BAC Information

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BAC

Clone NameB6Ng01-338E11
Chromosome6 (Build37)
Map Location 18,810,069 - 18,811,110
singlet/doubletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8
Downstream geneAnkrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338E11.bB6Ng01-338E11.g
ACCGA122636GA122637
length1,0481,228
definitionB6Ng01-338E11.b B6Ng01-338E11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccccacccctaagccctttaccccataaaaacccctagcttttga
gcctcggggtcgaatccactgtctcctgtgtgagatgtttcgacccgcca
ttaaactgcctcatgtgtttgcagcaagaaggattctcatgtttctttgg
gtgctctctctctctctcccgagactagagtggggggggggggtccctga
aagggggtcttacagttgcaggctttactccatgccactaagctggtgtc
ttgcccacacagttaatcttttgaatcttccaaacaaaaccaactctttt
tctctaaggatgaagcacaaattttgtcctagtacatttcccttcttcct
tcagtttccaacatagttttatttagacagtgagctggcatgttcaggac
aaccatgaggttcagtgatacatgagaattcagaggactcagcaacatga
ctgttgcagttagagtctattagagtgaaaaagtatatacgatgcaatta
aagagaaaccagctttgcttcctgtgtggctgcacataccacttctgttg
tctctggacaacaatgtctgacattatgtactaataatatccactggagc
aactcagttgagccttgctatttggggttatctggcatagacccataaat
atatgcagctcttattttgctagctttggccactgaagctcattgcattt
cagcatgtccatggctgtatgcatatgtacacttacctgtaagtttttaa
aaaactgacaagctttctgtttctatatattgctatataaccacatcttg
ccccatttctgccttcctgtgtaccaacttgaaaattcttattaaacatc
tatgctagtcactatctttaagggggccacctaagtccactgattttaca
tgcaggattccttcatggctttgtacatctttacacatagaaggattaca
tatgtggtcctgaatttgtgtaatgtctgtaatttgtgggagccgccccc
acaattcgccgtctcaagatggcgctggacatcttgtggttctagtgg

gaattcaaacaggaactacaacatggttcatgagatagaagagagaaact
caagcattgaagatgtgatagaagaaatagatataccagtcagaaaatgt
ttcatctaaaacaattcctgacacaaaacatctaggaaatataagacact
aggaaaagaccaaatataagtataataggaatagaggaaagagaagaatc
ccagttcaaaggcccagaaaatattttcaacaaaatcatagaagaaaatt
tccctaatctaaagaagatacccatagattcaagaagcatttagaataga
ttggatcagaaaaggaagtctccttgctacataaaaatcaaaactaaacc
tatagaacaaataaagaatattaaagctgcaatgaaaaaaggccaagtag
catataaaagcagacctattaaaattacagcttagttctcaatggaaact
ctaaaagccatataaatctagatatatacattcaagactctaaaatacca
tagatgctcgcccagactaatatacctagcaaaactttcaatcactatag
ggaaaaaaaggtattacatggtaaattcacatttaaattctatatatatg
tatatatatggaaaaatccaacccaaggaggttaattacactcatgaaag
cacaggaaataatctcacgtcagcaaaaccaaaacaagtgaaatacacaa
acataccaccaccactatcaccacaaccccaacaaccaccacgaccacca
tcatcaccaccaaacaacaacaacaacaacaataacaacaacaacaacaa
caacaacgaaagtaacagcaatcaacaatcactggttattgatatctctc
aatgtcaatgttctcaccttcccaagaagaagacacagactaataggaaa
agatcccaaaacagaatccatcctcctgttgcatccaagaaacacacctc
aacattaagacagatattacctcaaggtaaaaggttgggaaagatagtcc
aagcaaatggatctaaaaaacaatgtgatgttgctatttttatatctaac
aaatagactcaaactaaactgatcaaaagagatgagagagatgagtacac
ctacatattcatcaaaggaaaaatagacaaggataaagttccattcttaa
catcgataccaatcgttgtaggtagactactaagctaaggttcaacataa
tggaaccccttaccaagtgtggctggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18810069_18811110
seq2: B6Ng01-338E11.b_45_1092 (reverse)

seq1  CCACTTAGAA-CACAGGATGT-CAGCGCCATCTTGTGACGGCGAA-TGTG  47
      |||| ||||| |||| ||||| ||||||||||||| ||||||||| ||||
seq2  CCAC-TAGAACCACAAGATGTCCAGCGCCATCTTGAGACGGCGAATTGTG  49

seq1  GGGGCGGCTCCCAACAAATTACAGACAATACACAAAATTCAGGA-CACAT  96
      |||||||||||| |||||||||||||| ||||| |||||||||| |||||
seq2  GGGGCGGCTCCC-ACAAATTACAGACATTACAC-AAATTCAGGACCACAT  97

