BAC Information

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BAC

Clone NameB6Ng01-335N14
Chromosome6 (Build37)
Map Location 15,715,092 - 15,716,139
singlet/doubletsinglet
Overlap geneMdfic
Upstream geneFoxp2, LOC100040568
Downstream geneLOC100041116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335N14.g
ACCGA120949
length1,049
definitionB6Ng01-335N14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttatgtgttttggagcattcattaatttgcgatcccaatcaggt
gctatggctccttggatgtgagttcacaagacagagaccattcttgagtc
tggaatactgtggtttatgttaaaagattaaatcaaatgtgaagtaaatt
accagatgacaatgggaagtagtaccatccaaaataaaagagaccaactg
ttcaaaattgctgggagaagtaactggagtatggctaccgtatttcataa
agagcactatcacataactaaacatatttaacacctggaggcagataact
tctggcaaatgcatttccatgttgttcaaggctggtatctaatcctgtgc
tgaatcttgccttgaaggcagattcagccattggtccaggttctcagaga
tagacttgtttccacactctccttccaggcctggccctgaggctttgggt
gtgacctaccctgggagccaccaagctttaatcacagttgagaagcataa
ttcagggatgttgaaagattcaaataccagaaatcttcatggcagcaatg
agaagactgacttcccagttccagtttttggtccttcccttaatttccct
tactgagtttacccacattttaatttttttctcgtttgcctcctgttttt
acattctgtgacaatactactaattttttgttttccaatcttctattgaa
aaccttctgtcaaataaatatgcaaacataatcttgcattttctaggaga
aatataataaaaatgaataaattcaggaaaaattaagaacatagaacatt
ttttttcatttaagatatataaatatctctaaaatgtcctcaaactataa
gtctgtgaaaaacaaaatcccactacttttctctctcagacataggagat
atgtacgcacctactgcttgattattcaaatgaatgaaaagtctggcctt
tatgatgcttcgtagtttctagattacttaatctggttagagagatttta
tttcttgaatttgaaagttttatattttcaggtttgcttattaaagcat
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_15715092_15716139
seq2: B6Ng01-335N14.g_71_1119 (reverse)

seq1  ATGCTTT-ATAAGCAAACCTGAAAATATAAACTTTTCAAATCCATG-AAT  48
      ||||||| |||||||||||||||||||||||  |||||||| || | |||
seq2  ATGCTTTAATAAGCAAACCTGAAAATATAAAACTTTCAAATTCAAGAAAT  50

seq1  AAAATCCTCTCTACCCAGA-TAAGTTATCTAGAAACTACGAAGCATCAT-  96
      ||||| ||||||| ||||| ||||| ||||||||||||||||||||||| 
seq2  AAAAT-CTCTCTAACCAGATTAAGTAATCTAGAAACTACGAAGCATCATA  99

seq1  AAGGCCAGACTTTTCATTCATTTGAATAATCAAGCAGTAGGTGCGTACAT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGACTTTTCATTCATTTGAATAATCAAGCAGTAGGTGCGTACAT  149

seq1  ATCTCCTATGTCTGGAGAGAGAAAAGTAGTGGGATTTTGTTTTTCACAGA  196
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTATGTCT-GAGAGAGAAAAGTAGTGGGATTTTGTTTTTCACAGA  198

seq1  CTTATAGTTTGAGGACATTTTAGAGATATTTATATATCTTAAATGAAAAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGTTTGAGGACATTTTAGAGATATTTATATATCTTAAATGAAAAA  248

seq1  AAATGTTCTATGTTCCTTAATTTTTCCTGAATTTATTCATTTTTATTATA  296
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAATGTTCTATGTT-CTTAATTTTTCCTGAATTTATTCATTTTTATTATA  297

seq1  TTTCTCCTAGAAAATGCAAGATTATGTTTGCATATTTATTTGACAGAAGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTAGAAAATGCAAGATTATGTTTGCATATTTATTTGACAGAAGG  347

seq1  TTTTCAATAGAAGATTGGAAAACAAAAAATTAGTAGTATTGTCACAGAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATAGAAGATTGGAAAACAAAAAATTAGTAGTATTGTCACAGAAT  397

seq1  GTAAAAACAGGAGGCAAACGAGAAAAAAATTAAAATGTGGGTAAACTCAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAACAGGAGGCAAACGAGAAAAAAATTAAAATGTGGGTAAACTCAG  447

seq1  TAAGGGAAATTAAGGGAAGGACCAAAAACTGGAACTGGGAAGTCAGTCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGAAATTAAGGGAAGGACCAAAAACTGGAACTGGGAAGTCAGTCTT  497

seq1  CTCATTGCTGCCATGAAGATTTCTGGTATTTGAATCTTTCAACATCCCTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGCTGCCATGAAGATTTCTGGTATTTGAATCTTTCAACATCCCTG  547

seq1  AATTATGCTTCTCAACTGTGATTAAAGCTTGGTGGCTCCCAGGGTAGGTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGCTTCTCAACTGTGATTAAAGCTTGGTGGCTCCCAGGGTAGGTC  597

seq1  ACACCCAAAGCCTCAGGGCCAGGCCTGGAAGGAGAGTGTGGAAACAAGTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAAAGCCTCAGGGCCAGGCCTGGAAGGAGAGTGTGGAAACAAGTC  647

seq1  TATCTCTGAGAACCTGGACCAATGGCTGAATCTGCCTTCAAGGCAAGATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTGAGAACCTGGACCAATGGCTGAATCTGCCTTCAAGGCAAGATT  697

seq1  CAGCACAGGATTAGATACCAGCCTTGAACAACATGGAAATGCATTTGCCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAGGATTAGATACCAGCCTTGAACAACATGGAAATGCATTTGCCA  747

seq1  GAAGTTATCTGCCTCCAGGTGTTAAATATGTTTAGTTATGTGATAGTGCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTATCTGCCTCCAGGTGTTAAATATGTTTAGTTATGTGATAGTGCT  797

seq1  CTTTATGAAATACGGTAGCCATACTCCAGTTACTTCTCCCAGCAATTTTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGAAATACGGTAGCCATACTCCAGTTACTTCTCCCAGCAATTTTG  847

seq1  AACAGTTGGTCTCTTTTATTTTGGATGGTACTACTTCCCATTGTCATCTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTGGTCTCTTTTATTTTGGATGGTACTACTTCCCATTGTCATCTG  897

seq1  GTAATTTACTTCACATTTGATTTAATCTTTTAACATAAACCACAGTATTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTACTTCACATTTGATTTAATCTTTTAACATAAACCACAGTATTC  947

seq1  CAGACTCAAGAATGGTCTCTGTCTTGTGAACTCACATCCAAGGAGCCATA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCAAGAATGGTCTCTGTCTTGTGAACTCACATCCAAGGAGCCATA  997

seq1  GCACCTGATTGGGATCGCAAATTAATGAATGCTCCAAAACACATAAGAAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGATTGGGATCGCAAATTAATGAATGCTCCAAAACACATAAGAAT  1047

seq1  TC  1048
      ||
seq2  TC  1049


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