BAC Information

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BAC

Clone NameB6Ng01-339G03
Chromosome6 (Build37)
Map Location 8,076,278 - 8,205,609
singlet/doubletdoublet
Overlap geneCol28a1, BC020002
Upstream geneEG667500, Tac1, LOC667511, Asns, EG667529, C1galt1, LOC100040661
Downstream geneRpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1, Ica1, LOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339G03.bB6Ng01-339G03.g
ACCGA123392GA123393
length1,136928
definitionB6Ng01-339G03.b B6Ng01-339G03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,076,278 - 8,077,406)(8,205,071 - 8,205,609)
sequence
gaattcaggtcaagactctataaagaagtcaaattaggggttagagagat
agctctttcaactccagcagaaaaccccagttcagttcccaagacacaca
taggatcaagtcacaaacaccttccaatccagcttcaaggaatctcatgc
cctctgcaggccccttagagccctgaaatcatgtgcagtaaacacacaca
cacacacacacacagtcatatatttcaaaacctcacaatacccagctgtt
tacttcacaggtactgcaaagaaacatttctgttagtgattccatggggc
acaatgcaatgcgaaaccaaggaaggaggctactgctgtggctgcctgct
tttgcttctgccttggtgaaccagctttagttatttgcacaaaaataaag
ctcacttgagaagttatgaagtgcttcataacagaagagtcatgttttat
tcatttcctcttcagatttctcgtgacagaatccttttttccttttccaa
caatagcaaacttcaaagctgcataaggtggaagctgggaataaagcagg
ctttatctttgtcccatgctcaagcctaactttagtgcattctcggggat
tacataatgagaagatcttcagcctcacattctagtcccccatggttctc
aggactacaattaccatgtatagacagaggacctcaatcgagatctgtca
cctcctagggaactttgacacctagaactctttttctttgccaagctaat
taatcttatgagaggttacagtgaggaaaacatcatacacatatgtgaat
gcatatacacacatatatattcatatagccttatttcaagcatgtaaagt
aatacagaccttgttcttacatgcttctactattaatggactttttaaca
taaaaacatacacagtagagtcacttgggcatttcttttttgccagaatg
agcaggtaagaatttacactctgccactttactccacatgcagctttggg
ccacttactgggctgtccggtttcaccaaatttccaaatcggtcccggaa
gctcccattcttcttcctgatcccctctccaccctgagaaaggaaggtag
ttacaggtgagcttttttaaaaaaataatagatgat

gaattctcatctaacatttttagggcctgaatattggaatgtcttcccac
aggtcaaactaatttgagagattctggagactttagatatgaaagaagta
tgtcactggagggttgcctttcagggttctagctggtctctgatcccttc
ctcactttgctgcttcttcaccccagtgttatgaatctctcttttctccc
atcccctgtcatctctaaggtactaagccctctgaaagcatgaatcagct
ctccttttaagttgtgaatatcaagtgttttgtcacaatgataaaatagt
tatttatacacacacacatacaagtggagtcagagaagtagggtgattac
tatgagaaatctgtgtggttcttaaatcttaagaatggattcaggagaag
aatttgcaaggtttggagaactgagaagagaagtcctagcacattgtgag
ctaataataatgtaataattaataatgtaatgcataatggctggaacttg
aaagaccaaaatgctgataggaataaggactgctcataagatttcaggta
gatttgagactgttgggaattagactggaaaaacattctgtgaaaggatt
tgcctagatttttgtctatgtcccgagacaaagtgaggttaaattcaaaa
tgaagacattaatttggaaaaaaatttttagacagattaagattcaggct
gtgatgtgttcattgtacatctttttgctgggtttacagtaagaactaga
gtaaaaagtaatgttgaaaactgtagtttggccagaaagggaatgtttca
agtgggcacaaagggtatacgtagttgttcagagcttagcaccaggaaaa
agaaagcaaattcttttcattgggatagtgggagagataccattagggca
tcacagaataagtttttgactcattggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8076278_8077406
seq2: B6Ng01-339G03.b_47_1182

