BAC Information

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BAC

Clone NameB6Ng01-337G16
Chromosome6 (Build37)6 (Build37)
Map Location 121,624,631 - 121,625,033106,150,071 - 106,151,111
singlet/doubletsingletsinglet
Overlap geneA2m
Upstream geneCecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps, Pex26, Tuba8, Usp18, Slc6a13, Slc6a12, Iqsec3, LOC100043486
Downstream geneEG640530, Mug1, Mug4, Mug2, Mug-ps1, Klrg1, LOC625931, M6pr, Phc1, 1700063H04Rik, LOC677375, 4933426K21Rik, EG667035, Mfap5, Aicda, LOC667105, Apobec1, Gdf3, Dppa3, EG667107
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337G16.bB6Ng01-337G16.g
ACCGA122054GA122055
length8991,051
definitionB6Ng01-337G16.b B6Ng01-337G16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(121,624,631 - 121,625,033)(106,150,071 - 106,151,111)
sequence
gaattcccccacctagggatccatccaatatacaggtgttaaacccagga
cgctattgcaaatgccgggaagagactgtaaggagcctgatatgactcct
caatacagatgagaatccttgcagccaaccactggactgagcacagggac
cccaatggaggaattagggaaaggactaaagaagctaaaggagtttgcaa
cgccgtaggaataacaacaatatcaaccaaccagacaccccccagagctc
ccaagggctaaaacaccaaccatactgaacacatggagtgatccatgtat
ctagttggatatgcagcagaggatggccttatcttggtcctctgaaggct
cgatgccccagtataggggaatgccaaggcagagaagtgggagtggttgg
tcagtgggggaacaccctcataaaagcaggggaagggaggatggaatagg
ggatttgcagatggggaaatagggaaaggggatactaatttctgactttt
tatagggaggatgatccctgccctcccaccaccacctactctgcccgagt
cttacctggaggtagacacacccttctccagctacctttgcggtgtaatc
cccaggcacagttggcaatgtgactctctgtaataataactggttgtcgt
tgttcacttggaaattttgaataaaatgcgccagaagactgggatggtca
catgtgcagcttcttcgctcttgtgaaagtagctgctttcgtatttggac
aaaagcatggagagtcactaccctgtcctgaaagaggaatggggtaactc
acctcagggatcacaacttgatcagttgcccagaacgtctggagcttaag
ccctaatggaggtgctttttgggtggagaatcaaagctagtatgagcca
gaattccaacttcaagctttacatccagccttttgatgttactcatatga
tattctgggtgagggtagaacaaatataagataggccacagctcagaaag
ctttcccatatcatgatatgtaatcatgaatgcaatagtcttgttacatt
tcttggactcaaattaaactatactatgtaacttgttaacttttatatgc
taacttaaaaatataaaaataatactaagagataaaatctgttgctatag
tcatagaaaattctttggtcacattagacgtaaatgacacctgaatgtgg
tttcctaaaagaattttacataacacttggagataaaacaaacaactgtc
atttacatagataaaaagacaacaacatatgttcaatgcagtcagtgtac
atatgggatctttcaggttgggtcattccaatatctaaagcttagataag
gcctactccagcataagtttttcaaaaaaaactttcaaaaataaaaataa
aagaaatacaacacttgtgtgtgagctaaatttttgataatatggatgtg
aggaattgaaccatattgactcacttaggaatcagtcagtgactccttag
tcatttctcttttgggttcttctgattcagctaataaaatgagctgcaga
tggcatcacagtatcttccaaagctttgtcctatatcactgtcttatttt
catagaccaatgtattgtctgatgacaattcaggctataataaatgcttt
atatacttagttatatatatggatttatatatatatatccctaaactaag
tatataatgatatataattgaatatattatgtatacctaattatatatgt
gcgtgtgtttctttgtgtgtgtatatttgtgtatatacacacacacacag
acaaattgaaatggtgggtacttctatataaccaggagttaattgtaggg
agaggagtagatgatttggggagggcagaatttgaaccctctagaggagg
aaatttatagttttctattaagaaaggaaggaaaataagttggggaatgg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_121624631_121625033
seq2: B6Ng01-337G16.b_534_943 (reverse)

