BAC Information

Click to search

BAC

Clone NameB6Ng01-335E14
Chromosome17 (Build37)6 (Build37)
Map Location 29,069,972 - 29,070,477117,928,963 - 117,930,148
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAnks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik
Downstream genePxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335E14.bB6Ng01-335E14.g
ACCGA120566GA120567
length9831,176
definitionB6Ng01-335E14.b B6Ng01-335E14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,069,972 - 29,070,477)(117,928,963 - 117,930,148)
sequence
gaattccaggacagccagggctatacagagaaaccctgtctcgggaaaaa
aaaaaaaaatatatatatatatatacacacacacatatataaatatatat
atgtatatatatatacacacatatatataatgtgtatgtgaacacacaca
gacatatagtatgtgtattgtttgaatgaagttattccacttggggtgat
aatggtgcccccaagagccatagactatctagcccaagtcccagtgccag
gcatgggaaacctcccttcaagttgttggccagtggagtcaaagagacgc
tcaaaatagcacaggtttttgccattgctcttaatttgacattcagacgc
tatttcagagaacgcctcaaacttccaactcaggacttagaggactcaag
ctggaactaatctgcaagcctcctccataaggactagatcttatagtacc
agaaggttatacagaagctgccaaaggagaaaagcaatggctagtcctac
ccaactgcaaaatctacaaactacagcagtgaccagcatagcaagaggtc
cccaagaagccaggcgtggtggcgcacgcctttaatcccagcacttggga
ggcagaggcagacagatctctgagttcgaggccagcctggtctacagagt
gagttccagaacagccagggctaaacgagaaaccctgtcttgaaaaaaaa
aaaaacaacaacaacaaaaagaggtccccaaaggtaggacttacattctg
gggacaaccaacaaccacctaattggacataagacccactcaataggagg
gaattcgtgcatggtactgtaagctcagccagctacatgtttgtggctgg
tgagttcgtggatcttagaggagaatctgtactgatgcccctcctaaacc
aatataattcctaactgcacccaaaaatccttctccttataccccacata
taagcatagccctgaccccctccccccccccca
gaattcctgacactgagccactaaaacatgggcaacgacaacatacaaag
agagtgttgacctgtcagtggatgcacactagtgaggatatagtcggggc
agtgtttgaaggacaactgagcatagctattaaaatcaaagtgtgcaaac
cctagaccaagagttcccacctcctacacagaggtacaaaggatgctcct
tttagaactgtctgtaatcacaatgcgaatatataagataagataacccc
aatgcctattaacgtggaaaagtgcaaatgaatgatcagtattcgtctcc
ttaggaatgaagttgccctatatgtactaagatagaaagctcctccctga
ttatattaagcagagagagcatattgcagaagtgtggatatgtagggcac
catttgtgttaactcacacatgaagcccagaatatgcaaaagcaaattaa
acagaaagccatcaagaaggaggtacactcccacctgtccccctcaggga
ggaccttgcccccttcatgctcagccaaggggcaggtggctatgcagcag
ggcttctgcagctattcaagttcctccctttaattaacggatgtccctgt
attagcgatgcaatttgttcatggccaagtgaaagcagaaaggattcgat
ttcgtttggagccaaagataaaagtacacttgaaagcgtggggaactgat
gaagtcctgagtggatgcctgttgttggtatgagctcagccatgttaaga
attctaatgcctcagacctatggggttagcacggtcttccccaggtccaa
gcacggatgttgacagcgtgtgcaggaagtatcagtcccagtgtccaagt
gtacatctccaagatggctacagcctgagactgcttccctaccaagagtc
gctcactggcctcctcatcccggccgtatataatagtgtgctgagtctcc
agttcagctgctgctgctgctgctgctgctgctgctgctgctgctgctgc
tgctgctgctcatctgagcacatggctcactggccccagctttattatca
ctgtgtcttgtctttcttcatccctgtcgcgtttgtcacacgaagcatgc
agatgtacatcaggcacggtccaatgcttgtgtgttccatggtcctggga
ttgtttttccaggtccataaactccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_29069972_29070477
seq2: B6Ng01-335E14.b_53_165 (reverse)

