BAC Information

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BAC

Clone NameB6Ng01-336G24
Chromosome6 (Build37)
Map Location 18,256,154 - 18,375,175
singlet/doubletdoublet
Overlap geneCftr, Cttnbp2
Upstream geneCav1, Met, Capza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751
Downstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336G24.bB6Ng01-336G24.g
ACCGA121359GA121360
length1,1681,176
definitionB6Ng01-336G24.b B6Ng01-336G24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,374,019 - 18,375,175)(18,256,154 - 18,257,335)
sequence
gaattcacatcagcactgttaattctaagtgtgttctccagtattccgga
ggcagccttcagtgtctagagtcattgctcgtatgtgtctgccatgcgtc
tcagcagcctggcttcagtttgggaactcacatcagagctactttttgct
gttaccttctggttatattctgtgtcccactgaacagatctctcctgctg
gcttgggtttccgtgtccgtcaccttcatgttaccaggccatctgtaagc
tccgtgcttggaggatgtcactgtcacagtacagaagcatggatagcttt
ggacaaaaaaaaacaaaaaaacaaaaaaaaacaaaaccctgtggaaattc
aggaatcagtaaatttaaagattgcgtcacacagatatgtcagcgtgtta
cttaaaaaaaaaaaaagtaataacttatgtaagccaaatgctgaaagaaa
aatgaactccccaaaggcaaatccttcactttgtccacattctatctctg
tgttgaactaatcacaaagtcgcagtcgcagcatggcctccttttcttct
tgagtgtgtttctgtgtagctgtgtcctcagaagccagctcctacccaaa
gagacagcctcttccatccttctctcaaggcagcccttttcccagccccc
tgctcctttttatagaggaagcacacagtgctcggctgtctatgctattt
ataatcattttcttgagtgaataaaaaaaaaaatcacagaatgattcagc
agcctcatgtgtttttttggggtttttttttttgttttttttttttgttt
ttttttttttttgtttgtttgttttttgtcaaggcaaaaaaccatttttg
aaatcacaaatactatgtaatgtataccaagtacggtataacatttaacc
taacaaatcaaacctgttccaaggacaactcctgttaaaagttggtaaga
aggatcctgaactaggtttgacattttgtaaatggacaattttatgtttt
cataattttgagactaagtttagttttagttcatatgaaagtgatagcaa
gcaatatgtaacagaagtctggaatgaaaataatgacacgtcaatatgaa
attgcttggatcatgcaatgttatcttggatttaataccttggctcaaga
agcccttgcaggtgatgc
gaattctgcgtggtgtatatttcttaaagtgttttgatagtgttctccca
aagcacaatctgtaacagcagcctgggtagttccttgtgcaggcttccta
gtcttgcttaagtacttgatctccgagggagtgatagcagcctgtagata
aatgctttgcaagatgtggaagatgcttctgagatcataagctctcggaa
gcaggacatagtggaattgaaagttgaagtgcagtgatgttttccctttg
gagtctgagtaggaagaagtatgtcaggtcaatctagattcttataaagg
gcagtgtttgattcaggcagtacagcatctcgaacatcgccatttagtgc
tattctgtctgtgttactgcacatgctgatttcttgtgtagaggagaaac
ggcaatggttgcgggcaacatgacccaaatgtgaaccaagagatgctgaa
gccagaagaattgcagtatttctgctgctgttggcccttttctctgagac
ttttcctccttttgtgctactagacactaaatccaacccactaagatggc
tctttgaagcacttctgtatttttaacacaaaattaacattccgggacta
tcaccaggtagaccaactacaaagctagaccaagaaaatgcttgtacttc
ttgataaatgatcttcacagaacatttgctcctttcaagtggtgagacaa
tagatactgtaaccaccaaactgatgctttcaatttgtttctatggtgtg
ccattttttttcaaatgcttcatcttggctgaagttgtggaaacactgtg
tgttcaaaaacacaaaagggattgtcagatggcctaaagaaaaagaaacg
ctaggagtacaaggttcctgaggtgagagcactagtcgagtaaaaatgct
aaggccagtggaagggtgtggttgtctgagagcactgctgttggacttgc
ccaggtcctgtgctgccagttgaactaaagcaggtaggctttgccttggt
ttgctcttgttcgaacacattggcctacagaagcgtcactctaaacttct
atctcttgctcatcatcgtagctgcctacacaatagaagggctccgtctt
cctcacttagctctgcctagggagctaactttatgccagccaggatacct
ggcatggtcagagctggaaatctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18374019_18375175
seq2: B6Ng01-336G24.b_44_1211 (reverse)

