BAC Information

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BAC

Clone NameB6Ng01-338M02
Chromosome6 (Build37)
Map Location 18,177,448 - 18,292,901
singlet/doubletdoublet
Overlap geneCftr
Upstream geneCav2, Cav1, Met, Capza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751
Downstream geneCttnbp2, EG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338M02.bB6Ng01-338M02.g
ACCGA122950GA122951
length1,1391,139
definitionB6Ng01-338M02.b B6Ng01-338M02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,291,762 - 18,292,901)(18,177,448 - 18,178,549)
sequence
gaattccattcaagtgttcttagagaataagggatgacactcatattgct
aaatctaggcaacagtccttgccttatttaatcaatctacaacatttaaa
attggtcactattatttttcttaaaacacattcttaaactggatttgaac
acctttagagttttcctctctacaacaccccatcttccctctctttccaa
gttacattgcttcatactttctccaccatatttacccaaagcctcaatta
tctaatctagctaggctttctaggaatttaagttgcctacagtacactta
ggaatcaggacaaaatatcagtgctgagggctggggctatattccagtgg
aagaaaacttgcttagtagccatgaggcttttgggttcaatccttagcac
cacatctgtgtatatccatgtaccaatagctcattttgcatgcacctgaa
ctgcacaaagagatatctcaaaaaccaaactgccaaggttgagtcaatgc
tctccaacaagcaccagaagttgtcctatagttctcattggctccatggt
aaaactaataaataagacgtgcctcatgcctcctgtgttaaacacaatct
gtaggtcttcattttggtaatttatatttgatgtttttgtatttctggat
tcctctcaacttcaggctcatatgtcaactgtctgctgttcctctttgaa
ttcccaaacttaatgtctttaaaacattccaaaatctcaaactgcagcca
tattttctcctccattcttaacagtctcaacaaaacattcaatatctata
actttttagaccaaaattgtgaatatcttccttacatcctcttctctcta
gtctgcaatgcattggcagattttgctgttttagcctcggtattgcttct
atttgttgcgagcttctgtgttccctcatatccaagactggcatagccct
gattagcttccaagacagtagagttcagtgctatgggttgtagattgctg
tcactatagactattacagtacacctgtctccctgctttcaacaccccat
ggtgtcagcctggtcttcaatggggctgcaaaatgggtcctactcttgtt
ctctattcaaataccttattttcttaatcacagccgagt
gaattctctgatggaggcctttctcagagaactgagaaatagttctatga
agtccttctccttccctttatataaggagcaatgattatgatgttgctcg
taaagagagtgttaaaaaaaattgttgttcttttcacttgtactagcctt
gaactggtacatgaataattgtcagggtttcattagaaattcatattcta
tataacagtataagaaagaaacaattgcactgatatctaatgtataaaac
taatttcatacattaatatatttaaagaatatattttgactatgatgagt
cctactgcttggtactttaactttaagacaattgtaacgttaatttatta
agaaacaatttctaatttaattgttaaaatccatacaagacactgtaatg
ttagagtggaagaagatataacaatacatttttgctattgtgattctaca
attgaaagatttttgtcttcattgactaggatttcctgcagaaacaagag
tataaagtactggagtataacttaatgaccacaggcataatcatggaaaa
tgtaacagcattttgggaggaggtgagatttctaaatatggtcgattttt
aaaatatgtaaacaattgtgctttttccttttcttgcacctaaatttcta
ctcaataacatataagattcaaaagatattatatctcatagggatgtaag
gagggctatcctcttttataaggtgaaaagtgggtaaccaggaatattaa
aatgcagcataaagtgccttttatttctttaaagtcatataatttgattt
catataatgggccaggaaagatgattaccttcgatactagattctaaatc
cctgtctctgcaatacactttccatgtaatcttaatcatatttatgtttc
aagttatttaagctcaagtggtcttcctgttgtaaaatagaacattaatt
tccctcactgactaagaatgaatttacactgggtctgttcattattgcac
actttgcaaaataatgggtcctttcagtggaagattaaccttctctaagt
catgaactctcttagtcttcccctggccattcaccttaaaattgaatgaa
gccactgtgatgtttcccatgagcagctttccagcagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18291762_18292901
seq2: B6Ng01-338M02.b_44_1182 (reverse)

