BAC Information

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BAC

Clone NameB6Ng01-338D15
Chromosome6 (Build37)
Map Location 26,344,808 - 26,506,984
singlet/doubletdoublet
Overlap genenone
Upstream geneGpr37, Pot1a, EG626912, LOC100041210
Downstream geneLOC100041247, Grm8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338D15.bB6Ng01-338D15.g
ACCGA122598GA122599
length1,2161,075
definitionB6Ng01-338D15.b B6Ng01-338D15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,344,808 - 26,346,014)(26,505,903 - 26,506,984)
sequence
gaattcatgtatttcaactgtaagtatagcagtagtaaccatgaatttat
aggcattcctgtgctgcagtgtagtctttcaggtatagaattacataaac
tgtatacctttgtttgtaaatatgttcagatcctatcacgttctgtgaag
aatagctgtagctaagaagacaaacgacagcaaatgctgttgatgggata
atggataaaaccgtattagccgctggtatcagagtaaactggagtcacca
ttaggtacatcagcatctacaggcaaaaacactatcacctgatccaggta
catcatttgcttcttgtttgtcaacttccaccatatttcttcctctcacc
tttacaactctagttattttgattttattaaatagcattttttctttata
tcctaaagacctgttacctatgtataagattttgccatattaccttggag
tctactagctgttttcaaccattcattcctttttgtggtgtagttatgtt
tttctttacatcttctgcagaagattgctgaagaatgtatcatcccactg
gccttggtcagataacattctttttgcttgggaatgttgattttattatg
ccactgcagaaccatggtaatttttcctaattgattttttctataaaata
ctttagaacaacaatgacctacattcattgttgtcaataaaagttctgga
ttactttaattgcagtttaattgtgatgttttaattatggttaagtattt
taattgtttcatttatttttatatccaaattaagtatttcttttcaattg
tctaacaatgacttcttagcttaaaattaaaataaaaaccataggtgttt
ctcttcatttgtatatcatactgttaaaatttctcattttacatctgaca
gataaaattctatttttctgtaattttgcatatccaattttgacatattg
aacactaataatttatgtattttgctgtatcttttctataatatccattt
atctcttatgctcattataatatttacacttttgatatttattgtagaaa
ttatagaaagtacaatattcttaatatcttaatataatgatgattttggt
tcaccattaccagtagtttataccatttgtagtttcttcttttccatttc
attttttggatgccgtttatataaaaggaacttaatatttatgcaacctt
agtacaaatgggaaaa

gaattcaatacacttcacaaggtcacatttataataaactcatactgcac
atgaaagatggcaaaaatgaggtccctcttctgccgtacaacaaaatata
tcacaaccgtattctgagctaagttctcaaagttgaaagatgctgtttca
gttgcagtaactgactttgtagcttttgcttaatattttccaaatcttaa
atgttatgttctaaatcaaatgaaataaaaaaggaataccttaatcctgc
agtgctatagtcaggtcaaactgaaaaccaaatcccataaattagggacg
acttttctctaattattttgggagttatgtcaccatgctaaaagccaatc
actagacataattcaaggataaatacatgtctggggattcagataagaaa
gaagaaacattctagaattataactatgttcggtgaaaacaggtgaatag
aagaaagttcaattaaatattaagttccatgagaatgactctccttttaa
aaaaaatcactcatatttaacatcctaagatgttaaattctttctaagaa
gccaagatttacaaaccagccttaccaccccagttttacaactttacaaa
actatgtaagatatctaattcataaaatgtttgtcactgaattaggaaca
caacctaccaaaaaaaaaaaaaaaagagccatttttaggatgaaatgcaa
taatgcacgttgcagttttacagattgacacttaatgaagacttgtaatc
tttcttctacactttgggattaattattactggttaacttttgatatttc
ttcttcctatataccttaaaatgtaaatgaaataggatttttatgcctca
tttatctttttctgtaactgtgtgattcaacttcatgccaaaggcacttt
ctttgtgacaatctcaattactgaccacacagaaaaaagacttcaacagg
actaggggttcaaaaatctgccatctgatatgcattgaagcttagctctg
tgagcaaatacgttaaatttctacagaactgacagcaggtttgtatatga
tatatgactgcataccgcatcagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_26344808_26346014
seq2: B6Ng01-338D15.b_45_1260

seq1  GAATTCATGTATTTCAACTGTAAGTATAGCAGTAGTAACCATGAATTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTATTTCAACTGTAAGTATAGCAGTAGTAACCATGAATTTAT  50

seq1  AGGCATTCCTGTGCTGCAGTGTAGTCTTTCAGGTATAGAATTACATAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTCCTGTGCTGCAGTGTAGTCTTTCAGGTATAGAATTACATAAAC  100

seq1  TGTATACCTTTGTTTGTAAATATGTTCAGATCCTATCACGTTCTGTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACCTTTGTTTGTAAATATGTTCAGATCCTATCACGTTCTGTGAAG  150

seq1  AATAGCTGTAGCTAAGAAGACAAACGACAGCAAATGCTGTTGATGGGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTGTAGCTAAGAAGACAAACGACAGCAAATGCTGTTGATGGGATA  200