seq1  GAATTCAGGTCAAGACTCTATAAAGAAGTCAAATTAGGGGTTAGAGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCAAGACTCTATAAAGAAGTCAAATTAGGGGTTAGAGAGAT  50

seq1  AGCTCTTTCAACTCCAGCAGAAAACCCCAGTTCAGTTCCCAAGACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTTCAACTCCAGCAGAAAACCCCAGTTCAGTTCCCAAGACACACA  100

seq1  TAGGATCAAGTCACAAACACCTTCCAATCCAGCTTCAAGGAATCTCATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATCAAGTCACAAACACCTTCCAATCCAGCTTCAAGGAATCTCATGC  150

seq1  CCTCTGCAGGCCCCTTAGAGCCCTGAAATCATGTGCAGTAAACACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCAGGCCCCTTAGAGCCCTGAAATCATGTGCAGTAAACACACACA  200

seq1  CACACACACACACAGTCATATATTTCAAAACCTCACAATACCCAGCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACAGTCATATATTTCAAAACCTCACAATACCCAGCTGTT  250

seq1  TACTTCACAGGTACTGCAAAGAAACATTTCTGTTAGTGATTCCATGGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCACAGGTACTGCAAAGAAACATTTCTGTTAGTGATTCCATGGGGC  300

seq1  ACAATGCAATGCGAAACCAAGGAAGGAGGCTACTGCTGTGGCTGCCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCAATGCGAAACCAAGGAAGGAGGCTACTGCTGTGGCTGCCTGCT  350

seq1  TTTGCTTCTGCCTTGGTGAACCAGCTTTAGTTATTTGCACAAAAATAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCTGCCTTGGTGAACCAGCTTTAGTTATTTGCACAAAAATAAAG  400

seq1  CTCACTTGAGAAGTTATGAAGTGCTTCATAACAGAAGAGTCATGTTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTGAGAAGTTATGAAGTGCTTCATAACAGAAGAGTCATGTTTTAT  450

seq1  TCATTTCCTCTTCAGATTTCTCGTGACAGAATCCTTTTTTCCTTTTCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCTCTTCAGATTTCTCGTGACAGAATCCTTTTTTCCTTTTCCAA  500

seq1  CAATAGCAAACTTCAAAGCTGCATAAGGTGGAAGCTGGGAATAAAGCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCAAACTTCAAAGCTGCATAAGGTGGAAGCTGGGAATAAAGCAGG  550

seq1  CTTTATCTTTGTCCCATGCTCAAGCCTAACTTTAGTGCATTCTCGGGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCTTTGTCCCATGCTCAAGCCTAACTTTAGTGCATTCTCGGGGAT  600

seq1  TACATAATGAGAAGATCTTCAGCCTCACATTCTAGTCCCCCATGGTTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATGAGAAGATCTTCAGCCTCACATTCTAGTCCCCCATGGTTCTC  650

seq1  AGGACTACAATTACCATGTATAGACAGAGGACCTCAATCGAGATCTGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTACAATTACCATGTATAGACAGAGGACCTCAATCGAGATCTGTCA  700

seq1  CCTCCTAGGGAACTTTGACACCTAGAACTCTTTTTCTTTGCCAAGCTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAGGGAACTTTGACACCTAGAACTCTTTTTCTTTGCCAAGCTAAT  750

seq1  TAATCTTATGAGAGGTTACAGTGAGGAAAACATCATACACATATGTGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTATGAGAGGTTACAGTGAGGAAAACATCATACACATATGTGAAT  800

seq1  GCATATACACACATATATATTCATATAGCCTTATTTCAAGCATGTAAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATACACACATATATATTCATATAGCCTTATTTCAAGCATGTAAAGT  850

seq1  AATACAGACCTTGTTCTTACATGCTTCTACTATTAATGGACTTTTTAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGACCTTGTTCTTACATGCTTCTACTATTAATGGACTTTTTAACA  900

