BAC Information

Click to search

BAC

Clone NameB6Ng01-337D04
Chromosome6 (Build37)
Map Location 120,877,894 - 121,007,149
singlet/doubletdoublet
Overlap geneMical3
Upstream geneWnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid
Downstream geneLOC100043793, Minpp1-ps, Pex26, Tuba8, Usp18, Slc6a13, Slc6a12, Iqsec3, LOC100043486, A2m, EG640530, Mug1, Mug4, Mug2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337D04.bB6Ng01-337D04.g
ACCGA121896GA121897
length1,1161,121
definitionB6Ng01-337D04.b B6Ng01-337D04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,006,034 - 121,007,149)(120,877,894 - 120,879,012)
sequence
gaattctttctttttgtctgagaaggccttttttttttttttaaaccagt
attaactcagatgaggtaacttggtggtaaaggctgcaaagcccgatgaa
agaactgattcctgcaacgtgtccctgatctttcctgtggcctaaaagtc
aggcactctggtgctgtgggactggaggccagttacctggtttgtagttt
gtttagatcccacaactcttttatcgctgttgtctctattcagagccatc
actctgtggataccaagcaggcggcgtacaggacatttggttaaactgaa
ttctcaccggtaggcctctctctgggtgcagtgatctgggctgtcttaca
tgttcctggtgtccggtcctcctctactgcttgtccagatgattgtcacc
aaagtgacatcttttttcctgctaacccccagaggtctcaggagctcacg
gggtgagaacaacaatgctggtgtttgcttgacattgactctgaggaggt
gtaactctctcgatggcacactcctgtcacttgcaggatgtcagggtgga
cgctagaatgaggagaggcaggcagagtctgacaggctgcgctttcccct
ctgtcaacccatggtgatgactcctgtcccacaccactggatcctctgcg
ggttctagaggtgtcttttgactcaagacctttgacaataacgcccgatg
acagtagttcctgtatgtgggtcaagtgtcttgtggggcagaatgtgcct
gccttcttttccccaggtgagcagtacttctgagggcgcctgttaaaccg
cacctgaactgggttaggcacactggggtccgctgctctattcccagatc
agttttctagctgtggtccttggtgcaggcgatgatgctgttcgagagct
catgggagagcagtggggaggatggcttgttagggagtagacttgccaca
agctgcccggcggtggtggcgcacacccttttgatccagcacttggggag
gcagaggcagcggatttctgagattgagcccagcttgtgtaacgaaggtg
agttcaggacacgcctgaggcgtaaccagaaaactgtctcggggggaaaa
acagtgaacttgcaca
gaattccaagaaagtgagcagggacagcttctgggttgggctctgagcag
ggccagactggcatgtgactgtgactcagagcctgggggggggcacacag
tacacagcaagtgccattggctcttttctgtcccaccaccatttgatggg
gcaaagacttaggagatagagagctaagttcaagatcagccagctggata
gtagccaggctgggccgacgccaaatcagatccctagagctcttcatgtt
acagggccaagtgacctataaaacatttcctcctggagaggtacagagac
tcaaaggatcatcattagtgaacataagaacaagaagggcctgggtgaag
cctccactgccttggaggcaaaggagttttaaatcatgggctcacaatta
aatatatgatatatataacctatatataatatctatgttatatacatctg
tatatatgtatacaagtacatatatatcatacctgtatatatcctatata
taggatactaaaacacattatataatatatgctaataacaattaaaaata
ataaagagtattttaaaatttatttgcatttatttacgggtgcatgaggg
acagtatgtagaggtcagctttcttcctactgtatgttggaagactgaac
agggttgcttctgcctactaaatctgagccatcttaatggctgcactatt
ggctttcagcttccagaaagaaagacagcaaataaaagggcctgtgtcag
ggtggccctttcctacattgctgaaggcagggtctgaatcaggaatggga
acctcacaggaccctgattcatggttgctgtaggaccgctgtggtcctgg
gaaaagcagccagtctacatctgttttggaagatctctcagactggtgag
tggtgctgggccccttgaatcagcccgataccagactccgaagaatggtg
accttgagcctgggggctgaccagggatgtttgggatatggatggcctga
cttagcctgcttggcgagttagttcatcggacttgagatgacttctatta
tttctttgtccttttggattttggacggaggcatctcagtcatccaagcc
tgaactcacatttggcttacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_121006034_121007149
seq2: B6Ng01-337D04.b_44_1159 (reverse)

