BAC Information

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BAC

Clone NameB6Ng01-338O04
Chromosome6 (Build37)
Map Location 21,861,398 - 21,980,277
singlet/doubletdoublet
Overlap geneIng3, A430107O13Rik
Upstream geneKcnd2, LOC100041343, Tspan12, LOC100041358
Downstream geneLOC667307, Wnt16, D6Wsu176e, LOC100040948, LOC100040959, LOC668018, LOC668022, Ptprz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338O04.bB6Ng01-338O04.g
ACCGA123041GA123042
length1,1771,088
definitionB6Ng01-338O04.b B6Ng01-338O04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,861,398 - 21,862,595)(21,979,168 - 21,980,277)
sequence
gaattcccaaagcacatttaattattttattgttttgttcttgaagcaac
attacttatgaaacaatttttcctttaaattttaatttaaagaaaattat
gccaaacacccagaacgttacttttggaacttccaagtctccagaaaaat
caggtgaatttttaaaaataccctttattctgcacaccaaaaacctactc
tgttaacctgtactcacaacctctggagaggtttagaattaatcaatgca
tagagcacaataattgctgacagccagccagagctcggaattgcaagcac
tgcctttagaaggagagcattcacaagctgaaaccagtcctgcaataacc
cagctcaagtaagaagatcagagtgacagtgctatgtgagaaagtgaaga
tgtttggaattacagggactttagaataaaaaaaaaaaacactatccagc
attgcatgaaatcaaattaaaatgaattttcttcttgtcccttacaaatg
ggatgtgactttcatttattacctagtttagtgctattggaccaaagaac
cctgtgctttctgctagccctttattctttacgccttaatattaatgcag
tctttttagttcctgtcagaaatattaaaaagatttttggaagagtattc
ggaatgttgggtaccagtgattatgttcctaccacatggtggcattggac
tgagccttttcatcttatgtgctttagtacacacaaagggtccatcgtgt
actactgccctcgtttaccacatgggaaagctagctagctagatgctgag
agaacacagcaaagaaatgacttgccaattccaaagcaacagtacaaaga
acttggcttggtacccaggtctaatcagctctagtgtctttaattttacc
actcaaattattgcaatgctcctgaaagtcaggctgccttctaagacttt
attagatctctactctgtatctactctgtaatcagtacagtgtagcccag
gagatagactttgcctgttcttcattacaagtagagcaaagggaaagaaa
ggtaactctagcagtgagttatgggagtgtcaatcctagttctgttgtat
gtctgcttgtcactccacagcctaaggtcatctggaaaggcaatcattct
agaaggccttttagaatcgtcttgaag

gaattctctgttccaaggatattttgttacataaatgataaggttcatat
atgcctttcacattttttcctttcaagaaagaagtgaaagttgttgtggt
tgttaaaatgttactatcaacgttttagtagacttttgtttcttacaaaa
cagaagggaagttgtgtcgaggttccagagagccctcaccaggtaagagg
tgagtccttttcttcagatagtgatgtgtgtatcagctgagtattgtgag
atgctatgctttggggaataccatataagcgggtaataaaatattgtcag
tttatattgtttatgctacagaagaagagataaggaaaacatgtgaaatt
gttttaaaaataacacaaaaccttctctaggcaccagagatgtattgaac
aagtatgaggaggtctcagataatagatttattgtttctaatttaagaaa
cagttatggggaaaataatgtatttttagagtttaagaagctaaaactgg
aaatactatgattcgtgtatgattcttatgtcccacaaaggtttgagtat
tggaatctcagcccctattgtagtggagggaagtggtttgaaatatttat
taagtgagaccttgtaggaagtccttaaatcaggtgggagccagcctaca
gaaaggatgtgggaacaagtctctcaccagcttcttttatgtgactcttc
tactgggaaaaaaataaaataaaataactagatttatgtaagaggaaaca
ctcagaaacaaaactgttgacagcaagccaaagtagaaggctttgaaatg
tgatcgaataaattgctatagttcacccttctaaagatatgttaatacaa
ttaggaaaaccattttaaaaaataataatatctacctctagtcccttccc
aacaaattcttatttaatttcctgcagtgagacctggcattggctttaaa
tatttaatatccttaagttattcagaggtgtgacaggctggctatagcag
attatggagcttagaacatggcattaaatgctgtacccagtagaaatact
cggttactaagagcattaaagtgccaacgagaacagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_21861398_21862595
seq2: B6Ng01-338O04.b_44_1220

