BAC Information

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BAC

Clone NameB6Ng01-337B05
Chromosome6 (Build37)1 (Build37)
Map Location 46,401,263 - 46,402,39475,965,971 - 75,966,505
singlet/doubletsingletsinglet
Overlap geneCntnap2
Upstream genenone
Downstream geneRbpsuh-rs3, LOC622745, LOC100041064, LOC100041078, A930035D04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337B05.bB6Ng01-337B05.g
ACCGA121810GA121811
length1,127824
definitionB6Ng01-337B05.b B6Ng01-337B05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(46,401,263 - 46,402,394)(75,965,971 - 75,966,505)
sequence
gaattcaggttttaggctacttttgagtggggagggaaacacagagggtc
atgtgcttagcaaatagctgccaaagttttagctcctttgggagaggaca
agatcacaagccttttcgatattgttgttaaaaagtttgatttgttattg
atgaacaaagagtacagcacacatcaagggttatttgatgatagggctaa
ttctgtgtgtaaaatacaattagagagcaaaatttcattaaagttgaatt
ccacatttactacctttacaaccagcaatgtggtctggagagaaattact
ttagttctttaggcatttgtttataaaaatagatttatttaattttatgt
gtatgaggttttacatacatgtatgtctatgtactgtgtatattccgagt
actcgtagaaacaagaaaagttgttggagctcatagaactggagttactg
atagttgtgagcagtcatgtgggtcctaggaagagaagctgggtcatctt
caagagcagaaaatgtccctaaccttgagctataaatccagtcccaggtt
tttgctttttaagccaagcaaaaaggaagaactcgtttgtcctaaggaaa
cattttattccacatgcctatggttctactaatatgatagcaaaaattct
ttttaatttatattttaagcaaataggtaaaaaataataaatgtttaaaa
tacaggattacattttggagtctgaacattctctttaggtttcaaatgcc
aattattttctatatgaagcaatcaccttatccctttataatgcagagca
gtgttcttgatttaatggctagttgctatgtcccctttgttatctctaca
attaaagaagctgtaaaaccagaccatgaaccagtatagatgcctgaacc
atgaataagtgatgaggcccctgtcaatagaccagctgctgggccagcac
ttgtgaggttgtctgaattattgatgccataccacagctcccatcaatgg
cagttcttctgaggagctcacaaagtctgtctgttaacatcagctgcaca
gctgtctttttgtactggtgtaatgaaatacttatatggacactctgatt
acttggatcgatggattattgtactga

gaattcattgctcagctctgaaccccatttttaatggggttatttgattt
tctagagtccaccattttgagttctttatatatattggatactagtcccc
tatctgatttaggttaggtaaagatcctttcccaatctgttggtggtata
tttgcccagaaacttaggatacccaagatataagatacaatttgctaaac
gcatgaaactcaagaagaacgaagaccaaagtgtggacactttgcccctt
cttagaattgggaacaaaacacccacggaaggagttacagagacaaaatt
tggagctgtgatgaaaggatggatcatctagagactgccatatccgggga
tccatcccataatcagcctccaaacgctgacaccattgcatacactagca
agattttgctgaaaggacccagatagagctgtctctggtgagactatgcc
agggcctagcaaacacagaagtggatgctcacagtcagctattggatgga
tcacagggcccccaatggaggagctagagaaagtacccaaggatctaaag
ggatctgcaaccctatggtggaacaatattatgaactaaccagtacccgg
gagctcttgactctagctgcatatatatcaaaagatggcctagttggcca
tcactggaaagagaggcccattggacttgcaaacattatatgccccagca
caggggaacgccagggccaaaaggtggaagtacgtggataggggagttgg
gggggaaggtatgggggacttttggggtaggccttggaatgtaatgagga
aaatacctataaaaagataaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_46401263_46402394
seq2: B6Ng01-337B05.b_47_1173 (reverse)

seq1  TCAGTACAATAATCAATTGGAATCAAGGTAATCAGAGTTGTCCATATAAG  50
      |||||||||||||| || |  ||| | |||||||||| ||||||||||| 
seq2  TCAGTACAATAATCCATCG--ATCCAAGTAATCAGAG-TGTCCATATAA-  46