seq1  ATGGATAAAACCGTATTAGCCGCTGGTATCAGAGTAAACTGGAGTCACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATAAAACCGTATTAGCCGCTGGTATCAGAGTAAACTGGAGTCACCA  250

seq1  TTAGGTACATCAGCATCTACAGGCAAAAACACTATCACCTGATCCAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTACATCAGCATCTACAGGCAAAAACACTATCACCTGATCCAGGTA  300

seq1  CATCATTTGCTTCTTGTTTGTCAACTTCCACCATATTTCTTCCTCTCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTGCTTCTTGTTTGTCAACTTCCACCATATTTCTTCCTCTCACC  350

seq1  TTTACAACTCTAGTTATTTTGATTTTATTAAATAGCATTTTTTCTTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAACTCTAGTTATTTTGATTTTATTAAATAGCATTTTTTCTTTATA  400

seq1  TCCTAAAGACCTGTTACCTATGTATAAGATTTTGCCATATTACCTTGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAGACCTGTTACCTATGTATAAGATTTTGCCATATTACCTTGGAG  450

seq1  TCTACTAGCTGTTTTCAACCATTCATTCCTTTTTGTGGTGTAGTTATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTAGCTGTTTTCAACCATTCATTCCTTTTTGTGGTGTAGTTATGTT  500

seq1  TTTCTTTACATCTTCTGCAGAAGATTGCTGAAGAATGTATCATCCCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTACATCTTCTGCAGAAGATTGCTGAAGAATGTATCATCCCACTG  550

seq1  GCCTTGGTCAGATAACATTCTTTTTGCTTGGGAATGTTGATTTTATTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGTCAGATAACATTCTTTTTGCTTGGGAATGTTGATTTTATTATG  600

seq1  CCACTGCAGAACCATGGTAATTTTTCCTAATTGATTTTTTCTATAAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCAGAACCATGGTAATTTTTCCTAATTGATTTTTTCTATAAAATA  650

seq1  CTTTAGAACAACAATGACCTACATTCATTGTTGTCAATAAAAGTTCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAACAACAATGACCTACATTCATTGTTGTCAATAAAAGTTCTGGA  700

seq1  TTACTTTAATTGCAGTTTAATTGTGATGTTTTAATTATGGTTAAGTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTAATTGCAGTTTAATTGTGATGTTTTAATTATGGTTAAGTATTT  750

seq1  TAATTGTTTCATTTATTTTTATATCCAAATTAAGTATTTCTTTTCAATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTTTCATTTATTTTTATATCCAAATTAAGTATTTCTTTTCAATTG  800

seq1  TCTAACAATGACTTCTTAGCTTAAAATTAAAATAAAAACCATAGGTGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACAATGACTTCTTAGCTTAAAATTAAAATAAAAACCATAGGTGTTT  850

seq1  CTCTTCATTTGTATATCATACTGTTAAAATTTCTCATTTTACATCTGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCATTTGTATATCATACTGTTAAAATTTCTCATTTTACATCTGACA  900

seq1  GATAAAATTCTATTTTTCTGTAATTTTGCATATCCAATTTTGACATATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAATTCTATTTTTCTGTAATTTTGCATATCCAATTTTGACATATTG  950

seq1  AACACTAATAATTTATGTATTTTGCTGTATCTTTTCTATAATATCCATTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTAATAATTTATGTATTTTGCTGTATCTTTTCTATAATATCCATTT  1000

seq1  ATCTCTTATGCTCATTAT-ATATTTACACTTTTGATATTTTAATTGTTAG  1049
      |||||||||||||||||| |||||||||||||||||||||  |||| |||
seq2  ATCTCTTATGCTCATTATAATATTTACACTTTTGATATTT--ATTG-TAG  1047

seq1  AA--TATAGAAAGTACAATA-TCTT-ATATCTT-ATATAATGATGATTTG  1094
      ||  |||||||||||||||| |||| ||||||| ||||||||||||||| 
seq2  AAATTATAGAAAGTACAATATTCTTAATATCTTAATATAATGATGATTTT  1097

seq1  GGTTCA-CATTACAAGTAGTTTATTACCATTTGTAGTTTCT--CTTTCCA  1141
      |||||| |||||| ||||||||| |||||||||||||||||   ||||||
seq2  GGTTCACCATTACCAGTAGTTTA-TACCATTTGTAGTTTCTTCTTTTCCA  1146

seq1  TTCTATTTTT--GATGCCTTTTAATATAAGA-GAATTTTATATTTATGGA  1188
      ||  ||||||  |||||| ||| |||||| | ||| || ||||||||| |
seq2  TTTCATTTTTTGGATGCCGTTT-ATATAAAAGGAACTTAATATTTATGCA  1195

seq1  TACTTAGTA-AAATGGAAAA-  1207
        ||||||| |||||| ||| 
seq2  ACCTTAGTACAAATGGGAAAA  1216


seq1: chr6_26505903_26506984
seq2: B6Ng01-338D15.g_65_1139 (reverse)

