BAC Information

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BAC

Clone NameB6Ng01-336J20
Chromosome6 (Build37)
Map Location 59,417,022 - 59,417,760
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626828, LOC666954, Abcg2, Herc3, Nap1l5, D430015B01Rik, Tigd2, Gprin3
Downstream geneEG634166, EG627108, EG434019, LOC671300, EG627178, LOC100041706, LOC100041717, A530053G22Rik, LOC667066
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336J20.bB6Ng01-336J20.g
ACCGA121485GA121486
length1,1611,227
definitionB6Ng01-336J20.b B6Ng01-336J20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggactaggcgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggtttctgttagtagg
attcttacatttacctttcgccatttggcaatctctggagttagttgtta
tagttgtctttgttaagagattgttcctctgttgattttgttaccctcaa
tcagcaggcatgggagacaagctctctcctctgagtttcagtggtcagag
cagtctctgcaggcaagctctcctctttcagggaaggtgtacagttatct
ggtgttcggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagttgtgttgctttggccaggaaggttgccggttgtctggagt
cgaagatgtcacagcctcagaagctctgtggctctcgccaggaaggtggc
cagttgtctggagccgaagatggcgctgctccagaagctctgtgactctc
gcccgtaccagaaacggctggcccctgtattccacaaggacacccgtgca
gcctgccctccgaggagttccagagccaagaaggctcccgctggtgcctg
tgacacaaacctctcaggccaggcagacccccgtgctctcaccaggaagg
tggccggttgtctggagccgaagatggcaccgccccagaagctctgcgac
tctcgcctgtaccagaaatggctggcccctgtattccacacggtcaccca
tgcagcctgccctccgcggagtcccggagccaagaaaggctcccgccggc
gcctgtgacacaaacctctcaggccgggcagacccccgtgctctcaccag
gaaagtggccggctgtctggagctgaagatggcgccgcctctgcacccta
gtcttgtatttggatcagtgcccaggctaaaagggctgacatatacttgc
cagtgccctgctcatggcacaaagccatgctccactgtcttgtcagccag
aaaccacagcctctctggagactgactcttgttggcttcatttttgtctt
ctattttggttggggtgtgatttcattgtatgccttaaatatttccaaaa
ttgtttacatg

gaattcctgatttttccaagacttttatcatgaatggatgttagactttt
gacaaatgctgtctcagcatctaaagagatgatcatgtggtttttgtctt
tgagtttgtttatatactggattatgttgatggatttccatatattaaac
catccctgcatccctagaatgaaacccacttggtcaggatggatgatttt
tttgacatgttcttggattcagttagtgagaattttattgagtatttttg
catcgatattcataagggaatttggtctgaagttctctatttttgttggg
tctttgggtggtttaggtatcagagcaattgtggcttcatagaatgaaat
gaatagaacaccttctgcttctattttgtggaatagtttgtgaagaacta
gaattagatcttctttgaaagtctgatagaactctgcactaaacccatgt
ggtcctgggctttttttggttgggagactattaatgactgcttttatttc
tttaagggatataggactgtttagatcattaatcagatgctgatataact
ttgggaactggtatctgtctagaaatttgaccgtttaatccaggttctcc
agttttgttgagtatagccttttgtaaaaggatctgatggtgttttggat
ttcttcaggatctgttatatctctattttcatttctgattttgttaatta
ggaagctatccctgtgccttctagtgagtctggctaagggtttatccatc
ttgttgattttcacaaagaaccagctcctcctttggcggattctttgaat
agttgttcttgtttccacttgattgatttcaccactgagtttgattattt
cctgctgtctactcctcttggtgaatgtggttccttttgctctagagctt
ttaggtttgttgtcaagctgctagtgtgtgcagctatgagttttcctttt
agaaatgctttcactatgtcccataattttggctatgttgtggcttaatt
ttcattaaactctaaaaagtctttaatttctttctttatcttccttgacc
cacgtattcaattgaagaagagtggttttttcaaggtccacattgaatgt
gcttcctattatttaagttgttatttaagaatcagcctttagtcatgggg
aacttagatgcatggacaggcttcacattttgtattcggtgtagagccct
cgttttgctgatgacccactattagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_59417022_59417760
seq2: B6Ng01-336J20.b_469_1206