seq1  GCATCACCTGGAAAGGGCTCCCTGAGC--AGGTATTAAATCC-AGATAAC  47
      ||||||||| | ||||||| | |||||  ||||||||||||| |||||||
seq2  GCATCACCT-GCAAGGGCTTCTTGAGCCAAGGTATTAAATCCAAGATAAC  49

seq1  A-TGCATGA-CCAAGCA--TTCATATTGACGTGTCAATTATTTCATT-CA  92
      | ||||||| |||||||  ||||||||||||||||| |  ||||||| ||
seq2  ATTGCATGATCCAAGCAATTTCATATTGACGTGTCATTATTTTCATTCCA  99

seq1  GACCTTCTG-TACATTATTGGCTTGCTATCACTTTCATATGACTAAAAAC  141
      || |||||| |||| |||| ||||||||||||||||||||||   |||||
seq2  GA-CTTCTGTTACA-TATT-GCTTGCTATCACTTTCATATGAACTAAAAC  146

seq1  TAAACTTTAGTCTCAAAATTTATGAAAACATAAAATTGTCCATTTACAAA  191
      ||||| |||||||||||| |||||||||||||||||||||||||||||||
seq2  TAAAC-TTAGTCTCAAAA-TTATGAAAACATAAAATTGTCCATTTACAAA  194

seq1  TGTTCAAACCTAGTTCAGGATCCTTCTTACCAACTTTT-ACAGGAGTTGT  240
         ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATGTCAAACCTAGTTCAGGATCCTTCTTACCAACTTTTAACAGGAGTTGT  244

seq1  CCTTGGAACAGGTTTGATTTGTTAGGTTAAATGTTATACCGTACTTGGTA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAACAGGTTTGATTTGTTAGGTTAAATGTTATACCGTACTTGGTA  294

seq1  TACATTACATAGTATTTGTGATT--CAAAATGG-TTTTTGCCTTGACAAA  337
      |||||||||||||||||||||||   ||||||| ||||||||||||||||
seq2  TACATTACATAGTATTTGTGATTTCAAAAATGGTTTTTTGCCTTGACAAA  344

seq1  AAACAAACAAAC--AAAAAAAAAAAAACAAAAAAAAAAA--CAAAAAAAA  383
      ||||||||||||  |||||||||||||||||||||||||   ||||||||
seq2  AAACAAACAAACAAAAAAAAAAAAAAACAAAAAAAAAAAACAAAAAAAAA  394

seq1  AACCCCAAAAAAACACATGAGGCTGCTGAATCATTCTGTGATTTTTTTTT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAAAAAAACACATGAGGCTGCTGAATCATTCTGTGATTTTTTTTT  444

seq1  TTATTCACTCAAGAAAATGATTATAAATAGCATAGACAGCCGAGCACTGT  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCACTCAAGAAAATGATTATAAATAGCATAGACAGCCGAGCACTGT  494

seq1  GTGCTTCCTCTATAAAAAGGAGCAGGGGGCTGGGAAAAGGGCTGCCTTGA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCCTCTATAAAAAGGAGCAGGGGGCTGGGAAAAGGGCTGCCTTGA  544

seq1  GAGAAGGATGGAAGAGGCTGTCTCTTTGGGTAGGAGCTGGCTTCTGAGGA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGATGGAAGAGGCTGTCTCTTTGGGTAGGAGCTGGCTTCTGAGGA  594

seq1  CACAGCTACACAGAAACACACTCAAGAAGAAAAGGAGGCCATGCTGCGAC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTACACAGAAACACACTCAAGAAGAAAAGGAGGCCATGCTGCGAC  644

