BAC Information

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BAC

Clone NameB6Ng01-338K14
Chromosome6 (Build37)
Map Location 128,000,717 - 128,095,585
singlet/doubletdoublet
Overlap geneTspan9
Upstream geneFgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578, EG640703, LOC100043848, Parp11, Efcab4b, Prmt8, Tspan11
Downstream geneLOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338K14.bB6Ng01-338K14.g
ACCGA122887GA122888
length1,155474
definitionB6Ng01-338K14.b B6Ng01-338K14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,000,717 - 128,001,883)(128,095,105 - 128,095,585)
sequence
gaattcacagtaaattcctcaccgtgtgtattttgtgatctacgtgccaa
tggtacctgagtcagtccatggcacaaactgcagttagtagatagtgcag
agtgactgtttttattctaatcatcactggtctgcctcatggaataggtt
ccttccagagcccaactcccatccaggtaccaggctctaactgggaagac
atgagtgtcaacaccgactttacttctcttcccctcgctggaactggaga
ataactggacgcccagagagaactcagacgcttctccctcggctctctgc
ttgcacacctgagcctagcatccatccctggctgaccttctccccgaccg
ctgacccctggccatgctccataacccaactggagattatcagataccct
gcttgctctcccccaggcccctccctactcactcatcgccttctactaca
caagcctttgcaactgtctttctgagataaatctggccataagctgcttc
aacttcaaaatcaagttttattccaaactcgggggactttgcgtagcatt
cccatagtctggcaggttcttccaatcaaactcctatgtgagcttcaaga
cccaactcaaacctcacctcttccttgctcagttcctccccttctaaatc
ccttctagttgggccagccagtgtctctgtgatggctctgttaatgctgc
agtgcctgtgtgcctcgtgcccccttcccagacaaagctccttgagggaa
gtgcactgtgggttctacgagcctcagatccccaaacctgaacttgatga
tttatttattcagtgtgctgatctgccagaccctaaaacctctcagtgaa
tgttgctgaccctgcgaaatcacaaatcaaggttccgatggtaattttat
aaatgatagacttcaatcaatacacggaaagagccgtgtttgacttgaga
cccgggtttccttcagagagacggtgtgaggatatgatgagagggacctc
gctggagacacggggctgacagtgctcgctctgaaagcactgatgactgt
gaagatgggaaaccatttcagataagactgaggtacagtgaccgggctgc
actgtgacccaaacgatcccatgtccatgcctccactgctctaacttgtt
tacca
ttcagaagcctggtacccatgggttttggagttctttctccaaaagcttc
actgtaaggtttatttgcgttttcccttcagtggacacaatcacagcatg
cttaccacacagctcataggtcactttgcttctttgtgctgaataattaa
ttccttttccttcagcgtttccaatagcattttcctgaagctatgagctc
tacaggctcccagctctctctgtgcctggctgtgtcaaagtgagttgggc
tacctggcttacgactgaggagagatatctcaaggttctcgtaattccaa
gatgtcagatctgctcatgttcctttcaagtgaggtgtgtgtgtgtgtgt
gtaggggtggaattagcattcacccaatccattttcattatcttagacaa
tcctcacatgtcctaaacttggaggggtgctattggtgtgaggagcccat
ggcctacagtctctgcctagaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_128000717_128001883
seq2: B6Ng01-338K14.b_47_1201

seq1  GAATTCACAGTAAATTCCTCACCGTGTGTA-TTGGTGATCTACGTGCCAA  49
      |||||||||||||||||||||||||||||| || ||||||||||||||||
seq2  GAATTCACAGTAAATTCCTCACCGTGTGTATTTTGTGATCTACGTGCCAA  50

seq1  TGGTACCTGAGTCAGTCCATGGCACAAACTGCAGTTAGTAGATAGTGCAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACCTGAGTCAGTCCATGGCACAAACTGCAGTTAGTAGATAGTGCAG  100