seq1  TGTGCAAGTCTTTTTTTTTTCCCCCCCGAGACAGGGTTTCTCTGTATA-G  49
      ||||||||| |   | |||| |||||||||||||   || ||||  || |
seq2  TGTGCAAGT-TCACTGTTTTTCCCCCCGAGACAG---TTTTCTGGTTACG  46

seq1  CC-CAAGC-TGTCCTGGAACTCAC--TCTGTACACCAGGCTGGCCTCAAA  95
      || || || |||||| ||||||||  ||  |||| || ||||| ||||| 
seq2  CCTCAGGCGTGTCCT-GAACTCACCTTCGTTACA-CAAGCTGGGCTCAAT  94

seq1  CTCAGAAATCCGCCTGCCTCTGCCT-CCCAAGTGCTGGGATCAAA--GGT  142
      |||||||||||| |||||||||||| |||||||||| ||||||||  |||
seq2  CTCAGAAATCCG-CTGCCTCTGCCTCCCCAAGTGCT-GGATCAAAAGGGT  142

seq1  GTGCGCCACCACCGCCCGGCAGCTTGT-GCAAGTCTTACT-CCTAACAAG  190
      |||||||||||||||| |||||||||| ||||||| |||| |||||||||
seq2  GTGCGCCACCACCGCCGGGCAGCTTGTGGCAAGTC-TACTCCCTAACAAG  191

seq1  CCATCCTCCCCACTTGCTCTCCCATGAGCTCTCGGACAGCATCATCGCCT  240
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  CCATCCTCCCCAC-TGCTCTCCCATGAGCTCTCGAACAGCATCATCGCCT  240

seq1  GCACCAAGGACCACAGCTAGAAAACTGATCTGGGAATAGAGCAGCGGACC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAAGGACCACAGCTAGAAAACTGATCTGGGAATAGAGCAGCGGACC  290

seq1  CCAGTGTGCCTAACCCAGTTCAGGTGCGGTTTAACAGGCGCCCTCAGAAG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTGCCTAACCCAGTTCAGGTGCGGTTTAACAGGCGCCCTCAGAAG  340

seq1  TACTGCTCACCTGGGGAAAAGAAGGCAGGCACATTCTGCCCCACAAGACA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTCACCTGGGGAAAAGAAGGCAGGCACATTCTGCCCCACAAGACA  390

seq1  CTTGACCCACATACAGGAACTACTGTCATCGGGCGTTATTGTCAAAGGTC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACCCACATACAGGAACTACTGTCATCGGGCGTTATTGTCAAAGGTC  440

seq1  TTGAGTCAAAAGACACCTCTAGAACCCGCAGAGGATCCAGTGGTGTGGGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCAAAAGACACCTCTAGAACCCGCAGAGGATCCAGTGGTGTGGGA  490

seq1  CAGGAGTCATCACCATGGGTTGACAGAGGGGAAAGCGCAGCCTGTCAGAC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTCATCACCATGGGTTGACAGAGGGGAAAGCGCAGCCTGTCAGAC  540

seq1  TCTGCCTGCCTCTCCTCATTCTAGCGTCCACCCTGACATCCTGCAAGTGA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTGCCTCTCCTCATTCTAGCGTCCACCCTGACATCCTGCAAGTGA  590

seq1  CAGGAGTGTGCCATCGAGAGAGTTACACCTCCTCAGAGTCAATGTCAAGC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTGTGCCATCGAGAGAGTTACACCTCCTCAGAGTCAATGTCAAGC  640

