BAC Information

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BAC

Clone NameB6Ng01-338E08
Chromosome6 (Build37)
Map Location 77,624,896 - 77,696,667
singlet/doubletdoublet
Overlap geneCtnna2
Upstream geneLOC100042956, Lrrtm1
Downstream geneLOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338E08.bB6Ng01-338E08.g
ACCGA122630GA122631
length1,134774
definitionB6Ng01-338E08.b B6Ng01-338E08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,695,548 - 77,696,667)(77,624,896 - 77,625,669)
sequence
gaattccatacatgaatataatgtgttttgttcacctttaattaatgtag
atctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcatgtgtaaaattgc
acatgagtttgcagacacacatgcatgtatatggtgtatatgtataggta
tgtgtgtatagaggccagaaggcaaccttgcttgttgtgttttagggact
ctccaccattttaggcaagatttcttatttgtgtatcctgggtaggcagg
aagccatcagctggccttggcctctccacccctggggttatatgtttgta
cctccagtcccagctcttggtttttcagcagggataatggaaatcaagct
cagttccttgacttgtttgcatggcaaacacttttctagccctgggtaga
tcttatttccttttaaagtgatgcaatcaggctggtggtacaatggtagg
ttagtggtctagtgaatgcttctcatacataagactctgggctttattct
gcagaaccataaacaacaacaaaaataaataagtcaaagtcacaaaaaca
aaacaaatttccacattccaagctgctgccaaagatggaaatcagtttcc
agaagtatttgcctcagaagttttcaaagaaacccaaatgtgcatgcaac
actggacagatgaaaggaagacaggagggaaagtagcatagagatacatt
tctgtggaaatgccacacgcctgccaattcaccttaatgtaacatttgct
aggggtttttacagatgcatattttatcaataaaacacatttttatttca
gctttgattcagttcagggcccagatgtgttccagttctccaaagtgacc
ttgtttctaaaagaactgggaagaagccttttacctcttctctttttgga
gcccttggcttttgggaatgctgtaatgttgcagaaaaaaaaaaatgaca
cagtttactgctggagaatggcttgctcgtccactgtcagacctctgcat
attgttttcttcggagttattgtgcttaccatcaggaggcatactgtcat
tattctttagtccatgaccacttattctaatagatcacccgtgacataaa
tacaaaagagcgtggcttaagtgtttgcttcaca

gaattcttccttaacacttcccagcttcaggtgatctgcttccaatggtg
ttactggacttttaccccaaatacttcatgctctgcttcattttcaccta
atagtttcctacttctgtatctgggagtgtttttttttttctcttgtgag
atcagtcacattgaatatatatttgcatatatcaaattttcatatatatg
aaatgtatttatatatatatgaaaatttaattaaaggtatggctgcctaa
taacaggggttaagaaaaagaaacaaaaattctagcagaatatctttttg
agttttgtttttgctttctgtctggcaataaaaagataatttgtggtgtt
ccagtataagaatattggcttttttttggatggcaatcaatgaagagcag
aaaaccaaacctcaataactggagtgatcacctatcccccccccctccca
tcccaggaggttcaccttcctttccttgttggctgccatctcacttctca
aacctcactcttaaaatgtttgaagaatgtgttgtctggaaaaaataata
atttctgaaataagattctaatgtaaaatgttcactaagatctgcagtag
acagcagcagtgtgcttgatcactcaagggttctcacaaacatggtgatt
cctatgctgtgaaaggcaagtgttgggatagagagagctggatttgcaca
tgctcagctgcagatgagagtggtgaaagagaaacggagagaggaagagg
gaaaggaggggagaggaggggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_77695548_77696667
seq2: B6Ng01-338E08.b_39_1172 (reverse)

seq1  TGTGAAGCCAACACTT-AGACACGCTC-TTTGTAATTATG-CACGGGTGA  47
      |||||||| ||||||| || ||||||| |||||| ||||| |||||||||
seq2  TGTGAAGCAAACACTTAAGCCACGCTCTTTTGTATTTATGTCACGGGTGA  50

seq1  TCTATTAGAAT-AGT-GTCATTGACTAAAGAAT-ATGACAGTAATGCCT-  93
      ||||||||||| ||| ||||| ||||||||||| |||||||| |||||| 
seq2  TCTATTAGAATAAGTGGTCATGGACTAAAGAATAATGACAGT-ATGCCTC  99

