BAC Information

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BAC

Clone NameB6Ng01-336H20
Chromosome6 (Build37)
Map Location 126,012,514 - 126,120,012
singlet/doubletdoublet
Overlap geneNtf3, LOC100043565
Upstream geneAcrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b
Downstream geneLOC667427, LOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336H20.bB6Ng01-336H20.g
ACCGA121395GA121396
length1,1111,163
definitionB6Ng01-336H20.b B6Ng01-336H20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,118,899 - 126,120,012)(126,012,514 - 126,013,675)
sequence
tgtcgtgactggcaaagcaggagagtttattgtgactccgagatccacct
gtgtggcaggcatacacaccttcactctatcattagggataatttttttg
aagcctaattataaatatgcgttctatttcacaaaatgagttgattcatt
gttgttccatgcaatacattatatttctcagcataagcccaagaacataa
ttaaggataacaatagggcagtaatccactaggcaatctgttaaccgtgg
aggaagtgctggaatttcctcttgaatgggaagtgattctgcctcagagg
tggggaatgaatagaatgagatttttaaactctttgtctctctctctcat
gaagtccacattaggaagttaaataaactgtatgtatgtccactgcctca
ttctgctcacttcttactgtctgggaagacaaatacatatgtgaagacac
gtgcatgcacacaggcacacagttatattagtaaaatatacatggaaccc
aactaataaatgcttttctctctttctttctttctttctttctttctttc
tttctttctttcttttcttttctttttcttttttctttttttttttttta
gtttttcgagacagagtttctttgtgtagccctggctgtcctggaactca
ctttgtagaccaggctggcctctaactcagaaatccacctgcctctgcct
cctgagtgctgggattaaaggcgtgcgccaccacgcccggctaatgcttt
tctttctaaagatcagaatccctcaccagtagactgaccaagatgtcctt
gtaaggcctggggcttgcactgtgacaggtgttatgctgtaagtttcaaa
ttactggatttacttagtcctcctaatgtacctgggagactcctactact
ttaccaactctcgatggattttgatcagctaggaaacctgtccgaaaaca
atgttgagaggttgagagcaatgtgaacatttgtcactctacaaacaacc
cttccaaaaagatgtagactgtgactaacttatttatttttatgtggcat
tgtgttttgctgcatgtatgtcctgtatgagggcatcaggattcatctag
aactaagagtt
gaattccttcatgttgaatggcttagccaaagagtcagggattgagcaat
gaaaatacagttctatcacaagcacatactagtcatgaccctggggatgc
aatgataaagtaatgcttcttgtggtggtttgaacaggtatggctcccat
agattcatgtgtttgaatgcttgtccatagggaggtgtggccttgttgga
gtagatgtgggcttgttggaggaagtgtatcagtaggggtgtgctttgag
gtttcaaatgctcaagccaggcccagtgtccctttctcttcctgctacct
aggaagccaattgtagaaactctcagctacctctctaacatcaagtgtgc
ctgcatgctaccatgctccccaacatgctgacaatgaactaaacctctga
aactataagccagccccaattaaatgttttcctttttaagagttgctgtg
gtcatggtgtcttctcataacaataaagccctaactaagacatctcttat
cctactcaggagggcaagacaaagaacagtagaaaagaatacagtaacag
tgattttcttaagtcagcccattgcatgaagatacacattatataagaat
gaaaaattagggatatatggataggtaaacagtgtaagaaacagtgagta
aatattaaaagaaaatttggtccctcgagggcatgaacaaaatgttgaga
aggggcacacacagggagctaacattttgcccctgagctgactagtagct
agggaaaatatttaattgattttacatccttctcattgtgtttggaatat
cctgatatagattgaatatatgagattcaaatttagaaacacaatattaa
atatgtaccaagacaatatcaagggcaccaattttatcagaaaaaaacat
atttttaagataaattttatcaaaaggaagatggatactacatgtcagta
ggagagacaacagacaaagacaaagaatggccatgcacatgtgagtgatc
agagaatgtgtaattgggaaaagaacctgagaataaattatggggaataa
gtagataattcattttcacagcctgggtgattttaactcactctttcttt
gaaaccattcataagctagaaagaaagaaacgggtgaaaatattatattt
gaattactaatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_126118899_126120012
seq2: B6Ng01-336H20.b_57_1167 (reverse)

seq1  AACTC-TAGTTCTAGATGA--TCTGATGCCTTCATACA-GACATACATGC  46
      ||||| |||||||||||||   |||||||| ||||||| |||||||||||
seq2  AACTCTTAGTTCTAGATGAATCCTGATGCCCTCATACAGGACATACATGC  50

seq1  AGGCAAAACACCAATG-CACATAAAAATAAATAAGTTAGTCACAGTCTAA  95
      | |||||||| ||||| ||||||||||||||||||||||||||||||| |
seq2  A-GCAAAACA-CAATGCCACATAAAAATAAATAAGTTAGTCACAGTCT-A  97