seq1  GTATTTCATTACA-CAGTAACAAAAAGACAGCTGTGCCAGCCTGATGTTA  99
      ||||||||||||| |||| ||||||||||||||||| ||| |||||||||
seq2  GTATTTCATTACACCAGT-ACAAAAAGACAGCTGTG-CAG-CTGATGTTA  93

seq1  ACAGACAGACTTTGTGAGCCTCCTCAG-AGAACTGCCATTGATGGGAGCT  148
      |||||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  ACAGACAGACTTTGTGAG-CTCCTCAGAAGAACTGCCATTGATGGGAGCT  142

seq1  GTGGTATGGCATCAATAATTCAGACAACCTCACAAGTGCTGG-CCAGCAG  197
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTGGTATGGCATCAATAATTCAGACAACCTCACAAGTGCTGGCCCAGCAG  192

seq1  CTGGTCTATTGACAGGGGCCTCATCACTTATTCATGGTTCAGGCATCTAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTATTGACAGGGGCCTCATCACTTATTCATGGTTCAGGCATCTAT  242

seq1  ACTGGTTCATGGTCTGGTTTTACAGCTTCTTTAATTGTAGAGATAACAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTCATGGTCTGGTTTTACAGCTTCTTTAATTGTAGAGATAACAAA  292

seq1  GGGGACATAGCAACTAGCCATTAAATCAAGAACACTGCTCTGCATTATAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACATAGCAACTAGCCATTAAATCAAGAACACTGCTCTGCATTATAA  342

seq1  AGGGATAAGGTGATTGCTTCATATAGAAAATAATTGGCATTTGAAACCTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATAAGGTGATTGCTTCATATAGAAAATAATTGGCATTTGAAACCTA  392

seq1  AAGAGAATGTTCAGACTCCAAAATGTAATCCTGTATTTTAAACATTTATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATGTTCAGACTCCAAAATGTAATCCTGTATTTTAAACATTTATT  442

seq1  ATTTTTTACCTATTTGCTTAAAATATAAATTAAAAAGAATTTTTGCTATC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTACCTATTTGCTTAAAATATAAATTAAAAAGAATTTTTGCTATC  492

seq1  ATATTAGTAGAACCATAGGCATGTGGAATAAAATGTTTCCTTAGGACAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGTAGAACCATAGGCATGTGGAATAAAATGTTTCCTTAGGACAAA  542

seq1  CGAGTTCTTCCTTTTTGCTTGGCTTAAAAAGCAAAAACCTGGGACTGGAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTTCTTCCTTTTTGCTTGGCTTAAAAAGCAAAAACCTGGGACTGGAT  592

seq1  TTATAGCTCAAGGTTAGGGACATTTTCTGCTCTTGAAGATGACCCAGCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCTCAAGGTTAGGGACATTTTCTGCTCTTGAAGATGACCCAGCTT  642

seq1  CTCTTCCTAGGACCCACATGACTGCTCACAACTATCAGTAACTCCAGTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTAGGACCCACATGACTGCTCACAACTATCAGTAACTCCAGTTC  692

seq1  TATGAGCTCCAACAACTTTTCTTGTTTCTACGAGTACTCGGAATATACAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGCTCCAACAACTTTTCTTGTTTCTACGAGTACTCGGAATATACAC  742

seq1  AGTACATAGACATACATGTATGTAAAACCTCATACACATAAAATTAAATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATAGACATACATGTATGTAAAACCTCATACACATAAAATTAAATA  792

seq1  AATCTATTTTTATAAACAAATGCCTAAAGAACTAAAGTAATTTCTCTCCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATTTTTATAAACAAATGCCTAAAGAACTAAAGTAATTTCTCTCCA  842

seq1  GACCACATTGCTGGTTGTAAAGGTAGTAAATGTGGAATTCAACTTTAATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACATTGCTGGTTGTAAAGGTAGTAAATGTGGAATTCAACTTTAATG  892

seq1  AAATTTTGCTCTCTAATTGTATTTTACACACAGAATTAGCCCTATCATCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTGCTCTCTAATTGTATTTTACACACAGAATTAGCCCTATCATCA  942