seq1  TGTATGTATATATGTATATGTATATATGTATATGTGTGTGTGTATATATA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TATATATACATACATATATATATATATATATATTTGAGGGGACACGATGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  AAAATAACGGTTTCATTCTAATTCTCCTATTATTTTAATTTTGAAACCAC  150
                                                        
seq2  --------------------------------------------------  0

seq1  ACAAATACCTATTCAAAGGATATATATACATATATATATATGATTTAATC  200
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTATTTTATGTGTATGAGTACATGCTGTAGCTGTATAGATGGTTGTGA  250
                                                        
seq2  --------------------------------------------------  0

seq1  GCCTTCATCTGCTTGTTGGGAATTGAATTTAGGACTTCTGCTCACTTTGA  300
                                                        
seq2  --------------------------------------------------  0

seq1  CCCCATTACGGGCAGCAGATCCCATTACAGATGGTTGTGAGCCACCATGT  350
                                                        
seq2  --------------------------------------------------  0

seq1  GGTTGTTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTCAGTGCCCTT  400
                                                 ||    |
seq2  -------------------------------------------TG----T  3

seq1  ACCTACTGAGCCATCTCTCCAACCCCCTCAAAAAAT---------TATAT  441
      |  ||   |  ||| | |  |      |  | | ||         |||||
seq2  ATATATATATACATATATATA------TTTATATATGTGTGTGTGTATAT  47

seq1  ATATATATTTGTTTGTTTTTGTTTT-TCGAGACAGGGTTTCTCTGTATAG  490
      |||||||| | ||| ||||| ||||  |||||||||||||||||||||||
seq2  ATATATATATATTTTTTTTTTTTTTCCCGAGACAGGGTTTCTCTGTATAG  97

seq1  CCCTGGCTGTCCTGGA  506
      ||||||||||||||||
seq2  CCCTGGCTGTCCTGGA  113

seq1: chr6_117928963_117930148
seq2: B6Ng01-335E14.g_67_1242 (reverse)

seq1  GGGAGTTTATGG-CCTGGGAACAC-ATCCCAGGACCCCATGTGACACACC  48
      |||||||||||| ||||| || || |||||||||  |||||  |||||| 
seq2  GGGAGTTTATGGACCTGGAAAAACAATCCCAGGA--CCATGGAACACAC-  47

seq1  AAGGCATGGGA-CGTGCTTTGATGTTACAACCTGCATGGCTTTGGTTGTG  97
       | |||| ||| |||||  ||||| ||| | |||||| |||| |  ||||
seq2  -AAGCATTGGACCGTGC-CTGATG-TAC-ATCTGCAT-GCTTCG--TGTG  90

seq1  ACAAAAGGCGACAGGGAATGAAGAAAAGAC-AGACACAGGTGAT-ATAAA  145
      || ||| ||||||||| |||||| |||||| ||||||| ||||| |||||
seq2  AC-AAACGCGACAGGG-ATGAAG-AAAGACAAGACACA-GTGATAATAAA  136

seq1  GCTGGGGCCAGTGAGCCATGTGCTCAGATGGAGCAGCAGCAGCAGCAGCA  195
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTGGGGCCAGTGAGCCATGTGCTCAGAT-GAGCAGCAGCAGCAGCAGCA  185

seq1  GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCTGAACTGGAGACTC  245
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG-CTGAACTGGAGACTC  234

seq1  AGCACACTATTATATACGGCC-GGATGAGGAGGCCAGTGAGCGACTCTTG  294
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGCACACTATTATATACGGCCGGGATGAGGAGGCCAGTGAGCGACTCTTG  284

seq1  GTAGGGAAGCAGTCTCAGGCTGTAGCCATCTTGGAGATGTACACTTGGAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGAAGCAGTCTCAGGCTGTAGCCATCTTGGAGATGTACACTTGGAC  334