seq1  CTGATGGTTAGCACAATAACTCCG-AGAAAAC-ATATGCAGA-GTCTGAC  140
      |||||||| ||||||||||||||| ||||||| ||||||||| |||||||
seq2  CTGATGGTAAGCACAATAACTCCGAAGAAAACAATATGCAGAGGTCTGAC  149

seq1  AGTGGACGAGCAGCCAATTCT-CAGCAGT-AACTGTTGTCA-TTTTTTTT  187
      ||||||||||||  | ||||| ||||||| ||||| ||||| ||||||||
seq2  AGTGGACGAGCAAGCCATTCTCCAGCAGTAAACTG-TGTCATTTTTTTTT  198

seq1  TTCTGCAACATTACAGCATTCCCAAAAGCCAAGGGCTCCAAAAAGAGAAG  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAACATTACAGCATTCCCAAAAGCCAAGGGCTCCAAAAAGAGAAG  248

seq1  AGGTAAAAGGCTTCTTTCCAGTTCTTTTAG-AACAAGGTCACTTTGGAGA  286
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  AGGTAAAAGGCTTCTTCCCAGTTCTTTTAGAAACAAGGTCACTTTGGAGA  298

seq1  ACTGGAACACATCTGGGCCCTGAACTGAATCAAAGCTGAAAT-AAAATGT  335
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACTGGAACACATCTGGGCCCTGAACTGAATCAAAGCTGAAATAAAAATGT  348

seq1  GTTTTATTGATAAAATATGCATCTGTAAAAA-CCCTAGCAAATGTTACAT  384
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTTTTATTGATAAAATATGCATCTGTAAAAACCCCTAGCAAATGTTACAT  398

seq1  TAAGGTGAATTGGCAGGCGTGTGGCATTTCCACAGAAATGTATCTCTATG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGAATTGGCAGGCGTGTGGCATTTCCACAGAAATGTATCTCTATG  448

seq1  CTACTTTCCCTCCTGTCTTCCTTTCATCTGTCCAGTGTTGCATGCACATT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTCCCTCCTGTCTTCCTTTCATCTGTCCAGTGTTGCATGCACATT  498

seq1  TGGGTTTCTTTGAAAACTTCTGAGGCAAATACTTCTGGAAACTGATTTCC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTCTTTGAAAACTTCTGAGGCAAATACTTCTGGAAACTGATTTCC  548

seq1  ATCTTTGGCAGCAGCTTGGAATGTGGAAATTTGTTTTGTTTTTGTGACTT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGGCAGCAGCTTGGAATGTGGAAATTTGTTTTGTTTTTGTGACTT  598

seq1  TGACTTATTTATTTTTGTTGTTGTTTATGGTTCTGCAGAATAAAGCCCAG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTATTTATTTTTGTTGTTGTTTATGGTTCTGCAGAATAAAGCCCAG  648

seq1  AGTCTTATGTATGAGAAGCATTCACTAGACCACTAACCTACCATTGTACC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTATGTATGAGAAGCATTCACTAGACCACTAACCTACCATTGTACC  698

seq1  ACCAGCCTGATTGCATCACTTTAAAAGGAAATAAGATCTACCCAGGGCTA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCTGATTGCATCACTTTAAAAGGAAATAAGATCTACCCAGGGCTA  748

seq1  GAAAAGTGTTTGCCATGCAAACAAGTCAAGGAACTGAGCTTGATTTCCAT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGTTTGCCATGCAAACAAGTCAAGGAACTGAGCTTGATTTCCAT  798

seq1  TATCCCTGCTGAAAAACCAAGAGCTGGGACTGGAGGTACAAACATATAAC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTGCTGAAAAACCAAGAGCTGGGACTGGAGGTACAAACATATAAC  848

seq1  CCCAGGGGTGGAGAGGCCAAGGCCAGCTGATGGCTTCCTGCCTACCCAGG  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGGTGGAGAGGCCAAGGCCAGCTGATGGCTTCCTGCCTACCCAGG  898

seq1  ATACACAAATAAGAAATCTTGCCTAAAATGGTGGAGAGTCCCTAAAACAC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAAATAAGAAATCTTGCCTAAAATGGTGGAGAGTCCCTAAAACAC  948