seq1  TGCGACTTTGTGATTAGTTCAACACAGAGATAGAATGTGGACAAAGTGAA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGACTTTGTGATTAGTTCAACACAGAGATAGAATGTGGACAAAGTGAA  694

seq1  GGATTTGCCTTTGGGGAGTTCATTTTTCTTTCAGCATTTGGCTTACATAA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGCCTTTGGGGAGTTCATTTTTCTTTCAGCATTTGGCTTACATAA  744

seq1  GTTATTACTTTTTTTTTTTTTAAGTAACACGCTGACATATCTGTGTGACG  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTACTTTTTTTTTTTTTAAGTAACACGCTGACATATCTGTGTGACG  794

seq1  CAATCTTTAAATTTACTGATTCCTGAATTTCCACAGGGTTTTGTTTTTTT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTTAAATTTACTGATTCCTGAATTTCCACAGGGTTTTGTTTTTTT  844

seq1  TTGTTTTTTTGTTTTTTTTTGTCCAAAGCTATCCATGCTTCTGTACTGTG  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTTGTTTTTTTTTGTCCAAAGCTATCCATGCTTCTGTACTGTG  894

seq1  ACAGTGACATCCTCCAAGCACGGAGCTTACAGATGGCCTGGTAACATGAA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGACATCCTCCAAGCACGGAGCTTACAGATGGCCTGGTAACATGAA  944

seq1  GGTGACGGACACGGAAACCCAAGCCAGCAGGAGAGATCTGTTCAGTGGGA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACGGACACGGAAACCCAAGCCAGCAGGAGAGATCTGTTCAGTGGGA  994

seq1  CACAGAATATAACCAGAAGGTAACAGCAAAAAGTAGCTCTGATGTGAGTT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATATAACCAGAAGGTAACAGCAAAAAGTAGCTCTGATGTGAGTT  1044

seq1  CCCAAACTGAAGCCAGGCTGCTGAGACGCATGGCAGACACATACGAGCAA  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACTGAAGCCAGGCTGCTGAGACGCATGGCAGACACATACGAGCAA  1094

seq1  TGACTCTAGACACTGAAGGCTGCCTCCGGAATACTGGAGAACACACTTAG  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTAGACACTGAAGGCTGCCTCCGGAATACTGGAGAACACACTTAG  1144

seq1  AATTAACAGTGCTGATGTGAATTC  1157
      ||||||||||||||||||||||||
seq2  AATTAACAGTGCTGATGTGAATTC  1168

seq1: chr6_18256154_18257335
seq2: B6Ng01-336G24.g_64_1239

seq1  GAATTCTGCGTGGTGTATATTTCTTAAAGTGTTTTGATAGTGTTCTCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCGTGGTGTATATTTCTTAAAGTGTTTTGATAGTGTTCTCCCA  50

seq1  AAGCACAATCTGTAACAGCAGCCTGGGTAGTTCCTTGTGCAGGCTTCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAATCTGTAACAGCAGCCTGGGTAGTTCCTTGTGCAGGCTTCCTA  100

seq1  GTCTTGCTTAAGTACTTGATCTCCGAGGGAGTGATAGCAGCCTGTAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCTTAAGTACTTGATCTCCGAGGGAGTGATAGCAGCCTGTAGATA  150

seq1  AATGCTTTGCAAGATGTGGAAGATGCTTCTGAGATCATAAGCTCTCGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTTGCAAGATGTGGAAGATGCTTCTGAGATCATAAGCTCTCGGAA  200

seq1  GCAGGACATAGTGGAATTGAAAGTTGAAGTGCAGTGATGTTTTCCCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACATAGTGGAATTGAAAGTTGAAGTGCAGTGATGTTTTCCCTTTG  250

seq1  GAGTCTGAGTAGGAAGAAGTATGTCAGGTCAATCTAGATTCTTATAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGAGTAGGAAGAAGTATGTCAGGTCAATCTAGATTCTTATAAAGG  300

seq1  GCAGTGTTTGATTCAGGCAGTACAGCATCTCGAACATCGCCATTTAGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTTTGATTCAGGCAGTACAGCATCTCGAACATCGCCATTTAGTGC  350