seq1  TAAAAACATACACAGTAGAGTCACTTGGGCATTTCTTTTTTGCCAGAATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACATACACAGTAGAGTCACTTGGGCATTTCTTTTTTGCCAGAATG  950

seq1  AGCAGGTAAGAA-TTACACTCTGCCACTTTACTCCACATGCAGCTTT-GG  998
      |||||||||||| |||||||||||||||||||||||||||||||||| ||
seq2  AGCAGGTAAGAATTTACACTCTGCCACTTTACTCCACATGCAGCTTTGGG  1000

seq1  CCACTTACT-GGCTGTCCGGGTTCACCAA--TTCC-AATCGGT-CCGGGA  1043
      ||||||||| |||||||||| ||||||||  |||| ||||||| |||| |
seq2  CCACTTACTGGGCTGTCCGGTTTCACCAAATTTCCAAATCGGTCCCGGAA  1050

seq1  GCTCCCATTCTTCCTTCCTG-GCCCCTCT-CACCCTGAGACAGGAAAAGT  1091
      |||||||||||| |||||||  ||||||| |||||||||| ||| || ||
seq2  GCTCCCATTCTT-CTTCCTGATCCCCTCTCCACCCTGAGAAAGG-AAGGT  1098

seq1  AGTTACAGGGTGAG--TTTTTTAAAAAATAATAGGATGAT  1129
      ||||||| ||||||  ||||| ||||||||||| ||||||
seq2  AGTTACA-GGTGAGCTTTTTTAAAAAAATAATA-GATGAT  1136


seq1: chr6_8205071_8205609
seq2: B6Ng01-339G03.g_63_601 (reverse)

seq1  TTATGAGCAGTCCTTATTCCTATCAGCATTTTGGTCTTTCAAGTTCCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGCAGTCCTTATTCCTATCAGCATTTTGGTCTTTCAAGTTCCAGC  50

seq1  CATTATGCATTACATTATTAATTATTACATTATTATTAGCTCACAATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGCATTACATTATTAATTATTACATTATTATTAGCTCACAATGTG  100

seq1  CTAGGACTTCTCTTCTCAGTTCTCCAAACCTTGCAAATTCTTCTCCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACTTCTCTTCTCAGTTCTCCAAACCTTGCAAATTCTTCTCCTGAA  150

seq1  TCCATTCTTAAGATTTAAGAACCACACAGATTTCTCATAGTAATCACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCTTAAGATTTAAGAACCACACAGATTTCTCATAGTAATCACCCT  200

seq1  ACTTCTCTGACTCCACTTGTATGTGTGTGTGTATAAATAACTATTTTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTGACTCCACTTGTATGTGTGTGTGTATAAATAACTATTTTATC  250

seq1  ATTGTGACAAAACACTTGATATTCACAACTTAAAAGGAGAGCTGATTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGACAAAACACTTGATATTCACAACTTAAAAGGAGAGCTGATTCAT  300

seq1  GCTTTCAGAGGGCTTAGTACCTTAGAGATGACAGGGGATGGGAGAAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAGAGGGCTTAGTACCTTAGAGATGACAGGGGATGGGAGAAAAGA  350

seq1  GAGATTCATAACACTGGGGTGAAGAAGCAGCAAAGTGAGGAAGGGATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCATAACACTGGGGTGAAGAAGCAGCAAAGTGAGGAAGGGATCAG  400

seq1  AGACCAGCTAGAACCCTGAAAGGCAACCCTCCAGTGACATACTTCTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGCTAGAACCCTGAAAGGCAACCCTCCAGTGACATACTTCTTTCA  450

seq1  TATCTAAAGTCTCCAGAATCTCTCAAATTAGTTTGACCTGTGGGAAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAAGTCTCCAGAATCTCTCAAATTAGTTTGACCTGTGGGAAGACA  500

seq1  TTCCAATATTCAGGCCCTAAAAATGTTAGATGAGAATTC  539
      |||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATATTCAGGCCCTAAAAATGTTAGATGAGAATTC  539


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