seq1  CATCTTTTTTGGAAGGGTTGGTTTTGTAGAGTGACAAATGTTTCACATTG  145
      |||| |||||||||||||||  |||||||||||||||||| |||||||||
seq2  CATC-TTTTTGGAAGGGTTG--TTTGTAGAGTGACAAATG-TTCACATTG  143

seq1  CTCTCAACCTTCTCAACATTGTTTTCGGACAGGTTTCCTAGCTGATCAAA  195
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAACC-TCTCAACATTGTTTTCGGACAGGTTTCCTAGCTGATCAAA  192

seq1  ATCCATCGAGAGTTGGTAAAGTAGTAGGAGTCTCCCAGGTACATTAGGAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCGAGAGTTGGTAAAGTAGTAGGAGTCTCCCAGGTACATTAGGAG  242

seq1  GACTAAGTAAATCCAGTAATTTGAAACTTACAGCATAACACCTGTCACAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGTAAATCCAGTAATTTGAAACTTACAGCATAACACCTGTCACAG  292

seq1  TGCAAGCCCCAGGCCTTACAAGGACATCTTGGTCAGTCTACTGGTGAGGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCCCCAGGCCTTACAAGGACATCTTGGTCAGTCTACTGGTGAGGG  342

seq1  ATTCTGATCTTTAGAAAGAAAAGCATTAGCCGGGCGTGGTGGCGCACGCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGATCTTTAGAAAGAAAAGCATTAGCCGGGCGTGGTGGCGCACGCC  392

seq1  TTTAATCCCAGCACTCAGGAGGCAGAGGCAGGTGGATTTCTGAGTTAGAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCCAGCACTCAGGAGGCAGAGGCAGGTGGATTTCTGAGTTAGAG  442

seq1  GCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAAAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAAAG  492

seq1  AAACTCTGTCTCGAAAAACTAAAAAAAAAAAAAAGAAAAAAGAAAAAGAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTGTCTCGAAAAACTAAAAAAAAAAAAAAGAAAAAAGAAAAAGAA  542

seq1  AAGAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAG  592

seq1  AGAAAAGCATTTATTAGTTGGGTTCCATGTATATTTTACTAATATAACTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGCATTTATTAGTTGGGTTCCATGTATATTTTACTAATATAACTG  642

seq1  TGTGCCTGTGTGCATGCACGTGTCTTCACATATGTATTTGTCTTCCCAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTGTGTGCATGCACGTGTCTTCACATATGTATTTGTCTTCCCAGA  692

seq1  CAGTAAGAAGTGAGCAGAATGAGGCAGTGGACATACATACAGTTTATTTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGAAGTGAGCAGAATGAGGCAGTGGACATACATACAGTTTATTTA  742

seq1  ACTTCCTAATGTGGACTTCATGAGAGAGAGAGACAAAGAGTTTAAAAATC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTAATGTGGACTTCATGAGAGAGAGAGACAAAGAGTTTAAAAATC  792

seq1  TCATTCTATTCATTCCCCACCTCTGAGGCAGAATCACTTCCCATTCAAGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTATTCATTCCCCACCTCTGAGGCAGAATCACTTCCCATTCAAGA  842

seq1  GGAAATTCCAGCACTTCCTCCACGGTTAACAGATTGCCTAGTGGATTACT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTCCAGCACTTCCTCCACGGTTAACAGATTGCCTAGTGGATTACT  892

seq1  GCCCTATTGTTATCCTTAATTATGTTCTTGGGCTTATGCTGAGAAATATA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTATTGTTATCCTTAATTATGTTCTTGGGCTTATGCTGAGAAATATA  942

seq1  ATGTATTGCATGGAACAACAATGAATCAACTCATTTTGTGAAATAGAACG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTGCATGGAACAACAATGAATCAACTCATTTTGTGAAATAGAACG  992

seq1  CATATTTATAATTAGGCTTCAAAAAAATTATCCCTAATGATAGAGTGAAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTATAATTAGGCTTCAAAAAAATTATCCCTAATGATAGAGTGAAG  1042

seq1  GTGTGTATGCCTGCCACACAGGTGGATCTCGGAGTCACAATAAACTCTCC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATGCCTGCCACACAGGTGGATCTCGGAGTCACAATAAACTCTCC  1092

seq1  TGCTTTGCCAGTCACGACA  1114
      |||||||||||||||||||
seq2  TGCTTTGCCAGTCACGACA  1111

seq1: chr6_126012514_126013675
seq2: B6Ng01-336H20.g_68_1230

seq1  GAATTCCTTCATGTTGAATGGCTTAGCCAAAGAGTCAGGGATTGAGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCATGTTGAATGGCTTAGCCAAAGAGTCAGGGATTGAGCAAT  50

seq1  GAAAATACAGTTCTATCACAAGCACATACTAGTCATGACCCTGGGGATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATACAGTTCTATCACAAGCACATACTAGTCATGACCCTGGGGATGC  100