seq1  AATAACCCTTGATGTGTGCTGTACTCTTTGTTCATCAATAACAAATCAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCCTTGATGTGTGCTGTACTCTTTGTTCATCAATAACAAATCAAA  992

seq1  CTTTTTAACAACAATATCGAAAAGGCTTGTGATCTTGTCCTCTCCCAAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAACAACAATATCGAAAAGGCTTGTGATCTTGTCCTCTCCCAAAG  1042

seq1  GAGCTAAAACTTTGGCAGCTATTTGCTAAGCACATGACCCTCTGTGTTTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAAAACTTTGGCAGCTATTTGCTAAGCACATGACCCTCTGTGTTTC  1092

seq1  CCTCCCCACTCAAAAGTAGCCTAAAACCTGAATTC  1132
      |||||||||||||||||||||||||||||||||||
seq2  CCTCCCCACTCAAAAGTAGCCTAAAACCTGAATTC  1127


seq1: chr1_75965971_75966505
seq2: B6Ng01-337B05.g_398_889 (reverse)

seq1  TTCTTTCTTTTTTTAAAAATTAGGTATTTTCCTCATTTACATTTTTTCCA  50
                                               || |||   
seq2  -----------------------------------------TTCTTTATC  9

seq1  TTTTTATTAGGTATTTAGCTCATTTACATTTCCAATG-CTATACCAAAAG  99
      |||||| |||||||||  |||| ||||| |||||| | |||  |||||||
seq2  TTTTTA-TAGGTATTTTCCTCA-TTACA-TTCCAAGGCCTACCCCAAAAG  56

seq1  TCCCCCATACCCCACCCACCCCCACTCCCCTACCCACCCATTCCCCCTTT  149
      |||||||||  ||  || |||| ||||||||| ||||  | | || | ||
seq2  TCCCCCATA--CCTTCCCCCCCAACTCCCCTATCCACGTACTTCCACCTT  104

seq1  TTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAA  199
      ||||||||||||||||||||| ||||||||||||| ||||||||||||||
seq2  TTGGCCCTGGCGTTCCCCTGTGCTGGGGCATATAATGTTTGCAAGTCCAA  154

seq1  TGGGCCTCTCTTTGCAGTGATGACCGACTAGGCCATCTTTTGATACATAT  249
      ||||||||||||| |||||||| || ||||||||||||||||||| ||||
seq2  TGGGCCTCTCTTTCCAGTGATGGCCAACTAGGCCATCTTTTGATATATAT  204

seq1  GCAGCTAGAGACAAGCGCTCCGGGGTACTGCTTAGTTC---ATATTGTTC  296
      |||||||||| |||| ||||| |||||||| |||||||   |||||||||
seq2  GCAGCTAGAGTCAAGAGCTCCCGGGTACTGGTTAGTTCATAATATTGTTC  254

seq1  CACCTATAGGGTTGCAGTTCCCTTTAGTTCCTTGGGTGCTTTCTCTAGTT  346
      |||| |||||||||||| ||||||||| ||||||||| |||||||||| |
seq2  CACC-ATAGGGTTGCAGATCCCTTTAGATCCTTGGGTACTTTCTCTAGCT  303

seq1  CCTCCATTGGGGGCCCTGTGGTCCATTCAATAGCTAACTGTGAGCATCCA  396
      |||||||||||||||||||| ||||| |||||||| ||||||||||||||
seq2  CCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCA  353

seq1  CTTCTGTGTTTGCTAGGCCCTGGCATAATCTCACAAGAGACAGCTATATC  446
      ||||||||||||||||||||||||||| |||||| |||||||||| ||||
seq2  CTTCTGTGTTTGCTAGGCCCTGGCATAGTCTCACCAGAGACAGCTCTATC  403

seq1  TGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTT  453

seq1  GGAAGCTGATCATGGGATGGATCTCTGGATATGGCAGTC  535
      ||| |||||| |||||||||||| | |||||||||||||
seq2  GGAGGCTGATTATGGGATGGATCCCCGGATATGGCAGTC  492


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