seq1  ACTC-GCTGTGATTAAAGAAATAAGTATTTTGAATAGAG-ACAAGAGTAG  48
      |||| |||||||||||  |||||||   ||||||||||| ||||||||||
seq2  ACTCGGCTGTGATTAAGAAAATAAGGTATTTGAATAGAGAACAAGAGTAG  50

seq1  GACCCATTTTTGCAGCCCCATTTGGAAGACCAGGCTGACACCATGGGGTG  98
      |||||| |||||||||||||||  ||||||||||||||||||||||||||
seq2  GACCCA-TTTTGCAGCCCCATT--GAAGACCAGGCTGACACCATGGGGTG  97

seq1  TTGAAAGCAGGGAGACAGGTGTACTGTAATAGTCTATAGTGACAGCAATC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGCAGGGAGACAGGTGTACTGTAATAGTCTATAGTGACAGCAATC  147

seq1  TACAA-CCATAGCACTGAACTCTACTTGTCTTGGAAGCTAATCAGGGCTA  197
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  TACAACCCATAGCACTGAACTCTAC-TGTCTTGGAAGCTAATCAGGGCTA  196

seq1  TGCCAGTCTTGGATATGAGGGAACACAGAAGCTCGCAACAAATAGAAGCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTCTTGGATATGAGGGAACACAGAAGCTCGCAACAAATAGAAGCA  246

seq1  ATACCGAGGCTAAAACAGCAAAATCTGCCAATGCATTGCAGACTAGAGAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCGAGGCTAAAACAGCAAAATCTGCCAATGCATTGCAGACTAGAGAG  296

seq1  AAGAGGATGTAAGGAAGATATTCACAATTTTGGTCTAAAAAGTTATAGAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGATGTAAGGAAGATATTCACAATTTTGGTCTAAAAAGTTATAGAT  346

seq1  ATTGAATGTTTTGTTGAGACTGTTAAGAATGGAGGAGAAAATATGGCTGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATGTTTTGTTGAGACTGTTAAGAATGGAGGAGAAAATATGGCTGC  396

seq1  AGTTTGAGATTTTGGAATGTTTTAAAGACATTAAGTTTGGGAATTCAAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAGATTTTGGAATGTTTTAAAGACATTAAGTTTGGGAATTCAAAG  446

seq1  AGGAACAGCAGACAGTTGACATATGAGCCTGAAGTTGAGAGGAATCCAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAGCAGACAGTTGACATATGAGCCTGAAGTTGAGAGGAATCCAGA  496

seq1  AATACAAAAACATCAAATATAAATTACCAAAATGAAGACCTACAGATTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAAAACATCAAATATAAATTACCAAAATGAAGACCTACAGATTGT  546

seq1  GTTTAACACAGGAGGCATGAGGCACGTCTTATTTATTAGTTTTACCATGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAACACAGGAGGCATGAGGCACGTCTTATTTATTAGTTTTACCATGG  596

seq1  AGCCAATGAGAACTATAGGACAACTTCTGGTGCTTGTTGGAGAGCATTGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATGAGAACTATAGGACAACTTCTGGTGCTTGTTGGAGAGCATTGA  646

seq1  CTCAACCTTGGCAGTTTGGTTTTTGAGATATCTCTTTGTGCAGTTCAGGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCTTGGCAGTTTGGTTTTTGAGATATCTCTTTGTGCAGTTCAGGT  696

seq1  GCATGCAAAATGAGCTATTGGTACATGGATATACACAGATGTGGTGCTAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCAAAATGAGCTATTGGTACATGGATATACACAGATGTGGTGCTAA  746