seq1  TGGCTCCTACTAGCTTTGATTCTCCACCC-AAAAGCACCTCCA-TAGGGC  48
      |||||| |||||||||||||||||||||| ||||||||||||| ||||||
seq2  TGGCTCATACTAGCTTTGATTCTCCACCCAAAAAGCACCTCCATTAGGGC  50

seq1  CTAAGCTCCAGAC-TTCTGGGCAACTGATCACGTTGTGATCCCTG-GGTG  96
       |||||||||||| ||||||||||||||||| ||||||||||||| ||||
seq2  TTAAGCTCCAGACGTTCTGGGCAACTGATCAAGTTGTGATCCCTGAGGTG  100

seq1  AGTTACCCCATTCCTCTTTCAGGACACGGTAGTGGCTCTCCATGC-TTTG  145
      |||||||||||||||||||||||||| ||||||| |||||||||| ||||
seq2  AGTTACCCCATTCCTCTTTCAGGACAGGGTAGTGACTCTCCATGCTTTTG  150

seq1  TCCAAATACG-GAGCAGCTACTTTCACAAGAGCGAAGAAAGCTGCACATG  194
      ||||||||||  ||||||||||||||||||||||||| ||||||||||||
seq2  TCCAAATACGAAAGCAGCTACTTTCACAAGAGCGAAG-AAGCTGCACATG  199

seq1  TGACCAT-CCAGTCTTCTGGCGCATTTTATACAAAA-TTCCAAGTGAACA  242
      ||||||| |||||||||||||||||||||| ||||| |||||||||||||
seq2  TGACCATCCCAGTCTTCTGGCGCATTTTATTCAAAATTTCCAAGTGAACA  249

seq1  ACGACAACCAGTTATTATTACAGAGAGTCACATTGCCAACTGTGCCTGGG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACAACCAGTTATTATTACAGAGAGTCACATTGCCAACTGTGCCTGGG  299

seq1  GATTACACCGCAAAGGTAGCTGGAGAAGGGTGTGTCTACCTCCAGGTAAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACACCGCAAAGGTAGCTGGAGAAGGGTGTGTCTACCTCCAGGTAAG  349

seq1  ACTTGGGCAGAGGAGGTGGTGGTGGGAGGGCAGGGATCATCCTCCCTATA  392
      ||| |||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACTCGGGCAGAGTAGGTGGTGGTGGGAGGGCAGGGATCATCCTCCCTATA  399

seq1  AAAAGTCAGAA  403
      |||||||||||
seq2  AAAAGTCAGAA  410

seq1: chr6_106150071_106151111
seq2: B6Ng01-337G16.g_63_1113 (reverse)

seq1  TCCAT--CCCCACTTATTTT-CTTTCTTTCTTTATAG-AAACTAT-AATT  45
      |||||  ||| ||||||||| ||| ||||||| |||| ||||||| ||||
seq2  TCCATTCCCCAACTTATTTTCCTTCCTTTCTTAATAGAAAACTATAAATT  50

seq1  TCCT-CTCTAGA-GGTTCAAATTCTGCCCTCCCCAAATCATCTTACTCCT  93
      |||| ||||||| ||||||||||||||||||||||||||||| |||||||
seq2  TCCTCCTCTAGAGGGTTCAAATTCTGCCCTCCCCAAATCATC-TACTCCT  99

seq1  CT-CCTACAATT-ACTCCTGGTTATATAGAAGTA-CCACCATTTCAA-TT  139
      || ||||||||| ||||||||||||||||||||| |||||||||||| ||
seq2  CTCCCTACAATTAACTCCTGGTTATATAGAAGTACCCACCATTTCAATTT  149

