BAC Information

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BAC

Clone NameB6Ng01-339N11
Chromosome2 (Build37)6 (Build37)
Map Location 167,182,911 - 167,183,09437,811,195 - 37,811,526
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePpia-ps2_2197.1, BC067047, Trp53rk, Arfgef2, LOC670802, Cse1l, Stau1, LOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950, Kcnb1, Ptgis, LOC668951, B4galt5
Downstream geneSlc9a8, Spata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb, LOC100043728, Ptpn1, 2310033K02Rik, Pard6b, Adnp, Dpm1, Mocs3, LOC100043908, Kcng1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339N11.bB6Ng01-339N11.g
ACCGA123726GA123727
length954332
definitionB6Ng01-339N11.b B6Ng01-339N11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(167,182,911 - 167,183,094)(37,811,195 - 37,811,526)
sequence
gaattctttgttgtcttcatttaaatatttagtcttttttttttgtttgt
ttgtttttttttttttttggttttatgagacagggtttctctgtgtagcc
ctggctgtcctggaactcactctgtagaccaggctggcctcgaactcaga
aatccacctgcctctgcctcttgagtgctaggattaaaggtgtgtgccac
caccgcccggcttatttagtcttttaatggtatctcatacataattcctg
tatgtttctttcatgtgtttaaaaccttttcatattctttgcttgtatgc
tccaattcttttcctcagaattcttaccttcacattctgacattctgtct
tctacttgtctattgtttgtaaggcttacccctaaggttgatagtttgag
tttttcagttctatcttcattctggcttcagttttcagtagttctcagtt
ttccagtcctggattattttaatctcatttgccatgcatttgtcttttct
tgagcatcacttaggcatttgttgctattccctttaaattcattgaacta
tttgttcatttttcttttgctgaagttaatgttctttgtttttgtttttt
gagacgggatttccttaatttcttttttcttttaattaatttatttttta
tattccatattttattccccccaatctaccctccgactgactattccaca
ccccatacttcctccctacatccctgtctccatgtggatgtccccaccct
tcaccccacctgacctctaaactccctgggcttccagtctcttgagggtt
aggtgcatcatctctgaatgaacacagacccagcagtcctctactgtatg
tgtgttggtggcctcatatcagctgatgtatgctgtctctttggtggtcc
agtgtttgagagatctcggaggtccagattaattgagactgctggtcctc
ctga
attgttattcagtaaattctgacattgcagaaagacaggcttcacttcag
tctattactttgtgttccaaaaaaggactagagatgtcccccacactcat
gtctgtcactttagccatccagtgagggttttttttcaatctacaaataa
tgttctgaaaacataaaatatctgggaagaaaacaggtgataagggaatg
gaaagatcattttaatcttgaatcatgaactctccacctgagcatatgac
tctgaagaagaagctaatcaaaccaaatgcttatggtggaccagaggaca
agaagactaaaccaagttggggggggggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_167182911_167183094
seq2: B6Ng01-339N11.b_82_481

seq1  TTTTGTTTTGTTTGTTTG-----TTTGTTTTTTGGTTTTTCGAGACAGGG  45
      |||| |||||||||||||     ||| ||||||||||||  |||||||||
seq2  TTTTTTTTTGTTTGTTTGTTTTTTTTTTTTTTTGGTTTTATGAGACAGGG  50

seq1  TTTTTCTGTGTAGCCCTGGCTGTCTTGGAACTCACTTTGTAGACCAGGCT  95
      ||| |||||||||||||||||||| ||||||||||| |||||||||||||
seq2  TTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCT  100

seq1  GGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATT  145
      |||||||||||||||||||||||||||||||||||  ||||||| |||||
seq2  GGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCTTGAGTGCTAGGATT  150

seq1  AAAGGCATGTGCCACCA-CGCCCGGCTGGGCTTCAGTTTT----------  184
      |||||  |||||||||| |||||||||    || ||| ||          
seq2  AAAGGTGTGTGCCACCACCGCCCGGCT--TATTTAGTCTTTTAATGGTAT  198

seq1  --------------------------------------------------  184
                                                        
seq2  CTCATACATAATTCCTGTATGTTTCTTTCATGTGTTTAAAACCTTTTCAT  248

seq1  --------------------------------------------------  184
                                                        
seq2  ATTCTTTGCTTGTATGCTCCAATTCTTTTCCTCAGAATTCTTACCTTCAC  298

seq1  --------------------------------------------------  184
                                                        
seq2  ATTCTGACATTCTGTCTTCTACTTGTCTATTGTTTGTAAGGCTTACCCCT  348

seq1  --------------------------------------------------  184
                                                        
seq2  AAGGTTGATAGTTTGAGTTTTTCAGTTCTATCTTCATTCTGGCTTCAGTT  398

seq1  --  184
        
seq2  TT  400

seq1: chr6_37811195_37811526
seq2: B6Ng01-339N11.g_74_405

seq1  ATTGTTATTCAGTAAATTCTGACATTGCAGAAAGACAGGCTTCACTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTATTCAGTAAATTCTGACATTGCAGAAAGACAGGCTTCACTTCAG  50

seq1  TCTATTACTTTGTGTTCCAAAAAAGGACTAGAGATGTCCCCCACACTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTACTTTGTGTTCCAAAAAAGGACTAGAGATGTCCCCCACACTCAT  100

seq1  GTCTGTCACTTTAGCCATCCAGTGAGGGTTTTTTTTCAATCTACAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCACTTTAGCCATCCAGTGAGGGTTTTTTTTCAATCTACAAATAA  150

seq1  TGTTCTGAAAACATAAAATATCTGGGAAGAAAACAGGTGATAAGGGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGAAAACATAAAATATCTGGGAAGAAAACAGGTGATAAGGGAATG  200

seq1  GAAAGATCATTTTAATCTTGAATCATGAACTCTCCACCTGAGCATATGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATCATTTTAATCTTGAATCATGAACTCTCCACCTGAGCATATGAC  250

seq1  TCTGAAGAAGAAGCTAATCAAACCAAATGCTTATGGTGGACCAGAGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGAAGAAGCTAATCAAACCAAATGCTTATGGTGGACCAGAGGACA  300

seq1  AGAAGACTAAACCAAGTTGGGGGGGGGGAGGG  332
      ||||||||||||||||||||||||||||||||
seq2  AGAAGACTAAACCAAGTTGGGGGGGGGGAGGG  332