BAC Information

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BAC

Clone NameB6Ng01-335I03
Chromosome6 (Build37)
Map Location 60,747,621 - 60,748,841
singlet/doubletsinglet
Overlap geneSnca
Upstream geneEG627108, EG434019, LOC671300, EG627178, LOC100041706, LOC100041717, A530053G22Rik, LOC667066, LOC100041726, ENSMUSG00000064018
Downstream geneMmrn1, LOC100041756, LOC100041764, C130092O11Rik, LOC100042694
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335I03.bB6Ng01-335I03.g
ACCGA120711GA120712
length1,1651,200
definitionB6Ng01-335I03.b B6Ng01-335I03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcatggaggcaagaaaaaatgttctaggagaggacggcacaccc
actgccctccctaacctcgtggacgaggctttccccttgaaccgccccaa
ctgggactacaacaccgcggaaggtaggggacgcctccttgtctatcgcc
ggactctagtggcaggtctcagaggagccgctagatggcccaccaatttg
gctaaggtaagagaggtcttgcaggggcagactgaaccaccctcaatctt
ccttgagcgtctcatggaggcatatagaaggtacaccccttttgacccct
cgtcagagggacagaaggccgctgtagccatggccttcattggtcagtcc
gctcccgacattaagaaaaagctgcaaaggctggaggggctccaagattt
agtaaaagaagcagagaaagtctatcataagagagaaacagaagaagaga
ggcaggagagagaaaagaaagagatggaggagagggaaaatagacaggac
cgccgtcaggagagaaatctgagtaaaattttggccacagttgtaaatga
tagacagtcagaaaaaggtaaaacagggctcctgggcaacagggcaggga
agccgccaggtggcagaaaaataccactggaaaaagaccaatgcgcctat
tgcaaagagaaagaacactgggctagagactgccctaaaaaccgggagcg
atctaaggtcctgaccctagaagatgattagggaagtcggggctcagacc
ccctccctgagcctagggtaactttgtccgtggaggggactcccgtcaat
ttcctgatagacaccggagcagagcattcagtactcactaaccacctagg
caagctaggctccaaaaagaccatggtaattggagccactggcagtaaat
tttacccctggacgaccaaacgagctcttcagatagacaagaacatagtg
acccactcctttcctggtgatacctgagtgcctgctcccctcttgggggc
gcgatctgctaacaaactaaatgctcaagttctatttacttcagatgcac
agttaggctgggtaaaaggcctgttgctgcttgtcctcaacacagagaag
aatcctgagaatcctgccagatgaatcataggtatcggttcggacaatgg
tgaccacgcccttgt
gaattcccatactaaattcaaaaattaaccgaaaggtagagtttcctcag
tctgtcttaacacacgacattctgtgcagtgctggtttctcctgtccaca
gtggaatcatctcaaacttcttaactcttgggcagccatgaagatgaagg
ctaagacactaaatcttccacaaatttatcttgctcttctgtctactctc
acttttactggcagtggcaaatagaattgaggttgttaagagtctgttgt
tacttatttaatagaaggaaaaagtaaaacagtattattgctacagagcc
ttgatcaaaaccaagactcaaggaagtacaaatccttgtacttccagtaa
gagcatctggcaaagagacccaagattttggcaccatccatatgctatgt
gataatgtatgcatatggtgtggttttaagaaattagaattctaaaatag
tttgtatagtcaggctatgtaatgtcgctttctctagtgtcctgcagaaa
gtgagagtgctctcattaggtacctggtcaggaacaaattgcttcattct
tcagttatttaataatggaaacttaaaaaaacaaaaacccaaaaacatgt
tttagaggtgtggtgataaatgtcctagtgcctgccatataagagcttag
agattatagacttggtattctttcgagggctagatattttaatgctttat
cctgacatttatcaaattgcacttcggttggtgagtgtcacattaccctg
acaaattattaacattataaagaaaggactgtcaccaatgagtcaatata
atttttatagtgttttataaatttcatattttgtataacttaaggtgcat
gggatatttattattttctatttgttgtcaacactaatgctacataaaat
gtaatgtaatttatttttgcaatacattttaaagtctgtaaaaggaccca
aatatactccaaatctcataaatggtaagtgaccctgaaagacacctact
gagatttagtgacttgaaagttcattgttttgcatgactcatcagagtac
tgtacctcaagaatttcatcttagtcatagaagtcctcatgaatatagtc
taatgtatcgcaacatgcggccttttactcaaattctaacagttaacaat
cttatccatgaatattcaaccggaatgggtggaaagttatcttgtctacg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_60747621_60748841
seq2: B6Ng01-335I03.g_67_1266 (reverse)

seq1  CGTAGACAAGATATAAATCTTTCACTACCCATTTTCTACTGGTTTAAATA  50
      ||||||||||||    | ||||  | |||||||     | || || ||||
seq2  CGTAGACAAGAT----AACTTT--CCACCCATT-----CCGG-TTGAATA  38

seq1  TTTCATAGGATATAGATTTGTTAACTGTTAGGATTTTTGAGTAAAAGGCC  100
       ||||| ||||| ||| |||||||||||||| |  |||||||||||||||
seq2  -TTCAT-GGATA-AGA-TTGTTAACTGTTAGAA--TTTGAGTAAAAGGCC  82

