BAC Information

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BAC

Clone NameB6Ng01-334P14
Chromosome6 (Build37)
Map Location 19,115,572 - 19,116,774
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7, LOC626180
Downstream geneEif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334P14.bB6Ng01-334P14.g
ACCGA120345GA120346
length6401,181
definitionB6Ng01-334P14.b B6Ng01-334P14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctaatagaattttggggttgtttgtgtatactaccatattatt
cacaaatagtgatagcttgacttctttccttcaaatttgtatcccacatc
cagtagataaacatggtcctcagaagagggatgaggtcaccgacttacct
taaaattttttgacccataattgttcctgtctaaaagaaataaaggaaca
aaaatcaagcaaagtttgaaggaaaggctatccagtgactggcccaattt
gggatacagtccatgggctggtaacaaaacctgacattattactgaatcc
aaattgtgcttgcagataggagtctagcatggctatcatctgagaggctt
taccagtacatttatgaggcagatactacagggatcaaggacccctatag
aagagctaggggaaggattgaagtagatgaaggggatgacaaccccatag
ggagaccaactttgttaactaacccagatcccaggaccttccagagacta
agccaccaaccaaagagcatgcatgggctgtgccaaggccctctgcacat
ccttttctggcttcagtaggagaggatatgcctaatcttgtagagacttg
atgccccaggaaaggggaataaggtgggggagttgggtag

gaattctactatgaagtcagtttgatcctacttagtacccagtggcacat
tagaagtggccagtgattaaagaggcactgaagacctagtcagtacagta
tcggtttcgggacaagatacgatgcttgagaatatgaatcagagcaaaga
aatcacatatagacagaaaatagaaatgatacaggacatatttaaaagaa
aatgagatgctgggacatactgtttatttttactattttattttttaccc
ccctcaaacaatgcaaaaactatacatctcgaacttaaaatgaaggtagg
tgctctgacctcagggaatgataacagattaccctgaattttcatggatg
gaaataaagcaatcccttaaaccaaatatatacttaaacatatgtacttt
taaaatagaagaacaaccttgtaaaatgtatttttgtactgtactttttc
taacattcttcatttatctagctaaacttcattagtgatttttttacagt
aattttttttgataaaagaacttacctcttaatcataaagcttcatttca
gaacatggttgaaagaagaaagaaagcatgtcagattgatatagatttga
atatgaactatactactaaataaccacttaaccataaaaataagtttatg
tggcctattttgtatttataaaatgctgatcatagttaatagcctcaccg
agtattgatgctgatgagatgtgttatgataataggtaaacatgtttgtc
tccgatactgttcactagcatatgttgtaatattgactcactgtatccaa
taaatgggaattacagaggtttctgtaaattagagaactgaggtttggct
ttatatatttcagttaaacatagattaaattctaaaccacacttttggat
tggataactgtcaacagaaatatacatgtgtctaacactgttcagatgtg
caagctctgtggaatctggtctcgtcatagacaggcagcttttgagagtg
agatagtacacaggcattttctctgatgcatcaacccactgaacactttt
attataagctctggtttctccccaacagtgtcttactttaaatagacgat
gatgaatgccaaatcactcagttagttggacctactcaataaagtggtga
tggctttaattaaagaatcgcagacctgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_19115572_19116774
seq2: B6Ng01-334P14.g_68_1247

seq1  GAATTCTACTATGAAGTCAGTTTGATCCTACTTAGTACCCAGTGGCACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTATGAAGTCAGTTTGATCCTACTTAGTACCCAGTGGCACAT  50

seq1  TAGAAGTGGCCAGTGATTAAAGAGGCACTGAAGACCTAGTCAGTACAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTGGCCAGTGATTAAAGAGGCACTGAAGACCTAGTCAGTACAGTA  100

seq1  TCGGTTTCGGGACAAGATACGATGCTTGAGAATATGAATCAGAGCAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTTTCGGGACAAGATACGATGCTTGAGAATATGAATCAGAGCAAAGA  150

seq1  AATCACATATAGACAGAAAATAGAAATGATACAGGACATATTTAAAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACATATAGACAGAAAATAGAAATGATACAGGACATATTTAAAAGAA  200

seq1  AATGAGATGCTGGGACATACTGTTTATTTTTACTATTTTATTTTTTACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATGCTGGGACATACTGTTTATTTTTACTATTTTATTTTTTACCC  250

seq1  CCCTCAAACAATGCAAAAACTATACATCTCGAACTTAAAATGAAGGTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAACAATGCAAAAACTATACATCTCGAACTTAAAATGAAGGTAGG  300

