BAC Information

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BAC

Clone NameB6Ng01-338M07
Chromosome6 (Build37)
Map Location 84,655,270 - 84,815,946
singlet/doubletdoublet
Overlap geneExoc6b, LOC665129
Upstream geneVax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114, 4930504D19Rik, Cyp26b1
Downstream geneNpm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338M07.bB6Ng01-338M07.g
ACCGA122958GA122959
length7761,049
definitionB6Ng01-338M07.b B6Ng01-338M07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,815,171 - 84,815,946)(84,655,270 - 84,656,321)
sequence
ttttacctgtgcttttattttaattttcaaacatttattcagtgattctg
acattagtgtggttggagaatatgtatttgagggaagcaagtaggaatag
tttttggataaagatgctgaaagttgttttccatgagagttcagtaaaat
aagcatatacagtacactgctacttccttggagaagtgtgtgtgtatgtg
tgtgtgtgtgtgatatacaggtttccaaaaggacatatttagaggggagc
acaccaaccagtgcagagtaactacatagttaccacctgttgtgactgga
tggcttttgtattcacattgtccattttgtgtttcttaagttttctaaaa
gtcacgttttacttttgtaattagtaacaatttaaaacatgctactgtgt
aaaacacaaatagcaaaaatatttttaaaagaagaacaccagcaaaaagt
atcaaagtgcattacttcctagcaaattctaatgttaaggctgatgattt
gttttagaggacaatctcatctctgggtataatgtaatacaaaatattta
agtggagtttgactttagtaagtagaataacaagagaggtgaggagctta
agagtttgagactgtgttccacaagtagcatcatacagactgaatatatt
tacattacatgttacacttaggaacatatttatatacaagcaattatcat
cagtaaataaaaaagaccatgaatttgaaggagaaaagaaaagtatttat
gggaggttttggagagagggaaggaa
gaattcaatacctgtgatggtcaatattgattgtcaaattgacaatccta
taatcctactggagacaagtctctggtcacatctatgagggaatttctag
attggactaaatgaggtgagaagattcaccttaaatataagtcgctagga
tttgggactgagtgaaaaggaaacaagttcagtaccagaattcatctctc
tctcttccctgagtaagatgcaatgtgactagctgcctaaaggcctgctg
ctgtgccttctcagccactttgtactgtatcctcaaactgcaagccaaaa
gaaacccttagcaagtttttatcagggattttgtcacagtaacaagacaa
gtaagtaatacaatagttaaagaaaatgtcatttctttcatctttaagtt
acaaggcaagcaaaaattcagacaatttaaaagcagcagcagcctatatt
aggaatattaaaataatatgaaagcagtaagagactaaagtaagttagta
actattacctatatctaaaagtaacactagtatctcataactgttctaaa
tgaaaacactagaagacaaactaggagagaatctagacgcatctggactt
ggcaatgacatcttagatacaacttaaaaacatgatccatgaaagaaaga
gtttacaagcaagattttattgaaattaaaaatctgttctaggttagata
tactcagaagaatgaaaatccaagtcctaaagttggagaaaatacttatt
aaagccaatctgataagggtctcttatccaaaatatacaaggaatgctta
agactgaataatgaaaaacgacccaactgaaaacgggagagagaaacctt
atagaaatctcactaaaaaggaacctatatgtcagataggcagacagaaa
gatcctccacattatatgacatcaggaagatacgagttaaaataagaaca
ctctcacacacttagtcgcacccctagtctaaaacaagcaaacactgaaa
gatactatgaactcgagccacaggaatctcatttattgtggtagatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_84815171_84815946
seq2: B6Ng01-338M07.b_55_830 (reverse)

seq1  TTCCTTCCCTCTCTCCAAAACCTCCCATAAATACTTTTCTTTTCTCCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCCTCTCTCCAAAACCTCCCATAAATACTTTTCTTTTCTCCTTC  50