seq1  CCAGGAAGGTTGCCGGTTGTCTGGAGTCGAAGATGTCACAGCCTCAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAGGTTGCCGGTTGTCTGGAGTCGAAGATGTCACAGCCTCAGAAG  50

seq1  CTCTGTGGCTCTCGCCAGGAAGGTGGCCAGTTGTCTGGAGCCGAAGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGGCTCTCGCCAGGAAGGTGGCCAGTTGTCTGGAGCCGAAGATGG  100

seq1  CGCTGCTCCAGAAGCTCTGTGACTCTCGCCCGTACCAGAAACGGCTGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCTCCAGAAGCTCTGTGACTCTCGCCCGTACCAGAAACGGCTGGCC  150

seq1  CCTGTATTCCACAAGGACACCCGTGCAGCCTGCCCTCCGAGGAGTTCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATTCCACAAGGACACCCGTGCAGCCTGCCCTCCGAGGAGTTCCAG  200

seq1  AGCCAAGAAGGCTCCCGCTGGTGCCTGTGACACAAACCTCTCAGGCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGAAGGCTCCCGCTGGTGCCTGTGACACAAACCTCTCAGGCCAGG  250

seq1  CAGACCCCCGTGCTCTCACCAGGAAGGTGGCCGGTTGTCTGGAGCCGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCCCGTGCTCTCACCAGGAAGGTGGCCGGTTGTCTGGAGCCGAAG  300

seq1  ATGGCACCGCCCCAGAAGCTCTGCGACTCTCGCCTGTACCAGAAATGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACCGCCCCAGAAGCTCTGCGACTCTCGCCTGTACCAGAAATGGCT  350

seq1  GGCCCCTGTATTCCACACGGTCACCCATGCAGCCTGCCCTCCGCGGAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTGTATTCCACACGGTCACCCATGCAGCCTGCCCTCCGCGGAGTC  400

seq1  CCGGAGCCAAG-AAGGCTCCCGCCGGCGCCTGTGACACAAACCTCTCAGG  449
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGCCAAGAAAGGCTCCCGCCGGCGCCTGTGACACAAACCTCTCAGG  450

seq1  CCGGGCAGACCCCCGTGCTCTCACCAGGAAGGTGGCCGGCTGTCTGGAGC  499
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCGGGCAGACCCCCGTGCTCTCACCAGGAAAGTGGCCGGCTGTCTGGAGC  500

seq1  TGAAGATGGCGCCGCCTCTGCACCCTAGTCTTGTATTTGGATCAGTGCCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGAAGATGGCGCCGCCTCTGCACCCTAGTCTTGTATTTGGATCAGTGCCC  550

seq1  AGGCTAAAAGGGCTGACATATTACTTGCCAGTG-CCTGCTCATGGCACAA  598
      |||||||||||||||||||| |||||||||||| |||||||||||||| |
seq2  AGGCTAAAAGGGCTGACATA-TACTTGCCAGTGCCCTGCTCATGGCAC-A  598

seq1  AAGCCATGCTTCCACTGTCTTGTCAGCCAGAAACCACAGGCCTCTCT-GA  647
      ||||||||| |||||||||||||||||||||||||||| |||||||| ||
seq2  AAGCCATGC-TCCACTGTCTTGTCAGCCAGAAACCACA-GCCTCTCTGGA  646

seq1  GACTGACTTCTGTTGGCTCCATTTTTGTCTTCTATTTT-GTGTGGGTGTG  696
      ||||||||  |||||||| ||||||||||||||||||| ||  |||||||
seq2  GACTGACTCTTGTTGGCTTCATTTTTGTCTTCTATTTTGGTTGGGGTGTG  696

seq1  ATTTCATTGTCATGCTGTAAATATTCAAAAATTTTTTTACATG  739
      |||||||||| ||||  ||||||||   ||| || ||||||||
seq2  ATTTCATTGT-ATGCCTTAAATATTTCCAAAATTGTTTACATG  738


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