seq1  ACTGGGACTGATACTTCCTGCACACGCTGTCAACATCCGTGCTTGGACCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGACTGATACTTCCTGCACACGCTGTCAACATCCGTGCTTGGACCT  384

seq1  GGGGAAGACCGTGCTAACCCCATAGGTCTGAGGCATTAGAATTCTTAACA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGACCGTGCTAACCCCATAGGTCTGAGGCATTAGAATTCTTAACA  434

seq1  TGGCTGAGCTCATACCAACAACAGGCATCCACTCAGGACTTCATCAGTTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAGCTCATACCAACAACAGGCATCCACTCAGGACTTCATCAGTTC  484

seq1  CCCACGCTTTCAAGTGTACTTTTATCTTTGGCTCCAAACGAAATCGAATC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGCTTTCAAGTGTACTTTTATCTTTGGCTCCAAACGAAATCGAATC  534

seq1  CTTTCTGCTTTCACTTGGCCATGAACAAATTGCATCGCTAATACAGGGAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGCTTTCACTTGGCCATGAACAAATTGCATCGCTAATACAGGGAC  584

seq1  ATCCGTTAATTAAAGGGAGGAACTTGAATAGCTGCAGAAGCCCTGCTGCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGTTAATTAAAGGGAGGAACTTGAATAGCTGCAGAAGCCCTGCTGCA  634

seq1  TAGCCACCTGCCCCTTGGCTGAGCATGAAGGGGGCAAGGTCCTCCCTGAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACCTGCCCCTTGGCTGAGCATGAAGGGGGCAAGGTCCTCCCTGAG  684

seq1  GGGGACAGGTGGGAGTGTACCTCCTTCTTGATGGCTTTCTGTTTAATTTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACAGGTGGGAGTGTACCTCCTTCTTGATGGCTTTCTGTTTAATTTG  734

seq1  CTTTTGCATATTCTGGGCTTCATGTGTGAGTTAACACAAATGGTGCCCTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCATATTCTGGGCTTCATGTGTGAGTTAACACAAATGGTGCCCTA  784

seq1  CATATCCACACTTCTGCAATATGCTCTCTCTGCTTAATATAATCAGGGAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCACACTTCTGCAATATGCTCTCTCTGCTTAATATAATCAGGGAG  834

seq1  GAGCTTTCTATCTTAGTACATATAGGGCAACTTCATTCCTAAGGAGACGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTCTATCTTAGTACATATAGGGCAACTTCATTCCTAAGGAGACGA  884

seq1  ATACTGATCATTCATTTGCACTTTTCCACGTTAATAGGCATTGGGGTTAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGATCATTCATTTGCACTTTTCCACGTTAATAGGCATTGGGGTTAT  934

seq1  CTTATCTTATATATTCGCATTGTGATTACAGACAGTTCTAAAAGGAGCAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTTATATATTCGCATTGTGATTACAGACAGTTCTAAAAGGAGCAT  984

seq1  CCTTTGTACCTCTGTGTAGGAGGTGGGAACTCTTGGTCTAGGGTTTGCAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTACCTCTGTGTAGGAGGTGGGAACTCTTGGTCTAGGGTTTGCAC  1034

seq1  ACTTTGATTTTAATAGCTATGCTCAGTTGTCCTTCAAACACTGCCCCGAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGATTTTAATAGCTATGCTCAGTTGTCCTTCAAACACTGCCCCGAC  1084

seq1  TATATCCTCACTAGTGTGCATCCACTGACAGGTCAACACTCTCTTTGTAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCTCACTAGTGTGCATCCACTGACAGGTCAACACTCTCTTTGTAT  1134

seq1  GTTGTCGTTGCCCATGTTTTAGTGGCTCAGTGTCAGGAATTC  1186
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCGTTGCCCATGTTTTAGTGGCTCAGTGTCAGGAATTC  1176