seq1  AAATTCATGGTCTTTTTTATTTACTGATGATAATTGCTTGTATATAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATGGTCTTTTTTATTTACTGATGATAATTGCTTGTATATAAATA  100

seq1  TGTTCCTAAGTGTAACATGTAATGTAAATATATTCAGTCTGTATGATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTAAGTGTAACATGTAATGTAAATATATTCAGTCTGTATGATGCT  150

seq1  ACTTGTGGAACACAGTCTCAAACTCTTAAGCTCCTCACCTCTCTTGTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGGAACACAGTCTCAAACTCTTAAGCTCCTCACCTCTCTTGTTAT  200

seq1  TCTACTTACTAAAGTCAAACTCCACTTAAATATTTTGTATTACATTATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTACTAAAGTCAAACTCCACTTAAATATTTTGTATTACATTATAC  250

seq1  CCAGAGATGAGATTGTCCTCTAAAACAAATCATCAGCCTTAACATTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGATGAGATTGTCCTCTAAAACAAATCATCAGCCTTAACATTAGAA  300

seq1  TTTGCTAGGAAGTAATGCACTTTGATACTTTTTGCTGGTGTTCTTCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAGGAAGTAATGCACTTTGATACTTTTTGCTGGTGTTCTTCTTTT  350

seq1  AAAAATATTTTTGCTATTTGTGTTTTACACAGTAGCATGTTTTAAATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTTTTGCTATTTGTGTTTTACACAGTAGCATGTTTTAAATTGT  400

seq1  TACTAATTACAAAAGTAAAACGTGACTTTTAGAAAACTTAAGAAACACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATTACAAAAGTAAAACGTGACTTTTAGAAAACTTAAGAAACACAA  450

seq1  AATGGACAATGTGAATACAAAAGCCATCCAGTCACAACAGGTGGTAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACAATGTGAATACAAAAGCCATCCAGTCACAACAGGTGGTAACTA  500

seq1  TGTAGTTACTCTGCACTGGTTGGTGTGCTCCCCTCTAAATATGTCCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTACTCTGCACTGGTTGGTGTGCTCCCCTCTAAATATGTCCTTTT  550

seq1  GGAAACCTGTATATCACACACACACACACATACACACACACTTCTCCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCTGTATATCACACACACACACACATACACACACACTTCTCCAAG  600

seq1  GAAGTAGCAGTGTACTGTATATGCTTATTTTACTGAACTCTCATGGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGCAGTGTACTGTATATGCTTATTTTACTGAACTCTCATGGAAAA  650

seq1  CAACTTTCAGCATCTTTATCCAAAAACTATTCCTACTTGCTTCCCTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTCAGCATCTTTATCCAAAAACTATTCCTACTTGCTTCCCTCAAA  700

seq1  TACATATTCTCCAACCACACTAATGTCAGAATCACTGAATAAATGTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTCTCCAACCACACTAATGTCAGAATCACTGAATAAATGTTTGA  750

seq1  AAATTAAAATAAAAGCACAGGTAAAA  776
      ||||||||||||||||||||||||||
seq2  AAATTAAAATAAAAGCACAGGTAAAA  776

seq1: chr6_84655270_84656321
seq2: B6Ng01-338M07.g_69_1117

seq1  GAATTCAATACCTGTGATGGTCAATATTGATTGTCAAATTGACAATCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATACCTGTGATGGTCAATATTGATTGTCAAATTGACAATCCTA  50

seq1  TAATCCTACTGGAGACAAGTCTCTGGTCACATCTATGAGGGAATTTCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTACTGGAGACAAGTCTCTGGTCACATCTATGAGGGAATTTCTAG  100

seq1  ATTGGACTAAATGAGGTGAGAAGATTCACCTTAAATATAAGTCGCTAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACTAAATGAGGTGAGAAGATTCACCTTAAATATAAGTCGCTAGGA  150

seq1  TTTGGGACTGAGTGAAAAGGAAACAAGTTCAGTACCAGAATTCATCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGACTGAGTGAAAAGGAAACAAGTTCAGTACCAGAATTCATCTCTC  200