seq1  AGTGACTGTTTTTATTCTAATCATCACTGGTCTGCCTCATGGAATAGGTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTGTTTTTATTCTAATCATCACTGGTCTGCCTCATGGAATAGGTT  150

seq1  CCTTCCAGAGCCCAACTCCCATCCAGGTACCAGGCTCTAACTGGGAAGAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGAGCCCAACTCCCATCCAGGTACCAGGCTCTAACTGGGAAGAC  200

seq1  ATGAGTGTCAACACCGACTTTACTTCTCTTCCCCTCGCTGGAACTGGAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGTCAACACCGACTTTACTTCTCTTCCCCTCGCTGGAACTGGAGA  250

seq1  ATAACTGGACGCCCAGAGAGAACTCAGACGCTTCTCCCTCGGCTCTCTGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGGACGCCCAGAGAGAACTCAGACGCTTCTCCCTCGGCTCTCTGC  300

seq1  TTGCACACCTGAGCCTAGCATCCATCCCTGGCTGACCTTCTCCCCGACCG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACACCTGAGCCTAGCATCCATCCCTGGCTGACCTTCTCCCCGACCG  350

seq1  CTGACCCCTGGCCATGCTCCATAACCCAACTGGAGATTATCAGATACCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCCTGGCCATGCTCCATAACCCAACTGGAGATTATCAGATACCCT  400

seq1  GCTTGCTCTCCCCCAGGCCCCTCCCTACTCACTCATCGCCTTCTACTACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTCTCCCCCAGGCCCCTCCCTACTCACTCATCGCCTTCTACTACA  450

seq1  CAAGCCTTTGCAACTGTCTTTCTGAGATAAATCTGGCCATAAGCTGCTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTTTGCAACTGTCTTTCTGAGATAAATCTGGCCATAAGCTGCTTC  500

seq1  AACTTCAAAATCAAGTTTTATTCCAAACTCGGGGGACTTTGCGTAGCATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAAAATCAAGTTTTATTCCAAACTCGGGGGACTTTGCGTAGCATT  550

seq1  CCCATAGTCTGGCAGGTTCTTCCAATCAAACTCCTATGTGAGCTTCAAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGTCTGGCAGGTTCTTCCAATCAAACTCCTATGTGAGCTTCAAGA  600

seq1  CCCAACTCAAACCTCACCTCTTCCTTGCTCAGTTCCTCCCCTTCTAAATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTCAAACCTCACCTCTTCCTTGCTCAGTTCCTCCCCTTCTAAATC  650

seq1  CCTTCTAGTTGGGCCAGCCAGTGTCTCTGTGATGGCTCTGTTAATGCTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAGTTGGGCCAGCCAGTGTCTCTGTGATGGCTCTGTTAATGCTGC  700

seq1  AGTGCCTGTGTGCCTCGTGCCCCCTTCCCAGACAAAGCTCCTTGAGGGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTGTGTGCCTCGTGCCCCCTTCCCAGACAAAGCTCCTTGAGGGAA  750

seq1  GTGCACTGTGGGTTCTACGAGCCTCAGATCCCCAAACCTGAACTTGATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTGTGGGTTCTACGAGCCTCAGATCCCCAAACCTGAACTTGATGA  800

seq1  TTTATTTATTCAGTGTGCTGATCTGCCAGACCCTAAAACCTCTCAGTGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTCAGTGTGCTGATCTGCCAGACCCTAAAACCTCTCAGTGAA  850

seq1  TGTTGCTGACCCTGCGAAATCACAAATCAAGGTTCCGATGGTAATTTTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTGACCCTGCGAAATCACAAATCAAGGTTCCGATGGTAATTTTAT  900

seq1  AAATGATAGACTTCAATCAATACACGGAAAGAGCCGTGTTTGACTTGAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATAGACTTCAATCAATACACGGAAAGAGCCGTGTTTGACTTGAGA  950