seq1  GGATTGAACCCAAAAGCCTCATGGCTACTAAGCAAGTTTTCTTCCACTGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGAACCCAAAAGCCTCATGGCTACTAAGCAAGTTTTCTTCCACTGG  796

seq1  AATATAGCCCCAGCCCTCAGCACTGATATTTTGTCCTGATTCCTAAGTGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGCCCCAGCCCTCAGCACTGATATTTTGTCCTGATTCCTAAGTGT  846

seq1  ACTGTAGGCAACTTAAATTCCTAGAAAGCCTAGCTAGATTAGATAATTGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGGCAACTTAAATTCCTAGAAAGCCTAGCTAGATTAGATAATTGA  896

seq1  GGCTTTGGGTAAATATGGTGGAGAAAGTATGAAGCAATGTAACTTGGAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGGGTAAATATGGTGGAGAAAGTATGAAGCAATGTAACTTGGAAA  946

seq1  GAGAGGGAAGATGGGGTGTTGTAGAGAGGAAAACTCTAAAGGTGTTCAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGAAGATGGGGTGTTGTAGAGAGGAAAACTCTAAAGGTGTTCAAA  996

seq1  TCCAGTTTAAGAATGTGTTTTAAGAAAAATAATAGTGACCAATTTTAAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTTAAGAATGTGTTTTAAGAAAAATAATAGTGACCAATTTTAAAT  1046

seq1  GTTGTAGATTGATTAAATAAGGCAAGGACTGTTGCCTAGATTTAGCAATA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGATTGATTAAATAAGGCAAGGACTGTTGCCTAGATTTAGCAATA  1096

seq1  TGAGTGTCATCCCTTATTCTCTAAGAACACTTGAATGGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTCATCCCTTATTCTCTAAGAACACTTGAATGGAATTC  1139

seq1: chr6_18177448_18178549
seq2: B6Ng01-338M02.g_69_1207

seq1  GAATTCTCTGATGGAGGCCTTTCTCAGAGAACTGAGAAATAGTTCTATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGATGGAGGCCTTTCTCAGAGAACTGAGAAATAGTTCTATGA  50

seq1  AGTCCTTCTCCTTCCCTTTATATAAGGAGCAATGATTATGATGTTGCTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTCTCCTTCCCTTTATATAAGGAGCAATGATTATGATGTTGCTCG  100

seq1  TAAAGAGAGTGTTAAAAAAAATTGTTGTTCTTTTCACTTGTACTAGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGAGTGTTAAAAAAAATTGTTGTTCTTTTCACTTGTACTAGCCTT  150

seq1  GAACTGGTACATGAATAATTGTCAGGGTTTCATTAGAAATTCATATTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGTACATGAATAATTGTCAGGGTTTCATTAGAAATTCATATTCTA  200

seq1  TATAACAGTATAAGAAAGAAACAATTGCACTGATATCTAATGTATAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAGTATAAGAAAGAAACAATTGCACTGATATCTAATGTATAAAAC  250

seq1  TAATTTCATACATTAATATATTTAAAGAATATATTTTGACTATGATGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCATACATTAATATATTTAAAGAATATATTTTGACTATGATGAGT  300

seq1  CCTACTGCTTGGTACTTTAACTTTAAGACAATTGTAACGTTAATTTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGCTTGGTACTTTAACTTTAAGACAATTGTAACGTTAATTTATTA  350

seq1  AGAAACAATTTCTAATTTAATTGTTAAAATCCATACAAGACACTGTAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAATTTCTAATTTAATTGTTAAAATCCATACAAGACACTGTAATG  400

seq1  TTAGAGTGGAAGAAGATATAACAATACATTTTTGCTATTGTGATTCTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTGGAAGAAGATATAACAATACATTTTTGCTATTGTGATTCTACA  450