seq1  AAACACCAGCATTGTTGTTCTCACCCCGTGAGCTCCTGAGACCTCTGGGG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCAGCATTGTTGTTCTCACCCCGTGAGCTCCTGAGACCTCTGGGG  690

seq1  GTTAGCAGGAAAAAAGATGTCACTTTGGTGACAATCATCTGGACAAGCAG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCAGGAAAAAAGATGTCACTTTGGTGACAATCATCTGGACAAGCAG  740

seq1  TAGAGGAGGACCGGACACCAGGAACATGTAAGACAGCCCAGATCACTGCA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAGGACCGGACACCAGGAACATGTAAGACAGCCCAGATCACTGCA  790

seq1  CCCAGAGAGAGGCCTACCGGTGAGAATTCAGTTTAACCAAATGTCCTGTA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGAGAGGCCTACCGGTGAGAATTCAGTTTAACCAAATGTCCTGTA  840

seq1  CGCCGCCTGCTTGGTATCCACAGAGTGATGGCTCTGAATAGAGACAACAG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGCCTGCTTGGTATCCACAGAGTGATGGCTCTGAATAGAGACAACAG  890

seq1  CGATAAAAGAGTTGTGGGATCTAAACAAACTACAAACCAGGTAACTGGCC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAAAAGAGTTGTGGGATCTAAACAAACTACAAACCAGGTAACTGGCC  940

seq1  TCCAGTCCCACAGCACCAGAGTGCCTGACTTTTAGGCCACAGGAAAGATC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCCCACAGCACCAGAGTGCCTGACTTTTAGGCCACAGGAAAGATC  990

seq1  AGGGACACGTTGCAGGAATCAGTTCTTTCATCGGGCTTTGCAGCCTTTAC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACACGTTGCAGGAATCAGTTCTTTCATCGGGCTTTGCAGCCTTTAC  1040

seq1  CACCAAGTTACCTCATCTGAGTTAATACTGGTTTAAAAAAAAAAAAAAGG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGTTACCTCATCTGAGTTAATACTGGTTTAAAAAAAAAAAAAAGG  1090

seq1  CCTTCTCAGACAAAAAGAAAGAATTC  1116
      ||||||||||||||||||||||||||
seq2  CCTTCTCAGACAAAAAGAAAGAATTC  1116

seq1: chr6_120877894_120879012
seq2: B6Ng01-337D04.g_64_1184

seq1  GAATTCCAAGAAAGTGAGCAGGGACAGCTTCTGGGTTGGGCTCTGAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGAAAGTGAGCAGGGACAGCTTCTGGGTTGGGCTCTGAGCAG  50

seq1  GGCCAGACTGGCATGTGACTGTGACTCAGAGCCTGGGGGGGGGCACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGACTGGCATGTGACTGTGACTCAGAGCCTGGGGGGGGGCACACAG  100

seq1  TACACAGCAAGTGCCATTGGCTCTTTTCTGTCCCACCACCATTTGATGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGCAAGTGCCATTGGCTCTTTTCTGTCCCACCACCATTTGATGGG  150

seq1  GCAAAGACTTAGGAGATAGAGAGCTAAGTTCAAGATCAGCCAGCTGGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGACTTAGGAGATAGAGAGCTAAGTTCAAGATCAGCCAGCTGGATA  200

seq1  GTAGCCAGGCTGGGCCGACGCCAAATCAGATCCCTAGAGCTCTTCATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCAGGCTGGGCCGACGCCAAATCAGATCCCTAGAGCTCTTCATGTT  250

seq1  ACAGGGCCAAGTGACCTATAAAACATTTCCTCCTGGAGAGGTACAGAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCCAAGTGACCTATAAAACATTTCCTCCTGGAGAGGTACAGAGAC  300

seq1  TCAAAGGATCATCATTAGTGAACATAAGAACAAGAAGGGCCTGGGTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGATCATCATTAGTGAACATAAGAACAAGAAGGGCCTGGGTGAAG  350