seq1  ATGTAAATCCTTCTATGTGTAAAGATGTACAAAGCCATGAAGG-ATTCTG  145
      |||| |||||||||||||||||||||||||||||||||||||| || |||
seq2  ATGT-AATCCTTCTATGTGTAAAGATGTACAAAGCCATGAAGGAATCCTG  146

seq1  CATGT-AAATCAGTGGACTTAGGTGG-CCCCTTAAAGATAGTGACTAGCA  193
      ||||| |||||||||||||||||||| |||||||||||||||||||||||
seq2  CATGTAAAATCAGTGGACTTAGGTGGCCCCCTTAAAGATAGTGACTAGCA  196

seq1  TAGATGTTTAATAAGAATTTTCAAGTTGGTACACAGGAAGGCAGAAAT-G  242
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAGATGTTTAATAAGAATTTTCAAGTTGGTACACAGGAAGGCAGAAATGG  246

seq1  GGCAAGATGTGGTTATATAGCAATATATAG-AACAGAAAGCTTGTCAGTT  291
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGCAAGATGTGGTTATATAGCAATATATAGAAACAGAAAGCTTGTCAGTT  296

seq1  TTTTAAAAACTTACAGGTAAGTGTACATATGCATACAGCCATGGACATGC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAACTTACAGGTAAGTGTACATATGCATACAGCCATGGACATGC  346

seq1  TG-AATGCAATGAGCTTCAGTGGCCAAAGCTAGCAAAATAAGAGCTGCAT  390
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGCAATGAGCTTCAGTGGCCAAAGCTAGCAAAATAAGAGCTGCAT  396

seq1  ATATTTATGGGTCTATGCCAGATAACCCCAAATAGCAAGGCTCAACTGAG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATGGGTCTATGCCAGATAACCCCAAATAGCAAGGCTCAACTGAG  446

seq1  TTGCTCCAGTGGATATTATTAGTACATAATGTCAGACATTGTTGTCCAGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCAGTGGATATTATTAGTACATAATGTCAGACATTGTTGTCCAGA  496

seq1  GACAACAGAAGTGGTATGTGCAGCCACACAGGAAGCAAAGCTGGTTTCTC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACAGAAGTGGTATGTGCAGCCACACAGGAAGCAAAGCTGGTTTCTC  546

seq1  TTTAATTGCATCGTATATACTTTTTCACTCTAATAGACTCTAACTGCAAC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTGCATCGTATATACTTTTTCACTCTAATAGACTCTAACTGCAAC  596

seq1  AGTCATGTTGCTGAGTCCTCTGAATTCTCATGTATCACTGAACCTCATGG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGTTGCTGAGTCCTCTGAATTCTCATGTATCACTGAACCTCATGG  646

seq1  TTGTCCTGAACATGCCAGCTCACTGTCTAAATAAAACTATGTTGGAAACT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTGAACATGCCAGCTCACTGTCTAAATAAAACTATGTTGGAAACT  696

seq1  GAAGGAAGAAGGGAAATGTACTAGGACAAAATTTGTGCTTCATCCTTAGA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGAAGGGAAATGTACTAGGACAAAATTTGTGCTTCATCCTTAGA  746

seq1  GAAAAAGAGTTGGTTTTGTTTGGAAGATTCAAAAGATTAACTGTGTGGGC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAGTTGGTTTTGTTTGGAAGATTCAAAAGATTAACTGTGTGGGC  796

seq1  AAGACACCAGCTTAGTGGCATGGAGTAAAGCCTGCAACTGTAAGACCCCC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACCAGCTTAGTGGCATGGAGTAAAGCCTGCAACTGTAAGACCCCC  846

seq1  TTTCAGGGACCCCCCCCCCCCACTCTAGTCTCGGGAGAGAGAGAGAGAGC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGGACCCCCCCCCCCCACTCTAGTCTCGGGAGAGAGAGAGAGAGC  896

seq1  ACCCAAAGAAACATGAGAATCCTTCTTGCTGCAAACACATGAGGCAGTTT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAGAAACATGAGAATCCTTCTTGCTGCAAACACATGAGGCAGTTT  946

seq1  AATGGCGGGTCGAAACATCTCACACAGGAGACAGTGGATTCGACCCCGAG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCGGGTCGAAACATCTCACACAGGAGACAGTGGATTCGACCCCGAG  996

seq1  GCTCAAAAGCTAGGGGTTTTTATGGGGTAAAGGGCTTAGGGGTGGGGAAT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAAAGCTAGGGGTTTTTATGGGGTAAAGGGCTTAGGGGTGGGGAAT  1046

seq1  TC  1042
      ||
seq2  TC  1048


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