seq1  AACAAGCAAGGTTGCCTTCTGGCCTCTATACACACATACCTATACATATA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCAAGGTTGCCTTCTGGCCTCTATACACACATACCTATACATATA  998

seq1  CACCATATACATGCATGTGTGTCTGCAAACTCATGTGCAATTTTACACAT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATATACATGCATGTGTGTCTGCAAACTCATGTGCAATTTTACACAT  1048

seq1  GAACACACACACACACACACACACACACACACAGATCTACATTAATTAAA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACACACACACACACACACACACACACACAGATCTACATTAATTAAA  1098

seq1  GGTGAACAAAACACATTATATTCATGTATGGAATTC  1120
      ||||||||||||||||||||||||||||||||||||
seq2  GGTGAACAAAACACATTATATTCATGTATGGAATTC  1134


seq1: chr6_77624896_77625669
seq2: B6Ng01-338E08.g_65_838

seq1  GAATTCTTCCTTAACACTTCCCAGCTTCAGGTGATCTGCTTCCAATGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTTAACACTTCCCAGCTTCAGGTGATCTGCTTCCAATGGTG  50

seq1  TTACTGGACTTTTACCCCAAATACTTCATGCTCTGCTTCATTTTCACCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGACTTTTACCCCAAATACTTCATGCTCTGCTTCATTTTCACCTA  100

seq1  ATAGTTTCCTACTTCTGTATCTGGGAGTGTTTTTTTTTTTCTCTTGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTCCTACTTCTGTATCTGGGAGTGTTTTTTTTTTTCTCTTGTGAG  150

seq1  ATCAGTCACATTGAATATATATTTGCATATATCAAATTTTCATATATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCACATTGAATATATATTTGCATATATCAAATTTTCATATATATG  200

seq1  AAATGTATTTATATATATATGAAAATTTAATTAAAGGTATGGCTGCCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATTTATATATATATGAAAATTTAATTAAAGGTATGGCTGCCTAA  250

seq1  TAACAGGGGTTAAGAAAAAGAAACAAAAATTCTAGCAGAATATCTTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGGGTTAAGAAAAAGAAACAAAAATTCTAGCAGAATATCTTTTTG  300

seq1  AGTTTTGTTTTTGCTTTCTGTCTGGCAATAAAAAGATAATTTGTGGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGTTTTTGCTTTCTGTCTGGCAATAAAAAGATAATTTGTGGTGTT  350

seq1  CCAGTATAAGAATATTGGCTTTTTTTTGGATGGCAATCAATGAAGAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATAAGAATATTGGCTTTTTTTTGGATGGCAATCAATGAAGAGCAG  400

seq1  AAAACCAAACCTCAATAACTGGAGTGATCACCTATCCCCCCCCCCTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAACCTCAATAACTGGAGTGATCACCTATCCCCCCCCCCTCCCA  450

seq1  TCCCAGGAGGTTCACCTTCCTTTCCTTGTTGGCTGCCATCTCACTTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGAGGTTCACCTTCCTTTCCTTGTTGGCTGCCATCTCACTTCTCA  500

seq1  AACCTCACTCTTAAAATGTTTGAAGAATGTGTTGTCTGGAAAAAATAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCACTCTTAAAATGTTTGAAGAATGTGTTGTCTGGAAAAAATAATA  550

seq1  ATTTCTGAAATAAGATTCTAATGTAAAATGTTCACTAAGATCTGCAGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAAATAAGATTCTAATGTAAAATGTTCACTAAGATCTGCAGTAG  600

seq1  ACAGCAGCAGTGTGCTTGATCACTCAAGGGTTCTCACAAACATGGTGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGCAGTGTGCTTGATCACTCAAGGGTTCTCACAAACATGGTGATT  650

seq1  CCTATGCTGTGAAAGGCAAGTGTTGGGATAGAGAGAGCTGGATTTGCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCTGTGAAAGGCAAGTGTTGGGATAGAGAGAGCTGGATTTGCACA  700

seq1  TGCTCAGCTGCAGATGAGAGTGGGGAAAGAGAAACGGAGAGAGGAAGAGG  750
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGCTCAGCTGCAGATGAGAGTGGTGAAAGAGAAACGGAGAGAGGAAGAGG  750

seq1  GAAAGGAGGGGAGAGGAGGGGAGA  774
      ||||||||||||||||||||||||
seq2  GAAAGGAGGGGAGAGGAGGGGAGA  774


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