seq1  GAATTCCCAAAGCACATTTAATTATTTTATTGTTTTGTTCTTGAAGCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAAGCACATTTAATTATTTTATTGTTTTGTTCTTGAAGCAAC  50

seq1  ATTACTTATGAAACAATTTTTCCTTTAAATTTTAATTTAAAGAAAATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTATGAAACAATTTTTCCTTTAAATTTTAATTTAAAGAAAATTAT  100

seq1  GCCAAACACCCAGAACGTTACTTTTGGAACTTCCAAGTCTCCAGAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAACACCCAGAACGTTACTTTTGGAACTTCCAAGTCTCCAGAAAAAT  150

seq1  CAGGTGAATTTTTAAAAATACCCTTTATTCTGCACACCAAAAACCTACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGAATTTTTAAAAATACCCTTTATTCTGCACACCAAAAACCTACTC  200

seq1  TGTTAACCTGTACTCACAACCTCTGGAGAGGTTTAGAATTAATCAATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACCTGTACTCACAACCTCTGGAGAGGTTTAGAATTAATCAATGCA  250

seq1  TAGAGCACAATAATTGCTGACAGCCAGCCAGAGCTCGGAATTGCAAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCACAATAATTGCTGACAGCCAGCCAGAGCTCGGAATTGCAAGCAC  300

seq1  TGCCTTTAGAAGGAGAGCATTCACAAGCTGAAACCAGTCCTGCAATAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTAGAAGGAGAGCATTCACAAGCTGAAACCAGTCCTGCAATAACC  350

seq1  CAGCTCAAGTAAGAAGATCAGAGTGACAGTGCTATGTGAGAAAGTGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAAGTAAGAAGATCAGAGTGACAGTGCTATGTGAGAAAGTGAAGA  400

seq1  TGTTTGGAATTACAGGGACTTTAGAATAAAAAAAAAAAACACTATCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGAATTACAGGGACTTTAGAATAAAAAAAAAAAACACTATCCAGC  450

seq1  ATTGCATGAAATCAAATTAAAATGAATTTTCTTCTTGTCCCTTACAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATGAAATCAAATTAAAATGAATTTTCTTCTTGTCCCTTACAAATG  500

seq1  GGATGTGACTTTCATTTATTACCTAGTTTAGTGCTATTGGACCAAAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGACTTTCATTTATTACCTAGTTTAGTGCTATTGGACCAAAGAAC  550

seq1  CCTGTGCTTTCTGCTAGCCCTTTATTCTTTACGCCTTAATATTAATGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCTTTCTGCTAGCCCTTTATTCTTTACGCCTTAATATTAATGCAG  600

seq1  TCTTTTTAGTTCCTGTCAGAAATATTAAAAAGATTTTTGGAAGAGTATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTAGTTCCTGTCAGAAATATTAAAAAGATTTTTGGAAGAGTATTC  650

seq1  GGAATGTTGGGTACCAGTGATTATGTTCCTACCACATGGTGGCATTGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTTGGGTACCAGTGATTATGTTCCTACCACATGGTGGCATTGGAC  700

seq1  TGAGCCTTTTCATCTTATGTGCTTTAGTACACACAAAGGGTCCATCGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTTTTCATCTTATGTGCTTTAGTACACACAAAGGGTCCATCGTGT  750

