAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAGAAGTCAGGAATTGTCCCTGTGATGGACGCCAGATGCAAATAA  991

seq1  TAACCAGGCTCCCAGCATCTGCCCTTCTGGAACCAGACCTCCCTCCATCT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGGCTCCCAGCATCTGCCCTTCTGGAACCAGACCTCCCTCCATCT  1041

seq1  CTCCTGGACAGCCACTGAGTCACACGTCTTTAAATTCAGATCTTGCCTGC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGACAGCCACTGAGTCACACGTCTTTAAATTCAGATCTTGCCTGC  1091

seq1  TGCAAACGCCTCCCCGAGGTTCCATTGTTATGATGATCTGTTTTCCCTCA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACGCCTCCCCGAGGTTCCATTGTTATGATGATCTGTTTTCCCTCA  1141

seq1  TAAGATACATTAGGTTTACTTCCATTTTCCTGACTTTATGTGAGGAATTC  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATACATTAGGTTTACTTCCATTTTCCTGACTTTATGTGAGGAATTC  1191

seq1: chr6_87006137_87007264
seq2: B6Ng01-334M18.g_64_1194

seq1  GAATTCATTGTTATTCATAATGGAATCATCACCAACTACAAAGACTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTATTCATAATGGAATCATCACCAACTACAAAGACTTGAA  50

seq1  AAAGTTTCTGGTAAGCGAGGTGACCCTGGAAGACGCCGTCTTCTGAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTCTGGTAAGCGAGGTGACCCTGGAAGACGCCGTCTTCTGAGAGT  100

seq1  GGGAGGTAGTTTGTTGGGGTGTGCAGCGTTATGCGGACATGTTCAAGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTAGTTTGTTGGGGTGTGCAGCGTTATGCGGACATGTTCAAGTAA  150

seq1  TTACCATAATTATCTCCAGGGTGTGGCGTTTCATTGCATTTCTCTGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATAATTATCTCCAGGGTGTGGCGTTTCATTGCATTTCTCTGCTGA  200

seq1  CAGTGGAACAGAATTGATTTCTCTTTTTTTAATAATTTATTTTATTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAACAGAATTGATTTCTCTTTTTTTAATAATTTATTTTATTTTTA  250

seq1  TTTTATGTGCATTGGTGTCCTGCCTAAATGCACGTGTGTTAGGGTGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTGCATTGGTGTCCTGCCTAAATGCACGTGTGTTAGGGTGTCAG  300

seq1  AAATTGGGGTTACAGACTGTTGTGAGCCGCCATGTGGTTGCTGGGAATCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGGGTTACAGACTGTTGTGAGCCGCCATGTGGTTGCTGGGAATCG  350

seq1  AATCCCAGTCCTCTGGAAGAGCAGTCAGTGCTCCCAAGTGCTGAGCCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGTCCTCTGGAAGAGCAGTCAGTGCTCCCAAGTGCTGAGCCATC  400

seq1  TCCAACCCCACAGTTCTGATTCCTTACATGGCATTTTGAGGACAAGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCCCACAGTTCTGATTCCTTACATGGCATTTTGAGGACAAGCTTT  450

seq1  ATTCTGTAGTGTGACAGGGCCATCTCAGTGTCGTCTGTTGAGTTTCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTAGTGTGACAGGGCCATCTCAGTGTCGTCTGTTGAGTTTCTGCA  500

seq1  GTGATGAGAACTCTCTGTATCTAGCATTGTGGGAGCTGTGCCTATAGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAGAACTCTCTGTATCTAGCATTGTGGGAGCTGTGCCTATAGGAC  550

seq1  CGCTGAACTGCTCCGACAGAGAAACTGGGTTTTAAGTTTTAGTGTAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGAACTGCTCCGACAGAGAAACTGGGTTTTAAGTTTTAGTGTAAATA  600

seq1  ACCATGCATAGCTAATGGATCTTCATTGGACAGTTGAGGATCACCAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCATAGCTAATGGATCTTCATTGGACAGTTGAGGATCACCAAATA  650

seq1  ACTGTTGCTCATGAAATTAGTATTTTGAATATTATATATCCTACTATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGCTCATGAAATTAGTATTTTGAATATTATATATCCTACTATATT  700

seq1  TTCATTACAGTTTAATTCATATGCGGCAAATCTAAGTTAAGCCTTTTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTACAGTTTAATTCATATGCGGCAAATCTAAGTTAAGCCTTTTGAG  750

seq1  TTGTATTTTGAATTCTCTACAATCAGATTTTAATTTTGATTAAAATTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTTGAATTCTCTACAATCAGATTTTAATTTTGATTAAAATTAAT  800

seq1  TTTAATTATTTTATTAACTATATTAATTGATTCTTATTTATTAAATTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTATTTTATTAACTATATTAATTGATTCTTATTTATTAAATTTGC  850

seq1  CATTATAAATTAA-TTTTTAGGTAATTTAAATTTTGAGTAGAATAAATTC  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CATTATAAATTAATTTTTTAGGTAATTTAAATTTTGAGTAGAATAAATTC  900

seq1  AGTATGACATCAAAAAAAGTTAGTAATTAGTAAGATCTATTAGGTTGATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGACATCAAAAAAAGTTAGTAATTAGTAAGATCTATTAGGTTGATG  950

seq1  AGGTGACTCAGTGGGTAAAGCGGTTGCCAGCGGACAGCGGTGAGTTTGTT  999
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGGTGACTCAGTGGGTAAAGCGGTTGCCAGCGGACAGCGGTGAGTTTG-T  999

seq1  CCCTGAAACCCACAGAAAGGTGGACAGCTAAAGCTGATGATGCCTCATGG  1049
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAACCCCACAGAAAGGTGGACAGCTAAAGCTGATGATGCCTCATGG  1049

seq1  TGGTCCTCTAA-CCCTCAAGCACACACCATGGT-GACACATTTAGCCTGT  1097
      ||||||||||| ||||||||||||||||||||| ||| ||||   |||||
seq2  TGGTCCTCTAATCCCTCAAGCACACACCATGGTGGACCCATTAGCCCTGT  1099

seq1  ACTTACA-GACC-TACACACGCATATATGTGTG  1128
      ||||||| |||| |||||||||||||| |||||
seq2  ACTTACAGGACCTTACACACGCATATA-GTGTG  1131