seq1  TGCTCTGACCTCAGGGAATGATAACAGATTACCCTGAATTTTCATGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGACCTCAGGGAATGATAACAGATTACCCTGAATTTTCATGGATG  350

seq1  GAAATAAAGCAATCCCTTAAACCAAATATATACTTAAACATATGTACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAGCAATCCCTTAAACCAAATATATACTTAAACATATGTACTTT  400

seq1  TAAAATAGAAGAACAACCTTGTAAAATGTATTTTTGTACTGTACTTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGAAGAACAACCTTGTAAAATGTATTTTTGTACTGTACTTTTTC  450

seq1  TAACATTCTTCATTTATCTAGCTAAACTTCATTAGTGATTTTTTTACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTCTTCATTTATCTAGCTAAACTTCATTAGTGATTTTTTTACAGT  500

seq1  AATTTTTTTTGATAAAAGAACTTACCTCTTAATCATAAAGCTTCATTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTTGATAAAAGAACTTACCTCTTAATCATAAAGCTTCATTTCA  550

seq1  GAACATGGTTGAAAGAAGAAAGAAAGCATGTCAGATTGATATAGATTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGGTTGAAAGAAGAAAGAAAGCATGTCAGATTGATATAGATTTGA  600

seq1  ATATGAACTATACTACTAAATAACCACTTAACCATAAAAATAAGTTTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAACTATACTACTAAATAACCACTTAACCATAAAAATAAGTTTATG  650

seq1  TGGCCTATTTTGTATTTATAAAATGCTGATCATAGTTAATAGCCTCACCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTATTTTGTATTTATAAAATGCTGATCATAGTTAATAGCCTCACCG  700

seq1  AGTATTGATGCTGATGAGATGTGTTATGATAATAGGTAAACATGTTTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGATGCTGATGAGATGTGTTATGATAATAGGTAAACATGTTTGTC  750

seq1  TCCGATACTGTTCACTAGCATATGTTGTAATATTGACTCACTGTATCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGATACTGTTCACTAGCATATGTTGTAATATTGACTCACTGTATCCAA  800

seq1  TAAATGGGAATTACAGAGGTTTCTGTAAATTAGAGAACTGAGGTTTGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGGAATTACAGAGGTTTCTGTAAATTAGAGAACTGAGGTTTGGCT  850

seq1  TTATATATTTCAGTTAAACATAGATTAAATTCTAAACCACACTTTTGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATTTCAGTTAAACATAGATTAAATTCTAAACCACACTTTTGGAT  900

seq1  TGGATAACTGTCAACAGAAATATACATGTGTCTTAACACTGTTCAGATGT  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGGATAACTGTCAACAGAAATATACATGTGTC-TAACACTGTTCAGATGT  949

seq1  GCAAGCTCTGTGGAATCTGGTCTCGTCATAGACAAGGCAGGCTTTTGAGA  1000
      ||||||||||||||||||||||||||||||||| ||||| ||||||||||
seq2  GCAAGCTCTGTGGAATCTGGTCTCGTCATAGAC-AGGCA-GCTTTTGAGA  997

seq1  GTGAGATAAGTAACAACAGGGCATTTTCTCTGATGCATCCAACCCACTGA  1050
      ||||||| ||||   ||| ||||||||||||||||||| |||||||||||
seq2  GTGAGAT-AGTA--CACA-GGCATTTTCTCTGATGCAT-CAACCCACTGA  1042

seq1  ACACTTTTATTATAAAGCTCCTGGTTTCTCCCCAACAGTGTCCTAACCTT  1100
      ||||||||||||| ||||| |||||||||||||||||||||| ||  |||
seq2  ACACTTTTATTAT-AAGCT-CTGGTTTCTCCCCAACAGTGTCTTA--CTT  1088

seq1  TAAAT-GACAGAATTGATGAAGTGGCAAATTCAACTTCAGTTATAATTTT  1149
      ||||| ||| ||  ||||||| || |||| |||   |||||||       
seq2  TAAATAGAC-GA--TGATGAA-TGCCAAA-TCA--CTCAGTTA------G  1125

seq1  TTGCACCTACTCAATTAAAATTTGTGATTGAATTTAATT-AAGA---TCA  1195
      ||| |||||||||||  ||| | |||| ||  ||||||| ||||    ||
seq2  TTGGACCTACTCAAT--AAAGTGGTGA-TGGCTTTAATTAAAGAATCGCA  1172

seq1  GACCTGTC  1203
      ||||||||
seq2  GACCTGTC  1180


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