seq1  ACTACTGCCCTCGTTTACCACATGGGAAAGCTAGCTAGCTAGATGCTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGCCCTCGTTTACCACATGGGAAAGCTAGCTAGCTAGATGCTGAG  800

seq1  AGAACACAGCAAAGAAATGACTTGCCAATTCCAAAGCAACAGTACAAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACAGCAAAGAAATGACTTGCCAATTCCAAAGCAACAGTACAAAGA  850

seq1  ACTTGGCTTGGTACCCAGGTCTAATCAGCTCTAGTGTCTTTAATTTTACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCTTGGTACCCAGGTCTAATCAGCTCTAGTGTCTTTAATTTTACC  900

seq1  ACTCAAATTATTGCAATGCTCCTGAAAGTCAGGCTGCCTTCTAAGACTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAATTATTGCAATGCTCCTGAAAGTCAGGCTGCCTTCTAAGACTTT  950

seq1  ATTAGATCTCTACTCTGTATCTACTCTGTTAATCAGTACAGTGTAGCCCA  1000
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTAGATCTCTACTCTGTATCTACTCTG-TAATCAGTACAGTGTAGCCCA  999

seq1  GGAGATAAGAACTTTGCCTG-TCTTCAATTACAAAGTAAGAAGCAAAGGG  1049
      |||||||   |||||||||| ||||| ||||| |||||   |||||||||
seq2  GGAGATA--GACTTTGCCTGTTCTTC-ATTAC-AAGTA--GAGCAAAGGG  1043

seq1  AAAGAAAGGTTAACTCTAGCAGTGAGTTATGGGGAAGGTGTCAATCCTAG  1099
      ||||||||| |||||||||||||||||||||||    |||||||||||||
seq2  AAAGAAAGG-TAACTCTAGCAGTGAGTTATGGG---AGTGTCAATCCTAG  1089

seq1  TTCTGTTTGTATGTCTGCTTGTCAACTTCACACAAGCTAGGGTCATCTGG  1149
      ||||| ||||||||||||||||| |||   ||||  ||| |||||||| |
seq2  TTCTG-TTGTATGTCTGCTTGTC-ACT--CCACAGCCTAAGGTCATCT-G  1134

seq1  GAAAAGCAATCCCAACCAAGAAAAGGCCTCTTTAAGAATCGTCTTGAAG  1198
      |||| |||||  ||  | ||  |||||  |||| |||||||||||||||
seq2  GAAAGGCAAT--CATTCTAG--AAGGC--CTTTTAGAATCGTCTTGAAG  1177


seq1: chr6_21979168_21980277
seq2: B6Ng01-338O04.g_64_1151 (reverse)

seq1  TGCTGTTCTCTGTGTGCACCTTTTTATTTGCTTCTTAAGTAAAACGAGTA  50
      |||||||||| ||  ||||   ||||  ||| |||| ||| || ||||||
seq2  TGCTGTTCTC-GTTGGCAC---TTTA-ATGC-TCTT-AGT-AACCGAGTA  42

seq1  TTTCTTAACTTGGGGTACAGGCATTTCTATGCCATGGTTTCTAAGGCTTC  100
      |||||  |||  ||||||| ||||||  ||||||||  |||||||   ||
seq2  TTTCT--ACT--GGGTACA-GCATTT-AATGCCATG--TTCTAAG--CTC  82

seq1  CATATCCCTGCTATAGCCAGCCTGTTCACACCTCTGAATAACTTAAGGAT  150
      ||||   ||||||||||||||||| |||||||||||||||||||||||||
seq2  CATA-ATCTGCTATAGCCAGCCTG-TCACACCTCTGAATAACTTAAGGAT  130

seq1  ATTAAAATATTTTAAGCCAATGCCCAGGTCTCACTGCAGGAAATTAAATA  200
      ||| |||||||| ||||||||| |||||||||||||||||||||||||||
seq2  ATT-AAATATTTAAAGCCAATG-CCAGGTCTCACTGCAGGAAATTAAATA  178