seq1  GCATGTTGCGATACATATGACTATATTCATGA-GACTTCTATGACTTAAG  149
      ||||||||||||||||  |||||||||||||| |||||||||||| ||||
seq2  GCATGTTGCGATACATTAGACTATATTCATGAGGACTTCTATGAC-TAAG  131

seq1  ATGAAATTCTTTGAGGTACAGTACTTCTGATGAGTCATGCAAA--CATGG  197
      ||||||||| |||||||||||||| ||||||||||||||||||   ||| 
seq2  ATGAAATTC-TTGAGGTACAGTAC-TCTGATGAGTCATGCAAAACAATGA  179

seq1  ACTTTCAAGTCACTAAATCTCAGTAGGTTGTCTTTCAGGGTCACTTACCA  247
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACTTTCAAGTCACTAAATCTCAGTAGG-TGTCTTTCAGGGTCACTTACCA  228

seq1  TTTATGAGATTTGGAGTATATTTGGGTCCTTTTTACAGACTTTAAAATGT  297
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTATGAGATTTGGAGTATATTTGGGTCC-TTTTACAGACTTTAAAATGT  277

seq1  ATTTGCAAAAATAAATTACATTACATTTTATGTAGCATTAGTGTTGACAA  347
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTGCAAAAATAAATTACATTACATTTTATGTAGCATTAGTGTTGACAA  326

seq1  CAAATAGAAATTAATAAATATCCCATGCACCTTAAGTTATACAAAATATG  397
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGAAAATAATAAATATCCCATGCACCTTAAGTTATACAAAATATG  376

seq1  AAATTTATAAAACACTATAAAAATTATATTGACTCATTGGTGACAGTCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATAAAACACTATAAAAATTATATTGACTCATTGGTGACAGTCCT  426

seq1  TTCTTTATAATGTTAATAATTTGTCAGGGTAATGTGACACTCACCAACCG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATAATGTTAATAATTTGTCAGGGTAATGTGACACTCACCAACCG  476

seq1  AAGTGCAATTTGATAAATGTCAGGATAAAGCATTAAAATATCTAGCCCTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCAATTTGATAAATGTCAGGATAAAGCATTAAAATATCTAGCCCTC  526

seq1  GAAAGAATACCAAGTCTATAATCTCTAAGCTCTTATATGGCAGGCACTAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAATACCAAGTCTATAATCTCTAAGCTCTTATATGGCAGGCACTAG  576

seq1  GACATTTATCACCACACCTCTAAAACATGTTTTTGGGTTTTTGTTTTTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTATCACCACACCTCTAAAACATGTTTTTGGGTTTTTGTTTTTTT  626

seq1  AAGTTTCCATTATTAAATAACTGAAGAATGAAGCAATTTGTTCCTGACCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCCATTATTAAATAACTGAAGAATGAAGCAATTTGTTCCTGACCA  676

seq1  GGTACCTAATGAGAGCACTCTCACTTTCTGCAGGACACTAGAGAAAGCGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCTAATGAGAGCACTCTCACTTTCTGCAGGACACTAGAGAAAGCGA  726

seq1  CATTACATAGCCTGACTATACAAACTATTTTAGAATTCTAATTTCTTAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACATAGCCTGACTATACAAACTATTTTAGAATTCTAATTTCTTAAA  776

seq1  ACCACACCATATGCATACATTATCACATAGCATATGGATGGTGCCAAAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACCATATGCATACATTATCACATAGCATATGGATGGTGCCAAAAT  826

seq1  CTTGGGTCTCTTTGCCAGATGCTCTTACTGGAAGTACAAGGATTTGTACT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTCTCTTTGCCAGATGCTCTTACTGGAAGTACAAGGATTTGTACT  876

seq1  TCCTTGAGTCTTGGTTTTGATCAAGGCTCTGTAGCAATAATACTGTTTTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAGTCTTGGTTTTGATCAAGGCTCTGTAGCAATAATACTGTTTTA  926

seq1  CTTTTTCCTTCTATTAAATAAGTAACAACAGACTCTTAACAACCTCAATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCTTCTATTAAATAAGTAACAACAGACTCTTAACAACCTCAATT  976

seq1  CTATTTGCCACTGCCAGTAAAAGTGAGAGTAGACAGAAGAGCAAGATAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGCCACTGCCAGTAAAAGTGAGAGTAGACAGAAGAGCAAGATAAA  1026

seq1  TTTGTGGAAGATTTAGTGTCTTAGCCTTCATCTTCATGGCTGCCCAAGAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGAAGATTTAGTGTCTTAGCCTTCATCTTCATGGCTGCCCAAGAG  1076

seq1  TTAAGAAGTTTGAGATGATTCCACTGTGGACAGGAGAAACCAGCACTGCA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAGTTTGAGATGATTCCACTGTGGACAGGAGAAACCAGCACTGCA  1126

seq1  CAGAATGTCGTGTGTTAAGACAGACTGAGGAAACTCTACCTTTCGGTTAA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTCGTGTGTTAAGACAGACTGAGGAAACTCTACCTTTCGGTTAA  1176

seq1  TTTTTGAATTTAGTATGGGAATTC  1221
      ||||||||||||||||||||||||
seq2  TTTTTGAATTTAGTATGGGAATTC  1200