seq1  TATTCTGTCTGTGTTACTGCACATGCTGATTTCTTGTGTAGAGGAGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGTCTGTGTTACTGCACATGCTGATTTCTTGTGTAGAGGAGAAAC  400

seq1  GGCAATGGTTGCGGGCAACATGACCCAAATGTGAACCAAGAGATGCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGGTTGCGGGCAACATGACCCAAATGTGAACCAAGAGATGCTGAA  450

seq1  GCCAGAAGAATTGCAGTATTTCTGCTGCTGTTGGCCCTTTTCTCTGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAGAATTGCAGTATTTCTGCTGCTGTTGGCCCTTTTCTCTGAGAC  500

seq1  TTTTCCTCCTTTTGTGCTACTAGACACTAAATCCAACCCACTAAGATGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCCTTTTGTGCTACTAGACACTAAATCCAACCCACTAAGATGGC  550

seq1  TCTTTGAAGCACTTCTGTATTTTTAACACAAAATTAACATTCCGGGACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAAGCACTTCTGTATTTTTAACACAAAATTAACATTCCGGGACTA  600

seq1  TCACCAGGTAGACCAACTACAAAGCTAGACCAAGAAAATGCTTGTACTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGGTAGACCAACTACAAAGCTAGACCAAGAAAATGCTTGTACTTC  650

seq1  TTGATAAATGATCTTCACAGAACATTTGCTCCTTTCAAGTGGTGAGACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAATGATCTTCACAGAACATTTGCTCCTTTCAAGTGGTGAGACAA  700

seq1  TAGATACTGTAACCACCAAACTGATGCTTTCAATTTGTTTCTATGGTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACTGTAACCACCAAACTGATGCTTTCAATTTGTTTCTATGGTGTG  750

seq1  CCA-TTTTTTTCAAATGCTTCATCTTGGCTGAAGTTGTGGAAACACTGTG  799
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTTTTCAAATGCTTCATCTTGGCTGAAGTTGTGGAAACACTGTG  800

seq1  TGTTCAAAAACACAAAAGGGATTGTCAGATGGCCTAAAGAAAAAGAAACG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAAAAACACAAAAGGGATTGTCAGATGGCCTAAAGAAAAAGAAACG  850

seq1  CTAGGAGTACAAGGTTCCTGAGGTGAGAGCACTAGTCGAGTAAAAATGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGTACAAGGTTCCTGAGGTGAGAGCACTAGTCGAGTAAAAATGCT  900

seq1  AAGGCCAGTGGAAGGGTGTGGTTGTCTGAGAAGCACTGCTGTTGGACTTG  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAGGCCAGTGGAAGGGTGTGGTTGTCTGAG-AGCACTGCTGTTGGACTTG  949

seq1  CCCAGGTCCTGTGCTGCCAGTTGAACTAAAGCAGGGTAGGCTTTGCCTTG  999
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCCAGGTCCTGTGCTGCCAGTTGAACTAAAGCA-GGTAGGCTTTGCCTTG  998

seq1  G-TTGCTCTTGTTCGAACACATTGGCCTACAAGAAGCGTCAACCTCTAAA  1048
      | |||||||||||||||||||||||||||| ||||||||||  |||| ||
seq2  GTTTGCTCTTGTTCGAACACATTGGCCTAC-AGAAGCGTCA--CTCT-AA  1044

seq1  ACTTCTATCCTCTTGCTCATCATCGTAGCTG-CTACACAATAGAAGGGCT  1097
      |||||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  ACTTCTAT-CTCTTGCTCATCATCGTAGCTGCCTACACAATAGAAGGGCT  1093

seq1  CCGTCTTCCTCAC-TAGCTCTGCTTA-GGAGCTTAC-TTATGCCAGGCAC  1144
      ||||||||||||| ||||||||| || |||||| || |||||||||   |
seq2  CCGTCTTCCTCACTTAGCTCTGCCTAGGGAGCTAACTTTATGCCAG--CC  1141

seq1  AGAGTACACTGCAGTGGGCCAGAGCTGGAAAATCTCCC  1182
      ||  |||   |||   || ||||||||| |||||||||
seq2  AGGATACCTGGCA--TGGTCAGAGCTGG-AAATCTCCC  1176