seq1  GTCTGTGTGTGTGTGTATATACACAAATATACACACACAAAGAAACACAC  189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGTGTGTGTGTATATACACAAATATACACACACAAAGAAACACAC  199

seq1  GCACATATATAATTAGGTATACATAATATATTCAATTATATATCATTATA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATATATAATTAGGTATACATAATATATTCAATTATATATCATTATA  249

seq1  TACTTAGTTTAGGGATATATATATATAAATCCATATATATAACTAAGTAT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGTTTAGGGATATATATATATAAATCCATATATATAACTAAGTAT  299

seq1  ATAAAGCATTTATTATAGCCTGAATTGTCATCAGACAATACATTGGTCTA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCATTTATTATAGCCTGAATTGTCATCAGACAATACATTGGTCTA  349

seq1  TGAAAATAAGACAGTGATATAGGACAAAGCTTTGGAAGATACTGTGATGC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATAAGACAGTGATATAGGACAAAGCTTTGGAAGATACTGTGATGC  399

seq1  CATCTGCAGCTCATTTTATTAGCTGAATCAGAAGAACCCAAAAGAGAAAT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCAGCTCATTTTATTAGCTGAATCAGAAGAACCCAAAAGAGAAAT  449

seq1  GACTAAGGAGTCACTGACTGATTCCTAAGTGAGTCAATATGGTTCAATTC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGGAGTCACTGACTGATTCCTAAGTGAGTCAATATGGTTCAATTC  499

seq1  CTCACATCCATATTATCAAAAATTTAGCTCACACACAAGTGTTGTATTTC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATCCATATTATCAAAAATTTAGCTCACACACAAGTGTTGTATTTC  549

seq1  TTTTATTTTTATTTTTGAAAGTTTTTTTTGAAAAACTTATGCTGGAGTAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTATTTTTGAAAGTTTTTTTTGAAAAACTTATGCTGGAGTAG  599

seq1  GCCTTATCTAAGCTTTAGATATTGGAATGACCCAACCTGAAAGATCCCAT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATCTAAGCTTTAGATATTGGAATGACCCAACCTGAAAGATCCCAT  649

seq1  ATGTACACTGACTGCATTGAACATATGTTGTTGTCTTTTTATCTATGTAA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACACTGACTGCATTGAACATATGTTGTTGTCTTTTTATCTATGTAA  699

seq1  ATGACAGTTGTTTGTTTTATCTCCAAGTGTTATGTAAAATTCTTTTAGGA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGTTGTTTGTTTTATCTCCAAGTGTTATGTAAAATTCTTTTAGGA  749

seq1  AACCACATTCAGGTGTCATTTACGTCTAATGTGACCAAAGAATTTTCTAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACATTCAGGTGTCATTTACGTCTAATGTGACCAAAGAATTTTCTAT  799

seq1  GACTATAGCAACAGATTTTATCTCTTAGTATTATTTTTATATTTTTAAGT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATAGCAACAGATTTTATCTCTTAGTATTATTTTTATATTTTTAAGT  849

seq1  TAGCATATAAAAGTTAACAAGTTACATAGTATAGTTTAATTTGAGTCCAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATATAAAAGTTAACAAGTTACATAGTATAGTTTAATTTGAGTCCAA  899

seq1  GAAATGTAACAAGACTATTGCATTCATGATTACATATCATGATATGGGAA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTAACAAGACTATTGCATTCATGATTACATATCATGATATGGGAA  949

seq1  AGCTTTCTGAGCTGTGGCCTATCTTATATTTGTTCTACCCTCACCCAGAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTGAGCTGTGGCCTATCTTATATTTGTTCTACCCTCACCCAGAA  999

seq1  TATCATATGAGTAACATCAAAAGGCTGGATGTAAAGCTTGAAGTTGGAAT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATATGAGTAACATCAAAAGGCTGGATGTAAAGCTTGAAGTTGGAAT  1049

seq1  TC  1041
      ||
seq2  TC  1051