seq1  CCTCCACTGCCTTGGAGGCAAAGGAGTTTTAAATCATGGGCTCACAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACTGCCTTGGAGGCAAAGGAGTTTTAAATCATGGGCTCACAATTA  400

seq1  AATATATGATATATATAACCTATATATAATATCTATGTTATATACATCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGATATATATAACCTATATATAATATCTATGTTATATACATCTG  450

seq1  TATATATGTATACAAGTACATATATATCATACCTGTATATATCCTATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGTATACAAGTACATATATATCATACCTGTATATATCCTATATA  500

seq1  TAGGATACTAAAACACATTATATAATATATGCTAATAACAATTAAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATACTAAAACACATTATATAATATATGCTAATAACAATTAAAAATA  550

seq1  ATAAAGAGTATTTTAAAATTTATTTGCATTTATTTACGGGTGCATGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAGTATTTTAAAATTTATTTGCATTTATTTACGGGTGCATGAGGG  600

seq1  ACAGTATGTAGAGGTCAGCTTTCTTCCTACTGTATGTTGGAAGACTGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATGTAGAGGTCAGCTTTCTTCCTACTGTATGTTGGAAGACTGAAC  650

seq1  AGGGTTGCTTCTGCCTACTAAATCTGAGCCATCTTAATGGCTGCACTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGCTTCTGCCTACTAAATCTGAGCCATCTTAATGGCTGCACTATT  700

seq1  GGCTTTCAGCTTCCAGAAAGAAAGACAGCAAATAAAAGGGCCTGTGTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCAGCTTCCAGAAAGAAAGACAGCAAATAAAAGGGCCTGTGTCAG  750

seq1  GGTGGCCCTTTCCTACATTGCTGAAGGCAGGGTCTGAATCAGGAATGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCCTTTCCTACATTGCTGAAGGCAGGGTCTGAATCAGGAATGGGA  800

seq1  ACCTCACAGGACCCTGATTCATGGTTGCTGTAGGACCGCTGTGGTCCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACAGGACCCTGATTCATGGTTGCTGTAGGACCGCTGTGGTCCTGG  850

seq1  GAAAAGCAGCCAGTCTACATCTG-TTTGGAAGATCCCTCAGACTGGTGAG  899
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  GAAAAGCAGCCAGTCTACATCTGTTTTGGAAGATCTCTCAGACTGGTGAG  900

seq1  TGGTGCT-GGCCCCTTGAATCAGCCCGATACCAGACTCCGAAGGAAATGG  948
      ||||||| |||||||||||||||||||||||||||||||||||  |||||
seq2  TGGTGCTGGGCCCCTTGAATCAGCCCGATACCAGACTCCGAAG--AATGG  948

seq1  TGACCTTGAAGCCTGGGGGCTGACCAGGGATGTTT-GGATATGGATGGCC  997
      |||||||| |||||||||||||||||||||||||| ||||||||||||||
seq2  TGACCTTG-AGCCTGGGGGCTGACCAGGGATGTTTGGGATATGGATGGCC  997

seq1  TGACTTAG-CTGC-TGGCGAGGTAAGGTCCATCGGACTTGAGATGACTTC  1045
      |||||||| |||| ||||||| ||  || |||||||||||||||||||||
seq2  TGACTTAGCCTGCTTGGCGAGTTA--GTTCATCGGACTTGAGATGACTTC  1045

seq1  TATTTATTTCTTTGTCCTTTTTGATTTT-GACGGAGG-TTCTCAAGTCAT  1093
      || |||||||||||||||||| |||||| ||||||||  |||| ||||||
seq2  TA-TTATTTCTTTGTCCTTTTGGATTTTGGACGGAGGCATCTC-AGTCAT  1093

seq1  CCAAG-CTGACCTCACATTT-GCTTACG  1119
      ||||| |||| ||||||||| |||||||
seq2  CCAAGCCTGAACTCACATTTGGCTTACG  1121