seq1  CCC-GGTTTCCTTCAGAGAGACGGTGTGAGGATATGATGAGAGGGACCTC  998
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGTTTCCTTCAGAGAGACGGTGTGAGGATATGATGAGAGGGACCTC  1000

seq1  GCTGGAAGACACGGGGCTGACAGGTGCTCGCTCTGAAAGCACTGATGACT  1048
      ||||| |||||||||||||||| |||||||||||||||||||||||||||
seq2  GCTGG-AGACACGGGGCTGACA-GTGCTCGCTCTGAAAGCACTGATGACT  1048

seq1  GTGAAGATGGGAAACCCAATTTCAAGAATTAAAGAACCTGAGGTACAGTG  1098
      ||||||||||||||||  ||||| |||    ||||  |||||||||||||
seq2  GTGAAGATGGGAAACC--ATTTC-AGA---TAAGA--CTGAGGTACAGTG  1090

seq1  ACCGGGCCTGCACTGTGACCCAAACGGATCCCCATGTTCAATGCCTCCAC  1148
      |||||| |||||||||||||||||| ||| |||||| || ||||||||||
seq2  ACCGGG-CTGCACTGTGACCCAAAC-GAT-CCCATG-TCCATGCCTCCAC  1136

seq1  TTGCTCTAACCTG-TTACCA  1167
       ||||||||| || ||||||
seq2  -TGCTCTAACTTGTTTACCA  1155

seq1: chr6_128095105_128095585
seq2: B6Ng01-338K14.g_65_544 (reverse)

seq1  TCTTCTAGGCCGTGGGCTCTAGGCCATGGGCTCCTCACACCAATAGCACC  50
      |||||||||| |  | || |||||||||||||||||||||||||||||||
seq2  TCTTCTAGGCAG-AGACTGTAGGCCATGGGCTCCTCACACCAATAGCACC  49

seq1  CCTCCAAGTTTAGGACATGTGAGGATTGTCTAAGATAATGAAAATGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAGTTTAGGACATGTGAGGATTGTCTAAGATAATGAAAATGGATT  99

seq1  GGGTGAATGCTAATTCCACCCCTACACACACACACACACACCTCACTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAATGCTAATTCCACCCCTACACACACACACACACACCTCACTTGA  149

seq1  AAGGAACATGAGCAGATCTGACATCTTGGAATTACGAGAACCTTGAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACATGAGCAGATCTGACATCTTGGAATTACGAGAACCTTGAGATA  199

seq1  TCTCTCCTCAGTCGTAAGCCAGGTAGCCCAACTCACTTTGACACAGCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTCAGTCGTAAGCCAGGTAGCCCAACTCACTTTGACACAGCCAG  249

seq1  GCACAGAGAGAGCTGGGAGCCTGTAGAGCTCATAGCTTCAGGAAAATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAGAGAGCTGGGAGCCTGTAGAGCTCATAGCTTCAGGAAAATGCT  299

seq1  ATTGGAAACGCTGAAGGAAAAGGAATTAATTATTCAGCACAAAGAAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAACGCTGAAGGAAAAGGAATTAATTATTCAGCACAAAGAAGCAA  349

seq1  AGTGACCTATGAGCTGTGTGGTAAGCATGCTGTGATTGTGTCCACTGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCTATGAGCTGTGTGGTAAGCATGCTGTGATTGTGTCCACTGAAG  399

seq1  GGAAAACGCAAATAAACCTTACAGTGAAGCTTTTGGAGAAAGAACTCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACGCAAATAAACCTTACAGTGAAGCTTTTGGAGAAAGAACTCCAA  449

seq1  AACCCATGGGTACCAGGCTTCTGAAGAATTC  481
      |||||||||||||||||||||||||||||||
seq2  AACCCATGGGTACCAGGCTTCTGAAGAATTC  480