seq1  ATTGAAAGATTTTTGTCTTCATTGACTAGGATTTCCTGCAGAAACAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAGATTTTTGTCTTCATTGACTAGGATTTCCTGCAGAAACAAGAG  500

seq1  TATAAAGTACTGGAGTATAACTTAATGACCACAGGCATAATCATGGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGTACTGGAGTATAACTTAATGACCACAGGCATAATCATGGAAAA  550

seq1  TGTAACAGCATTTTGGGAGGAGGTGAGATTTCTAAATATGGTCGATTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAGCATTTTGGGAGGAGGTGAGATTTCTAAATATGGTCGATTTTT  600

seq1  AAAATATGTAAACAATTGTGCTTTTTCCTTTTCTTGCACCTAAATTTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGTAAACAATTGTGCTTTTTCCTTTTCTTGCACCTAAATTTCTA  650

seq1  CTCAATAACATATAAGATTCAAAAGATATTATATCTCATAGGGATGTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATAACATATAAGATTCAAAAGATATTATATCTCATAGGGATGTAAG  700

seq1  GAGGGCTATCCTCTTTTATAAGGTGAAAAGTGGGTAACCAGGAATATT-A  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAGGGCTATCCTCTTTTATAAGGTGAAAAGTGGGTAACCAGGAATATTAA  750

seq1  AATGCAGCATAAAGTGCC-TTTATTTCTTTAAAGTCATATAA-TTGATTT  797
      |||||||||||||||||| ||||||||||||||||||||||| |||||||
seq2  AATGCAGCATAAAGTGCCTTTTATTTCTTTAAAGTCATATAATTTGATTT  800

seq1  CATATAATGGGCCAGG-AAGATGATTACCTTCGATACTAGA-TCTAAAT-  844
      |||||||||||||||| |||||||||||||||||||||||| ||||||| 
seq2  CATATAATGGGCCAGGAAAGATGATTACCTTCGATACTAGATTCTAAATC  850

seq1  CCTGTCTCTGCAATACACTTTCCATGTAATCTAAATCATA-TTATG-TTC  892
      |||||||||||||||||||||||||||||||| ||||||| ||||| |||
seq2  CCTGTCTCTGCAATACACTTTCCATGTAATCTTAATCATATTTATGTTTC  900

seq1  AAGTTATTAAGCCTCAAGT-GTCTTCATG-TGTAAAATAG-ACATT-ATT  938
      |||||||| |  ||||||| |||||| || |||||||||| ||||| |||
seq2  AAGTTATTTAAGCTCAAGTGGTCTTCCTGTTGTAAAATAGAACATTAATT  950

seq1  TCCCT-ACTGACTAAG-ATG-ATTTACA--TGGTCTGTTCATTAGTG--C  981
      ||||| |||||||||| ||| |||||||   ||||||||||||| ||  |
seq2  TCCCTCACTGACTAAGAATGAATTTACACTGGGTCTGTTCATTATTGCAC  1000

seq1  ACTTTGC-AAATAATGG--TCTTTCAGT-GAAGATTAA-CTTCTCTAA-T  1025
      ||||||| |||||||||   |||||||| ||||||||| ||||||||| |
seq2  ACTTTGCAAAATAATGGGTCCTTTCAGTGGAAGATTAACCTTCTCTAAGT  1050

seq1  CATG-ACTC-CTAAGTCTTCCC--TGCCTATCA-CTCAGAATTG-ATG-A  1068
      |||| |||| || |||||||||   |||  ||| || | ||||| ||| |
seq2  CATGAACTCTCTTAGTCTTCCCCTGGCCATTCACCTTAAAATTGAATGAA  1100

seq1  GCCACTGAG----TTCCCATGAGCAGC-TTCCAGCAGTT  1102
      ||||||| |    |||||||||||||| |||||||||||
seq2  GCCACTGTGATGTTTCCCATGAGCAGCTTTCCAGCAGTT  1139