seq1  AGAATTTGTTGGGAAGGGACTAGAGGTAGATATTATTATTTTTTAAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTGTTGGGAAGGGACTAGAGGTAGATATTATTATTTTTTAAAATG  228

seq1  GTTTTCCTAATTGTATTAACATATCTTTAGAAGGGTGAACTATAGCAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTAATTGTATTAACATATCTTTAGAAGGGTGAACTATAGCAATT  278

seq1  TATTCGATCACATTTCAAAGCCTTCTACTTTGGCTTGCTGTCAACAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCGATCACATTTCAAAGCCTTCTACTTTGGCTTGCTGTCAACAGTTT  328

seq1  TGTTTCTGAGTGTTTCCTCTTACATAAATCTAGTTATTTTATTTTATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGAGTGTTTCCTCTTACATAAATCTAGTTATTTTATTTTATTTT  378

seq1  TTTCCCAGTAGAAGAGTCACATAAAAGAAGCTGGTGAGAGACTTGTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGTAGAAGAGTCACATAAAAGAAGCTGGTGAGAGACTTGTTCCC  428

seq1  ACATCCTTTCTGTAGGCTGGCTCCCACCTGATTTAAGGACTTCCTACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTTTCTGTAGGCTGGCTCCCACCTGATTTAAGGACTTCCTACAAG  478

seq1  GTCTCACTTAATAAATATTTCAAACCACTTCCCTCCACTACAATAGGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACTTAATAAATATTTCAAACCACTTCCCTCCACTACAATAGGGGC  528

seq1  TGAGATTCCAATACTCAAACCTTTGTGGGACATAAGAATCATACACGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTCCAATACTCAAACCTTTGTGGGACATAAGAATCATACACGAAT  578

seq1  CATAGTATTTCCAGTTTTAGCTTCTTAAACTCTAAAAATACATTATTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTATTTCCAGTTTTAGCTTCTTAAACTCTAAAAATACATTATTTTC  628

seq1  CCCATAACTGTTTCTTAAATTAGAAACAATAAATCTATTATCTGAGACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAACTGTTTCTTAAATTAGAAACAATAAATCTATTATCTGAGACCT  678

seq1  CCTCATACTTGTTCAATACATCTCTGGTGCCTAGAGAAGGTTTTGTGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATACTTGTTCAATACATCTCTGGTGCCTAGAGAAGGTTTTGTGTTA  728

seq1  TTTTTAAAACAATTTCACATGTTTTCCTTATCTCTTCTTCTGTAGCATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAACAATTTCACATGTTTTCCTTATCTCTTCTTCTGTAGCATAA  778

seq1  ACAATATAAACTGACAATATTTTATTACCCGCTTATATGGTATTCCCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATAAACTGACAATATTTTATTACCCGCTTATATGGTATTCCCCAA  828

seq1  AGCATAGCATCTCACAATACTCAGCTGATACACACATCACTATCTGAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGCATCTCACAATACTCAGCTGATACACACATCACTATCTGAAGA  878

seq1  AAAGGACTCACCTCTTACCTGGTGAGGGCTCTCTGGAACCTCGACACAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACTCACCTCTTACCTGGTGAGGGCTCTCTGGAACCTCGACACAAC  928

seq1  TTCCCTTCTGTTTTGTAAGAAACAAAAGTCTACTAAAACGTTGATAGTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTCTGTTTTGTAAGAAACAAAAGTCTACTAAAACGTTGATAGTAA  978

seq1  CATTTTAACAACCACAACAACTTTCACTTCTTTCTTGAAAGGAAAAAATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAACAACCACAACAACTTTCACTTCTTTCTTGAAAGGAAAAAATG  1028

seq1  TGAAAGGCATATATGAACCTTATCATTTATGTAACAAAATATCCTTGGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGCATATATGAACCTTATCATTTATGTAACAAAATATCCTTGGAA  1078

seq1  CAGAGAATTC  1110
      ||||||||||
seq2  CAGAGAATTC  1088


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