seq1  TCTCTTCCCTGAGTAAGATGCAATGTGACTAGCTGCCTAAAGGCCTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCCTGAGTAAGATGCAATGTGACTAGCTGCCTAAAGGCCTGCTG  250

seq1  CTGTGCCTTCTCAGCCACTTTGTACTGTATCCTCAAACTGCAAGCCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCTTCTCAGCCACTTTGTACTGTATCCTCAAACTGCAAGCCAAAA  300

seq1  GAAACCCTTAGCAAGTTTTTATCAGGGATTTTGTCACAGTAACAAGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTTAGCAAGTTTTTATCAGGGATTTTGTCACAGTAACAAGACAA  350

seq1  GTAAGTAATACAATAGTTAAAGAAAATGTCATTTCTTTCATCTTTAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTAATACAATAGTTAAAGAAAATGTCATTTCTTTCATCTTTAAGTT  400

seq1  ACAAGGCAAGCAAAAATTCAGACAATTTAAAAGCAGCAGCAGCCTATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCAAGCAAAAATTCAGACAATTTAAAAGCAGCAGCAGCCTATATT  450

seq1  AGGAATATTAAAATAATATGAAAGCAGTAAGAGACTAAAGTAAGTTAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATTAAAATAATATGAAAGCAGTAAGAGACTAAAGTAAGTTAGTA  500

seq1  ACTATTACCTATATCTAAAAGTAACACTAGTATCTCATAACTGTTCTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTACCTATATCTAAAAGTAACACTAGTATCTCATAACTGTTCTAAA  550

seq1  TGAAAACACTAGAAGACAAACTAGGAGAGAATCTAGACGCATCTGGACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACACTAGAAGACAAACTAGGAGAGAATCTAGACGCATCTGGACTT  600

seq1  GGCAATGACATCTTAGATACAACTTAAAAACATGATCCATGAAAGAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGACATCTTAGATACAACTTAAAAACATGATCCATGAAAGAAAGA  650

seq1  GTTTACAAGCAAGATTTTATTGAAATTAAAAATCTGTTCTAGGTTAGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACAAGCAAGATTTTATTGAAATTAAAAATCTGTTCTAGGTTAGATA  700

seq1  TACTCAGAAGAATGAAAATCCAAGTCCTAAAGTTGGAGAAAATACTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGAAGAATGAAAATCCAAGTCCTAAAGTTGGAGAAAATACTTATT  750

seq1  AAAGCCAATCTGATAAGGGTCTCTTATCCAAAATATACAAGGAATGCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAATCTGATAAGGGTCTCTTATCCAAAATATACAAGGAATGCTTA  800

seq1  AGACTGAATAATGAAAAACGACCCAACTGAAAACGGGAGAGAGAAACCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAATAATGAAAAACGACCCAACTGAAAACGGGAGAGAGAAACCTT  850

seq1  ATAGAAATCTCACTAAAAAGGAACCTATATGTCAGATAGGCAGACAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATCTCACTAAAAAGGAACCTATATGTCAGATAGGCAGACAGAAA  900

seq1  GATCCTCCACATTATATGACATCAGGAAGATACGAGTTAAAATAAGAACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCCACATTATATGACATCAGGAAGATACGAGTTAAAATAAGAACA  950

seq1  CTCTCACACACTTAGTCGCACCCCTAGTCTAAAACAAGCAAACACTGAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACACACTTAGTCGCACCCCTAGTCTAAAACAAGCAAACACTGAAA  1000

seq1  GATACTATGAACTCGAGCCACAGGAATCTCATTTATTGTTGGTAGGAATG  1050
      |||||||||||||||||||||||||||||||||||||| ||||||  |||
seq2  GATACTATGAACTCGAGCCACAGGAATCTCATTTATTG-TGGTAG--ATG  1047

seq1  CA  1052
      ||
seq2  CA  1049