seq1  AATGATAAAGTAATGCTTCTTGTGGTGGTTTGAACAGGTATGGCTCCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAAAGTAATGCTTCTTGTGGTGGTTTGAACAGGTATGGCTCCCAT  150

seq1  AGATTCATGTGTTTGAATGCTTGTCCATAGGGAGGTGTGGCCTTGTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCATGTGTTTGAATGCTTGTCCATAGGGAGGTGTGGCCTTGTTGGA  200

seq1  GTAGATGTGGGCTTGTTGGAGGAAGTGTATCAGTAGGGGTGTGCTTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGTGGGCTTGTTGGAGGAAGTGTATCAGTAGGGGTGTGCTTTGAG  250

seq1  GTTTCAAATGCTCAAGCCAGGCCCAGTGTCCCTTTCTCTTCCTGCTACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAATGCTCAAGCCAGGCCCAGTGTCCCTTTCTCTTCCTGCTACCT  300

seq1  AGGAAGCCAATTGTAGAAACTCTCAGCTACCTCTCTAACATCAAGTGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCCAATTGTAGAAACTCTCAGCTACCTCTCTAACATCAAGTGTGC  350

seq1  CTGCATGCTACCATGCTCCCCAACATGCTGACAATGAACTAAACCTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGCTACCATGCTCCCCAACATGCTGACAATGAACTAAACCTCTGA  400

seq1  AACTATAAGCCAGCCCCAATTAAATGTTTTCCTTTTTAAGAGTTGCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATAAGCCAGCCCCAATTAAATGTTTTCCTTTTTAAGAGTTGCTGTG  450

seq1  GTCATGGTGTCTTCTCATAACAATAAAGCCCTAACTAAGACATCTCTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGTGTCTTCTCATAACAATAAAGCCCTAACTAAGACATCTCTTAT  500

seq1  CCTACTCAGGAGGGCAAGACAAAGAACAGTAGAAAAGAATACAGTAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCAGGAGGGCAAGACAAAGAACAGTAGAAAAGAATACAGTAACAG  550

seq1  TGATTTTCTTAAGTCAGCCCATTGCATGAAGATACACATTATATAAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTCTTAAGTCAGCCCATTGCATGAAGATACACATTATATAAGAAT  600

seq1  GAAAAATTAGGGATATATGGATAGGTAAACAGTGTAAGAAACAGTGAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTAGGGATATATGGATAGGTAAACAGTGTAAGAAACAGTGAGTA  650

seq1  AATATTAAAAGAAAATTTGGTCCCTCGAGGGCATGAACAAAATGTTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAAAAGAAAATTTGGTCCCTCGAGGGCATGAACAAAATGTTGAGA  700

seq1  AGGGGCACACACAGGGAGCTAACATTTTGCCCCTGAGCTGACTAGTAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCACACACAGGGAGCTAACATTTTGCCCCTGAGCTGACTAGTAGCT  750

seq1  AGGGAAAATATTTAATTGATTTTACATCCTTCTCATTGTGTTTGGAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAATATTTAATTGATTTTACATCCTTCTCATTGTGTTTGGAATAT  800

seq1  CCTGATATAGATTGAATATATGAGATTCAAATTTAGAAACACAATATTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATATAGATTGAATATATGAGATTCAAATTTAGAAACACAATATTAA  850

seq1  ATATGTACCAAGACAATATCAAGGGCACCAATTTTATCAGAAAAAAACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTACCAAGACAATATCAAGGGCACCAATTTTATCAGAAAAAAACAT  900

seq1  ATTTTTAAGATAAATTTTATCAAAAGGAAGATGGATACTACATGTCAGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAGATAAATTTTATCAAAAGGAAGATGGATACTACATGTCAGTA  950

seq1  GGAGAGACAACAGACAAAGACAAAAGAATGGCCATGCACATGTGAGTGAT  1000
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGAGAGACAACAGACAAAGAC-AAAGAATGGCCATGCACATGTGAGTGAT  999

seq1  CAGAGAAATGTGTAATT-GGAAAAGAA-CTGAGAATAAATTAT-GGGAAT  1047
      ||||| ||||||||||| ||||||||| ||||||||||||||| ||||||
seq2  CAGAG-AATGTGTAATTGGGAAAAGAACCTGAGAATAAATTATGGGGAAT  1048

seq1  AAGTAGATAAATCAATTTTCACAGC--TGGTGATTTTAACTCACTC-TTC  1094
      |||||||||| || |||||||||||   |||||||||||||||||| |||
seq2  AAGTAGATAATTC-ATTTTCACAGCCTGGGTGATTTTAACTCACTCTTTC  1097

seq1  TTTGAAACCAATCAATAAGCTAGAAAGAAAGAAACGGGGTGAAATATTAT  1144
      |||||||||| || ||||||||||||||||||||||||   |||||||||
seq2  TTTGAAACCATTC-ATAAGCTAGAAAGAAAGAAACGGGTGAAAATATTAT  1146

seq1  ATTTGAATTACCTAATTA  1162
      |||||||||| |||||||
seq2  ATTTGAATTA-CTAATTA  1163