seq1  GTCTGATGCGGTATTGGCAGGTCATATATCATATACAAACCCTGCTGTCA  50
      ||||||||||||||  ||| ||||||||||||||||||| ||||||||||
seq2  GTCTGATGCGGTAT--GCA-GTCATATATCATATACAAA-CCTGCTGTCA  46

seq1  G-TCTGTAGAAAATTTAACGTATTTTGCTTCACAGAGCTAAGCTTCAATG  99
      | ||||||| |||||||||||| ||||| |||||||||||||||||||||
seq2  GTTCTGTAG-AAATTTAACGTA-TTTGC-TCACAGAGCTAAGCTTCAATG  93

seq1  CATATCAGATGGCAGATTTTTGAACCCCTAGTCCTGTTTGAAGTCTTTTT  149
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CATATCAGATGGCAGATTTTTGAACCCCTAGTCCTG-TTGAAGTCTTTTT  142

seq1  TCTGTGTGGTCAGTAATTGAGATTGTCACAAAGAAAGTGCCTTTGGCATG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGGTCAGTAATTGAGATTGTCACAAAGAAAGTGCCTTTGGCATG  192

seq1  AAGTTGAATCACACAGTTACAGAAAAAGATAAATGAGGCATAAAAATCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAATCACACAGTTACAGAAAAAGATAAATGAGGCATAAAAATCCT  242

seq1  ATTTCATTTACATTTTAAGGTATATAGGAAGAAGAAATATCAAAAGTTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTTACATTTTAAGGTATATAGGAAGAAGAAATATCAAAAGTTAA  292

seq1  CCAGTAATAATTAATCCCAAAGTGTAGAAGAAAGATTACAAGTCTTCATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAATAATTAATCCCAAAGTGTAGAAGAAAGATTACAAGTCTTCATT  342

seq1  AAGTGTCAATCTGTAAAACTGCAACGTGCATTATTGCATTTCATCCTAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCAATCTGTAAAACTGCAACGTGCATTATTGCATTTCATCCTAAA  392

seq1  AATGGCTCTTTTTTTTTTTTTTTTGGTAGGTTGTGTTCCTAATTCAGTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTCTTTTTTTTTTTTTTTTGGTAGGTTGTGTTCCTAATTCAGTGA  442

seq1  CAAACATTTTATGAATTAGATATCTTACATAGTTTTGTAAAGTTGTAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATTTTATGAATTAGATATCTTACATAGTTTTGTAAAGTTGTAAAA  492

seq1  CTGGGGTGGTAAGGCTGGTTTGTAAATCTTGGCTTCTTAGAAAGAATTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTGGTAAGGCTGGTTTGTAAATCTTGGCTTCTTAGAAAGAATTTA  542

seq1  ACATCTTAGGATGTTAAATATGAGTGATTTTTTTTAAAAGGAGAGTCATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTAGGATGTTAAATATGAGTGATTTTTTTTAAAAGGAGAGTCATT  592

seq1  CTCATGGAACTTAATATTTAATTGAACTTTCTTCTATTCACCTGTTTTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGAACTTAATATTTAATTGAACTTTCTTCTATTCACCTGTTTTCA  642

seq1  CCGAACATAGTTATAATTCTAGAATGTTTCTTCTTTCTTATCTGAATCCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAACATAGTTATAATTCTAGAATGTTTCTTCTTTCTTATCTGAATCCC  692

seq1  CAGACATGTATTTATCCTTGAATTATGTCTAGTGATTGGCTTTTAGCATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATGTATTTATCCTTGAATTATGTCTAGTGATTGGCTTTTAGCATG  742

seq1  GTGACATAACTCCCAAAATAATTAGAGAAAAGTCGTCCCTAATTTATGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATAACTCCCAAAATAATTAGAGAAAAGTCGTCCCTAATTTATGGG  792

seq1  ATTTGGTTTTCAGTTTGACCTGACTATAGCACTGCAGGATTAAGGTATTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTTTTCAGTTTGACCTGACTATAGCACTGCAGGATTAAGGTATTC  842

seq1  CTTTTTTATTTCATTTGATTTAGAACATAACATTTAAGATTTGGAAAATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTATTTCATTTGATTTAGAACATAACATTTAAGATTTGGAAAATA  892

seq1  TTAAGCAAAAGCTACAAAGTCAGTTACTGCAACTGAAACAGCATCTTTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAAAAGCTACAAAGTCAGTTACTGCAACTGAAACAGCATCTTTCA  942

seq1  ACTTTGAGAACTTAGCTCAGAATACGGTTGTGATATATTTTGTTGTACGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAGAACTTAGCTCAGAATACGGTTGTGATATATTTTGTTGTACGG  992

seq1  CAGAAGAGGGACCTCATTTTTGCCATCTTTCATGTGCAGTATGAGTTTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGGGACCTCATTTTTGCCATCTTTCATGTGCAGTATGAGTTTAT  1042

seq1  TATAAATGTGACCTTGTGAAGTGTATTGAATTC  1082
      |||||||||||||||||||||||||||||||||
seq2  TATAAATGTGACCTTGTGAAGTGTATTGAATTC  1075


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